CsaV3_3G007800 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G007800
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionmicrotubule-associated protein RP/EB family member 1-like
Locationchr3 : 6811762 .. 6813567 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCTTCTCTTCTTCTCCAATGGTGTCTTCAATTTTATCATCATTGTATTCTCACTATAAATAACTCACAAAGCTCAATTCCATTTCACCATCTCTACCTATTATTATTATAAATTGGAATAAACTTAGCTTTTTAATTTTAATTATTTTTTATTAATAATGTCAAATCTTCCTCGTTTCGGCCGTCAATGGAACCGCTTCTCTTCTCTGCCGCGTCCTGGTACTGCCACCCGCCCGGAACCTCAACCATTCACGGCGGCCACCGAGCCCGAAGTTTTTCCCTCAGCTGTACCAACCACTAATACTTTTCAAACGTCTCCTATAAAACAAAGAACCCCTCGTCTTTCATCTCCGGTTAAAAAATTTTCCTCGCCCCCGTCTTCTCCAAAATATAGCGGCGCCGGCACCGTTTCGCCTCGTAAACCACTATCTCCACCTCCGGTGCATAACCGTTACGAAGGTGAACGTCGGACTAGTGCCACAACATCTCCCAAAACTTTTAAACCCACCCATATCTCTCCCCCACCGTCTCCGTCCAAGCCTAGACACTCTACCGTTCCCACCGCTGTTGCACCACTCTCTCCTCTGGCTCTGCCGCGATCGCAGGTGAGACGTGAACCTGAACACTCCCTTCGACCTCGGAGCCCGCCGGAGGTAATTAGTTAAATTAATTAACGTAAAGTTTCTAGCTCACTCAATGGTCTCTTCATATATTTAATTAATTACAATAAACTTATTTCATCGTAACCCATATTATAATAGATTGCAACATAACCATCGATCTTAAGAGTGATGATTAATGACTTTATTTACATCAACGCTAAACAGATCGAACAAAAAAAGATTCTTTACCAGACGACAACAACCGAGAAGCCAACAAAAACCGATCATTACCGCCAAAACGATGAGTACGGCGCGAGTAAACCCCAGCAGAAGCAGCAGCATCAGCAGCTGCAGAGTGACGTTATAAACATAAAAGGGGAGAACGTAGGGGCAGTGATGCACATCACACAATCATCTGATGGCTCAGAAGTAATAAAGAAAAAGCCAACCGTTGGACAAAGCAAAGAAAATGAAGAGAAAACAAACAAATCAAATTCAAATTATCCAGGGAAGTCGTTTATGAACAGCAATTTTCAAGGCGTTAACAATTCTATTCTTTACAATTCTTCTTTAAGCCACCGTGATCCAGGTCTCCACCTTGCTTTTGGCTCGAAGAAGTCTAAACATGGCGATTCAATTCATGATTCAAGGCACTAAAGTATATATGGACCAGTTATTATATATTCTATATACTTATATATTATTTAAGCTGCTGAAAAAATAATCATAAATATAATAAAACAACAATATCACAGCAACAATATAATAATAGTTATTATACCATTTTATGTTGATATTTATATTTATATCTTCATATGGAACATGTATTTCCACTCTATAAAAGTTATGTAATTGTTGGCTTAAGTATTTGGAAAATGAGTTGTTAATAATAAAGAGCTACGGTGAGATATATTAATGCTAATGTTAAAAAACAGTATTAGTTTAATCAAGACTTGTGATTTCAATTATTGTTACTTATAATTAGAAAAGTGTGTATATGTATATGTTTCATTCCTTCTTAATTTCTGAAATTTTCAATTGACTTAAAGCAAAATTGTATAGAAATTCATATGGTATTAAAGCAGTGTGTTTAATGTATATATAGTTAATGTAATGTTTATGATCCATATATAATTTTAAGAAATTAAAGCAAAATTTAATCCTTTAATTACGTCAAAATCACACTTGATAAAGCACTTGTGAA

mRNA sequence

ATGTCAAATCTTCCTCGTTTCGGCCGTCAATGGAACCGCTTCTCTTCTCTGCCGCGTCCTGGTACTGCCACCCGCCCGGAACCTCAACCATTCACGGCGGCCACCGAGCCCGAAGTTTTTCCCTCAGCTGTACCAACCACTAATACTTTTCAAACGTCTCCTATAAAACAAAGAACCCCTCGTCTTTCATCTCCGGTTAAAAAATTTTCCTCGCCCCCGTCTTCTCCAAAATATAGCGGCGCCGGCACCGTTTCGCCTCGTAAACCACTATCTCCACCTCCGGTGCATAACCGTTACGAAGGTGAACGTCGGACTAGTGCCACAACATCTCCCAAAACTTTTAAACCCACCCATATCTCTCCCCCACCGTCTCCGTCCAAGCCTAGACACTCTACCGTTCCCACCGCTGTTGCACCACTCTCTCCTCTGGCTCTGCCGCGATCGCAGGTGAGACGTGAACCTGAACACTCCCTTCGACCTCGGAGCCCGCCGGAGATCGAACAAAAAAAGATTCTTTACCAGACGACAACAACCGAGAAGCCAACAAAAACCGATCATTACCGCCAAAACGATGAGTACGGCGCGAGTAAACCCCAGCAGAAGCAGCAGCATCAGCAGCTGCAGAGTGACGTTATAAACATAAAAGGGGAGAACGTAGGGGCAGTGATGCACATCACACAATCATCTGATGGCTCAGAAGTAATAAAGAAAAAGCCAACCGTTGGACAAAGCAAAGAAAATGAAGAGAAAACAAACAAATCAAATTCAAATTATCCAGGGAAGTCGTTTATGAACAGCAATTTTCAAGGCGTTAACAATTCTATTCTTTACAATTCTTCTTTAAGCCACCGTGATCCAGGTCTCCACCTTGCTTTTGGCTCGAAGAAGTCTAAACATGGCGATTCAATTCATGATTCAAGGCACTAA

Coding sequence (CDS)

ATGTCAAATCTTCCTCGTTTCGGCCGTCAATGGAACCGCTTCTCTTCTCTGCCGCGTCCTGGTACTGCCACCCGCCCGGAACCTCAACCATTCACGGCGGCCACCGAGCCCGAAGTTTTTCCCTCAGCTGTACCAACCACTAATACTTTTCAAACGTCTCCTATAAAACAAAGAACCCCTCGTCTTTCATCTCCGGTTAAAAAATTTTCCTCGCCCCCGTCTTCTCCAAAATATAGCGGCGCCGGCACCGTTTCGCCTCGTAAACCACTATCTCCACCTCCGGTGCATAACCGTTACGAAGGTGAACGTCGGACTAGTGCCACAACATCTCCCAAAACTTTTAAACCCACCCATATCTCTCCCCCACCGTCTCCGTCCAAGCCTAGACACTCTACCGTTCCCACCGCTGTTGCACCACTCTCTCCTCTGGCTCTGCCGCGATCGCAGGTGAGACGTGAACCTGAACACTCCCTTCGACCTCGGAGCCCGCCGGAGATCGAACAAAAAAAGATTCTTTACCAGACGACAACAACCGAGAAGCCAACAAAAACCGATCATTACCGCCAAAACGATGAGTACGGCGCGAGTAAACCCCAGCAGAAGCAGCAGCATCAGCAGCTGCAGAGTGACGTTATAAACATAAAAGGGGAGAACGTAGGGGCAGTGATGCACATCACACAATCATCTGATGGCTCAGAAGTAATAAAGAAAAAGCCAACCGTTGGACAAAGCAAAGAAAATGAAGAGAAAACAAACAAATCAAATTCAAATTATCCAGGGAAGTCGTTTATGAACAGCAATTTTCAAGGCGTTAACAATTCTATTCTTTACAATTCTTCTTTAAGCCACCGTGATCCAGGTCTCCACCTTGCTTTTGGCTCGAAGAAGTCTAAACATGGCGATTCAATTCATGATTCAAGGCACTAA

Protein sequence

MSNLPRFGRQWNRFSSLPRPGTATRPEPQPFTAATEPEVFPSAVPTTNTFQTSPIKQRTPRLSSPVKKFSSPPSSPKYSGAGTVSPRKPLSPPPVHNRYEGERRTSATTSPKTFKPTHISPPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKILYQTTTTEKPTKTDHYRQNDEYGASKPQQKQQHQQLQSDVINIKGENVGAVMHITQSSDGSEVIKKKPTVGQSKENEEKTNKSNSNYPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFGSKKSKHGDSIHDSRH
Homology
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BLAST of CsaV3_3G007800 vs. NCBI nr
Match: XP_004133796.1 (PREDICTED: leucine-rich repeat extensin-like protein 5 [Cucumis sativus] >KGN56394.1 hypothetical protein Csa_3G119290 [Cucumis sativus])

HSP 1 Score: 538.9 bits (1387), Expect = 1.1e-149
Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = 0 

Query: 1   MSNLPRFGRQWNRFSSLPRPGTATRPEPQPFTAATEPEVFPSAVPTTNTFQTSPIKQRTP 60
           MSNLPRFGRQWNRFSSLPRPGTATRPEPQPFTAATEPEVFPSAVPTTNTFQTSPIKQRTP
Sbjct: 1   MSNLPRFGRQWNRFSSLPRPGTATRPEPQPFTAATEPEVFPSAVPTTNTFQTSPIKQRTP 60

Query: 61  RLSSPVKKFSSPPSSPKYSGAGTVSPRXPLXXXXVHNRYEGERRTSATTSPKTFKPTHIS 120
           RLSSPVKKFSSPPSSPKYSGAGTVSPRXPLXXXXVHNRYEGERRTSATTSPKTFKPTHIS
Sbjct: 61  RLSSPVKKFSSPPSSPKYSGAGTVSPRXPLXXXXVHNRYEGERRTSATTSPKTFKPTHIS 120

Query: 121 PPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKILYQTTTTEK 180
           PPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKILYQTTTTEK
Sbjct: 121 PPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKILYQTTTTEK 180

Query: 181 PTKTDHYRQNDEYGASKPQQKQQHQQLQSDVINIKGENVGAVMHITQSSDGSEVIKKKPT 240
           PTKTDHYRQNDEYGASKPQQKQQHQQLQSDVINIKGENVGAVMHITQSSDGSEVIKKKPT
Sbjct: 181 PTKTDHYRQNDEYGASKPQQKQQHQQLQSDVINIKGENVGAVMHITQSSDGSEVIKKKPT 240

Query: 241 VGQSKENEEXXXXXXXXXXXXXXXXXXXXXVNNSILYNSSLSHRDPGLHLAFGSKKSKHG 300
           VGQSKENEEXXXXXXXXXXXXXXXXXXXXXVNNSILYNSSLSHRDPGLHLAFGSKKSKHG
Sbjct: 241 VGQSKENEEXXXXXXXXXXXXXXXXXXXXXVNNSILYNSSLSHRDPGLHLAFGSKKSKHG 300

Query: 301 DSIHDSRH 309
           DSIHDSRH
Sbjct: 301 DSIHDSRH 308

[Close]
BLAST of CsaV3_3G007800 vs. NCBI nr
Match: XP_008437849.1 (PREDICTED: microtubule-associated protein RP/EB family member 1-like [Cucumis melo])

HSP 1 Score: 444.9 bits (1143), Expect = 2.2e-121
Identity = 261/310 (84.19%), Postives = 276/310 (89.03%), Query Frame = 0 

Query: 1   MSNLPRFGRQWNRFSSLPRPGTATRPEPQP-FTAATEPEVFPSAVPTTNTFQTSPIKQRT 60
           MSNLPRFGR WNRFSSLPRP TA R E QP FTAATEPEVFPSAVPTTNT QTSP+KQRT
Sbjct: 1   MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT 60

Query: 61  PRLSSPVKKFSSPPSSPKYSGA-GTVSPRXPLXXXXVHNRYEGERRTSATTSPKTFKPTH 120
           PRLSSPVKKF SPPSSPKYSGA GT+SPR PL     +NR++GERRTSATTSPKTFKPT+
Sbjct: 61  PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY 120

Query: 121 ISPPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKILYQTTTT 180
           ISPPPS     HST  T VAPLSPLALPRS+VRREPE S+RPRSPPEIEQKKILYQTTTT
Sbjct: 121 ISPPPSXXXXXHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEIEQKKILYQTTTT 180

Query: 181 EKPTKTDHYRQNDEYGASKPQQKQQHQQLQSDVINIKGENVGAVMHITQSSDGSEVIKKK 240
           EKPTKTD YRQ D+YG SKPQQKQ HQQLQSDVINIKG+NVGAVMHITQSSDGSE++KKK
Sbjct: 181 EKPTKTD-YRQTDQYGTSKPQQKQHHQQLQSDVINIKGDNVGAVMHITQSSDGSEILKKK 240

Query: 241 PTVGQSKENEEXXXXXXXXXXXXXXXXXXXXXVNNSILYNSSLSHRDPGLHLAFGSKKSK 300
           P+VGQSKENE XXXXXXXXXXXXXXXXXXXXX  NSILYNSSLSHRDPGLHLA+ SK  K
Sbjct: 241 PSVGQSKENEXXXXXXXXXXXXXXXXXXXXXXXXNSILYNSSLSHRDPGLHLAYSSKNPK 300

Query: 301 HGDSIHDSRH 309
           HGDSIH+SRH
Sbjct: 301 HGDSIHESRH 309

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BLAST of CsaV3_3G007800 vs. NCBI nr
Match: XP_022974813.1 (DNA-directed RNA polymerase II subunit 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 291.2 bits (744), Expect = 4.1e-75
Identity = 182/309 (58.90%), Postives = 205/309 (66.34%), Query Frame = 0 

Query: 1   MSNLPRFGRQWNRFSSLPRPGTATRPEPQPFTAATEPEVFPSAVPTTNTFQTSPIKQRTP 60
           M+NLPRFGR WNRFSSLPRP TA R +  P  A +EPEVF SA PT N  QTSPIK+R+P
Sbjct: 1   MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60

Query: 61  R-LSSPVKKFSSPPSSPKYSGAGTVSPRXPLXXXXVHNRYEGERRTSATTSPKTFKPTHI 120
           R                           X  XXXX   RY+GERR+SA  SPKTFK T+ 
Sbjct: 61  RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYDGERRSSAQASPKTFKTTYT 120

Query: 121 SPPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKILYQTTTTE 180
           SPP SP+K ++ST  T  APLSPLALP  + R EPE  +RPRSPPE++QK +LYQ TT+E
Sbjct: 121 SPPRSPAKHKYST-STVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTSE 180

Query: 181 KPTKTDHYRQNDEYGASKPQQKQQHQQLQSDVINIKGENVGAVMHITQSSDGSEVIKKKP 240
           KP KTDH  +  EY + KPQQKQ HQQ QSDVINIKGENVGAVMHITQSSD +E  KKKP
Sbjct: 181 KPAKTDH--RASEYSSGKPQQKQTHQQ-QSDVINIKGENVGAVMHITQSSDATETHKKKP 240

Query: 241 TVGQSKENEEXXXXXXXXXXXXXXXXXXXXXVNNSILYNSSLSHRDPGLHLAFGSKKSKH 300
           TV  S ENE+                     VNNSILYNSSLSHRDPGLHLAF +KK  H
Sbjct: 241 TVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAF-TKKPTH 300

Query: 301 GDSIHDSRH 309
            DS+HDSRH
Sbjct: 301 ADSVHDSRH 304

[Close]
BLAST of CsaV3_3G007800 vs. NCBI nr
Match: XP_022974814.1 (DNA-directed RNA polymerase II subunit 1-like isoform X2 [Cucurbita maxima] >XP_022974815.1 DNA-directed RNA polymerase II subunit 1-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 291.2 bits (744), Expect = 4.1e-75
Identity = 182/309 (58.90%), Postives = 205/309 (66.34%), Query Frame = 0 

Query: 1   MSNLPRFGRQWNRFSSLPRPGTATRPEPQPFTAATEPEVFPSAVPTTNTFQTSPIKQRTP 60
           M+NLPRFGR WNRFSSLPRP TA R +  P  A +EPEVF SA PT N  QTSPIK+R+P
Sbjct: 1   MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60

Query: 61  R-LSSPVKKFSSPPSSPKYSGAGTVSPRXPLXXXXVHNRYEGERRTSATTSPKTFKPTHI 120
           R                           X  XXXX   RY+GERR+SA  SPKTFK T+ 
Sbjct: 61  RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYDGERRSSAQASPKTFKTTYT 120

Query: 121 SPPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKILYQTTTTE 180
           SPP SP+K ++ST  T  APLSPLALP  + R EPE  +RPRSPPE++QK +LYQ TT+E
Sbjct: 121 SPPRSPAKHKYST-STVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTSE 180

Query: 181 KPTKTDHYRQNDEYGASKPQQKQQHQQLQSDVINIKGENVGAVMHITQSSDGSEVIKKKP 240
           KP KTDH  +  EY + KPQQKQ HQQ QSDVINIKGENVGAVMHITQSSD +E  KKKP
Sbjct: 181 KPAKTDH--RASEYSSGKPQQKQTHQQ-QSDVINIKGENVGAVMHITQSSDATETHKKKP 240

Query: 241 TVGQSKENEEXXXXXXXXXXXXXXXXXXXXXVNNSILYNSSLSHRDPGLHLAFGSKKSKH 300
           TV  S ENE+                     VNNSILYNSSLSHRDPGLHLAF +KK  H
Sbjct: 241 TVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAF-TKKPTH 300

Query: 301 GDSIHDSRH 309
            DS+HDSRH
Sbjct: 301 ADSVHDSRH 304

[Close]
BLAST of CsaV3_3G007800 vs. NCBI nr
Match: XP_022147442.1 (proline-rich receptor-like protein kinase PERK2 [Momordica charantia])

HSP 1 Score: 274.2 bits (700), Expect = 5.2e-70
Identity = 165/304 (54.28%), Postives = 200/304 (65.79%), Query Frame = 0 

Query: 1   MSNLPRFGRQWNRFSSLPRPGTATRPEPQPFTAATEP----EVFPSAVPTTNTFQTSPIK 60
           M+NLPRFGR W RFSSLPRP TA++P               E+ P++  T    QTSPI+
Sbjct: 1   MANLPRFGRTWQRFSSLPRPATASQPXXXXXXXXXXXMNGREISPNSPVTAQVLQTSPIR 60

Query: 61  QRTPRLSSPVKKFSSPPSSPKYSGAGTVSPRXPLXXXXVHNRYEGERRTSATTSPKTFKP 120
           +R+ RL SP KKF+SPPSSPKY  A   SP  PL     +NRY+GERR+SATTSPK  KP
Sbjct: 61  ERSSRLPSPTKKFASPPSSPKYRPAAAASPPKPLSPTPSYNRYDGERRSSATTSPKAIKP 120

Query: 121 THISPPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKILYQTT 180
           ++ SPP SP+K ++ T  TA APLSPL LPRS+ + EP  ++R RSPPE+EQK I Y   
Sbjct: 121 SYTSPPLSPAKHKYPTAATA-APLSPLTLPRSEAKHEPGPTIRSRSPPEVEQKSIHY--P 180

Query: 181 TTEKPTKTDHYRQNDEYGASKPQQKQQHQQLQSDVINIKGENVGAVMHITQSSDGSEVIK 240
             EKPTK DH  +  EY + KPQ KQQ Q  QSDVI IKGENVGA+MHITQSSDG+E++K
Sbjct: 181 KVEKPTKPDH--RPSEYNSGKPQYKQQQQ--QSDVITIKGENVGAIMHITQSSDGTEMVK 240

Query: 241 KKPTVGQSKENEEXXXXXXXXXXXXXXXXXXXXXVNNSILYNSSLSHRDPGLHLAFGSKK 300
           KKP+     ++E+                     VNNS+LYNSS SHRDPGLHL+F SKK
Sbjct: 241 KKPSTESGNDDEK--GNKSSSLPAKSFMNSNFQGVNNSVLYNSSFSHRDPGLHLSF-SKK 294

[Close]
BLAST of CsaV3_3G007800 vs. TrEMBL
Match: tr|A0A0A0L5T3|A0A0A0L5T3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119290 PE=4 SV=1)

HSP 1 Score: 538.9 bits (1387), Expect = 7.6e-150
Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = 0 

Query: 1   MSNLPRFGRQWNRFSSLPRPGTATRPEPQPFTAATEPEVFPSAVPTTNTFQTSPIKQRTP 60
           MSNLPRFGRQWNRFSSLPRPGTATRPEPQPFTAATEPEVFPSAVPTTNTFQTSPIKQRTP
Sbjct: 1   MSNLPRFGRQWNRFSSLPRPGTATRPEPQPFTAATEPEVFPSAVPTTNTFQTSPIKQRTP 60

Query: 61  RLSSPVKKFSSPPSSPKYSGAGTVSPRXPLXXXXVHNRYEGERRTSATTSPKTFKPTHIS 120
           RLSSPVKKFSSPPSSPKYSGAGTVSPRXPLXXXXVHNRYEGERRTSATTSPKTFKPTHIS
Sbjct: 61  RLSSPVKKFSSPPSSPKYSGAGTVSPRXPLXXXXVHNRYEGERRTSATTSPKTFKPTHIS 120

Query: 121 PPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKILYQTTTTEK 180
           PPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKILYQTTTTEK
Sbjct: 121 PPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKILYQTTTTEK 180

Query: 181 PTKTDHYRQNDEYGASKPQQKQQHQQLQSDVINIKGENVGAVMHITQSSDGSEVIKKKPT 240
           PTKTDHYRQNDEYGASKPQQKQQHQQLQSDVINIKGENVGAVMHITQSSDGSEVIKKKPT
Sbjct: 181 PTKTDHYRQNDEYGASKPQQKQQHQQLQSDVINIKGENVGAVMHITQSSDGSEVIKKKPT 240

Query: 241 VGQSKENEEXXXXXXXXXXXXXXXXXXXXXVNNSILYNSSLSHRDPGLHLAFGSKKSKHG 300
           VGQSKENEEXXXXXXXXXXXXXXXXXXXXXVNNSILYNSSLSHRDPGLHLAFGSKKSKHG
Sbjct: 241 VGQSKENEEXXXXXXXXXXXXXXXXXXXXXVNNSILYNSSLSHRDPGLHLAFGSKKSKHG 300

Query: 301 DSIHDSRH 309
           DSIHDSRH
Sbjct: 301 DSIHDSRH 308

[Close]
BLAST of CsaV3_3G007800 vs. TrEMBL
Match: tr|A0A1S3AVJ6|A0A1S3AVJ6_CUCME (microtubule-associated protein RP/EB family member 1-like OS=Cucumis melo OX=3656 GN=LOC103483157 PE=4 SV=1)

HSP 1 Score: 444.9 bits (1143), Expect = 1.5e-121
Identity = 261/310 (84.19%), Postives = 276/310 (89.03%), Query Frame = 0 

Query: 1   MSNLPRFGRQWNRFSSLPRPGTATRPEPQP-FTAATEPEVFPSAVPTTNTFQTSPIKQRT 60
           MSNLPRFGR WNRFSSLPRP TA R E QP FTAATEPEVFPSAVPTTNT QTSP+KQRT
Sbjct: 1   MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT 60

Query: 61  PRLSSPVKKFSSPPSSPKYSGA-GTVSPRXPLXXXXVHNRYEGERRTSATTSPKTFKPTH 120
           PRLSSPVKKF SPPSSPKYSGA GT+SPR PL     +NR++GERRTSATTSPKTFKPT+
Sbjct: 61  PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY 120

Query: 121 ISPPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKILYQTTTT 180
           ISPPPS     HST  T VAPLSPLALPRS+VRREPE S+RPRSPPEIEQKKILYQTTTT
Sbjct: 121 ISPPPSXXXXXHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEIEQKKILYQTTTT 180

Query: 181 EKPTKTDHYRQNDEYGASKPQQKQQHQQLQSDVINIKGENVGAVMHITQSSDGSEVIKKK 240
           EKPTKTD YRQ D+YG SKPQQKQ HQQLQSDVINIKG+NVGAVMHITQSSDGSE++KKK
Sbjct: 181 EKPTKTD-YRQTDQYGTSKPQQKQHHQQLQSDVINIKGDNVGAVMHITQSSDGSEILKKK 240

Query: 241 PTVGQSKENEEXXXXXXXXXXXXXXXXXXXXXVNNSILYNSSLSHRDPGLHLAFGSKKSK 300
           P+VGQSKENE XXXXXXXXXXXXXXXXXXXXX  NSILYNSSLSHRDPGLHLA+ SK  K
Sbjct: 241 PSVGQSKENEXXXXXXXXXXXXXXXXXXXXXXXXNSILYNSSLSHRDPGLHLAYSSKNPK 300

Query: 301 HGDSIHDSRH 309
           HGDSIH+SRH
Sbjct: 301 HGDSIHESRH 309

[Close]
BLAST of CsaV3_3G007800 vs. TrEMBL
Match: tr|A0A1S3AV38|A0A1S3AV38_CUCME (zyxin-like OS=Cucumis melo OX=3656 GN=LOC103483158 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.9e-24
Identity = 116/309 (37.54%), Postives = 152/309 (49.19%), Query Frame = 0 

Query: 1   MSNLPRFGRQWNRFSSLPRPGTATRPEPQPFTAATEP--EVFPSAVPTTNTFQTSPIKQR 60
           M+NLPRFGR   R  ++P P  A     QP   A EP  ++ P A   T     SP ++ 
Sbjct: 1   MANLPRFGRARQRLPAVPPPVPAA---AQP---AVEPRYQILPFATTITTPAPASPRRES 60

Query: 61  TPRLSSPVKKFSSPPSSPKYSGAGTVSPRXPL------XXXXVHNRYEGERRTSATTSPK 120
              LSSP KK +SP +SPKY  + T   R P           V ++Y  ERR   TT   
Sbjct: 61  PRPLSSPPKKATSPFASPKYGDSRTRLDRSPAAKATMSPPDSVRDKY-FERRNGETT--- 120

Query: 121 TFKPTHISPPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKIL 180
                   PP SP+K R +          PLALPR+QV      + +PR  PE+E K I+
Sbjct: 121 --------PPLSPAKSRRA----KTXXXXPLALPRNQVFTGNGTTAQPRVQPEVETKGIV 180

Query: 181 YQTTTTEKPTKTDHYRQNDEYGASKPQQKQQHQQLQSDVINIKGENVGAVMHITQSSD-- 240
           Y   T EKP+K++  R + EYG+SK  QK+Q    + +VI +KG NVGAVM I +SS   
Sbjct: 181 Y-NKTVEKPSKSN--RSSGEYGSSKSHQKKQ----KPEVIKLKGHNVGAVMEINKSSTGY 240

Query: 241 --GSEVIKKKPT-----VGQSKENEEXXXXXXXXXXXXXXXXXXXXXVNNSILYNSSLSH 293
             G E +KK  T     V      ++                     VNNS+L++SS +H
Sbjct: 241 RLGGETLKKNETEDVGDVHGYGHEDKKTETKKKEPPITAFMNSNFQSVNNSLLFDSSCNH 280

[Close]
BLAST of CsaV3_3G007800 vs. TrEMBL
Match: tr|A0A0A0L320|A0A0A0L320_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119300 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 7.1e-23
Identity = 109/301 (36.21%), Postives = 146/301 (48.50%), Query Frame = 0 

Query: 1   MSNLPRFGRQWNRFSSLPRP-GTATRPEPQPFTAATEPEVFPSAVPTTNTFQTSPIKQRT 60
           M+NLPR GR   R SS+P P   A +P  +P     + E  P A   T     SP ++  
Sbjct: 1   MANLPRLGRTRQRLSSVPPPVPAAAQPAVEP-----KYETMPYATSITTPAPASPRRESP 60

Query: 61  PRLSSPVKKFSSPPSSPKYSGAGTVSPRXPLXXXXVHNRYEGERRTSATTSPKTFKPTHI 120
             LSSP KK +SP +S   S     + R P     + ++Y  ERR   TT          
Sbjct: 61  RPLSSPSKKATSPFASRVDSSPAAKATRSP--PDSIGDKYL-ERRNGETT---------- 120

Query: 121 SPPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKILYQTTTTE 180
            PP +P+K R    P   +PLSPLALPRSQV      + +PR  PE+E K I+Y     E
Sbjct: 121 -PPLTPAKSR----PAKTSPLSPLALPRSQVITGNGTTAQPRVQPEVETKGIVYNKAADE 180

Query: 181 KPTKTDHYRQNDEYGASKPQQKQQHQQLQSDVINIKGENVGAVMHITQSSD----GSEVI 240
           KP+K++  RQ++        QKQQ    +  V+ +KG NVGAVM + +SS     G E +
Sbjct: 181 KPSKSN--RQSEHGSGKSVHQKQQ----KPGVMKLKGHNVGAVMEVNKSSAGYRLGGETL 240

Query: 241 KKKPTVGQSK----ENEEXXXXXXXXXXXXXXXXXXXXXVNNSILYNSSLSHRDPGLHLA 293
           KKK T          +E+                     VNNS+L++SS  HRDPGLHL+
Sbjct: 241 KKKETEDDGDVDGYGHEDKKTGRKKKPPISAFMNSNFQSVNNSLLFDSSCQHRDPGLHLS 272

[Close]
BLAST of CsaV3_3G007800 vs. TrEMBL
Match: tr|A0A0A0L3R5|A0A0A0L3R5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119280 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 7.4e-12
Identity = 76/241 (31.54%), Postives = 110/241 (45.64%), Query Frame = 0 

Query: 98  RYEGERRTSATTSPKTFKPTHISPP---------PSPSKPRHSTVPTAVAPLSP------ 157
           +Y+G R  S+     T      SPP         P P+ P +S       P SP      
Sbjct: 32  QYDGRRYPSSARD--TSLEPRSSPPRVALRRDDQPLPASPTYSIKKATSPPSSPSYRAPA 91

Query: 158 ---LALPRSQVRREPEH--SLRPRSPPEIEQKKILYQTTTTEKPTKTDHYRQNDEYGASK 217
              ++ P   V   P++  + +PRS PE +QK  ++  +T EK TK+D Y ++ +  +S 
Sbjct: 92  ARGISSPTKTVDEYPKYKPNTQPRS-PEAKQKPGIFHKSTVEKVTKSDRYHESSKTLSS- 151

Query: 218 PQQKQQHQQLQSDVINIKGENVGAVMHITQSS--DGSEVIKKKPTVGQ---------SKE 277
                   QLQ + INIKGENVGAVM I +SS  +G  +IKK     +         + +
Sbjct: 152 -----HKGQLQPNAINIKGENVGAVMEIVESSKREGGHMIKKIKETARGILNNNDMANDQ 211

Query: 278 NEEXXXXXXXXXXXXXXXXXXXXXVNNSILYNSSLSHRDPGLHLAFGSKKSKHGDSIHDS 308
           N E                     VNNS+LYN++L+HRDPGLHLAF    +     + D 
Sbjct: 212 NNEASKAPNSSMPTNTFLNSNFQSVNNSLLYNANLTHRDPGLHLAFSRNPTGERSGVDDH 263

The following BLAST results are available for this feature:
BLAST of CsaV3_3G007800 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004133796.11.1e-149100.00PREDICTED: leucine-rich repeat extensin-like protein 5 [Cucumis sativus] >KGN563... [more]
XP_008437849.12.2e-12184.19PREDICTED: microtubule-associated protein RP/EB family member 1-like [Cucumis me... [more]
XP_022974813.14.1e-7558.90DNA-directed RNA polymerase II subunit 1-like isoform X1 [Cucurbita maxima][more]
XP_022974814.14.1e-7558.90DNA-directed RNA polymerase II subunit 1-like isoform X2 [Cucurbita maxima] >XP_... [more]
XP_022147442.15.2e-7054.28proline-rich receptor-like protein kinase PERK2 [Momordica charantia][more]
BLAST of CsaV3_3G007800 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G007800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G007800 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L5T3|A0A0A0L5T3_CUCSA7.6e-150100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119290 PE=4 SV=1[more]
tr|A0A1S3AVJ6|A0A1S3AVJ6_CUCME1.5e-12184.19microtubule-associated protein RP/EB family member 1-like OS=Cucumis melo OX=365... [more]
tr|A0A1S3AV38|A0A1S3AV38_CUCME2.9e-2437.54zyxin-like OS=Cucumis melo OX=3656 GN=LOC103483158 PE=4 SV=1[more]
tr|A0A0A0L320|A0A0A0L320_CUCSA7.1e-2336.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119300 PE=4 SV=1[more]
tr|A0A0A0L3R5|A0A0A0L3R5_CUCSA7.4e-1231.54Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119280 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G007800.1CsaV3_3G007800.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 227..265
NoneNo IPR availablePANTHERPTHR33472FAMILY NOT NAMEDcoord: 9..302

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G007800CmaCh06G009840Cucurbita maxima (Rimu)cmacucB0980
CsaV3_3G007800Cp4.1LG08g00690Cucurbita pepo (Zucchini)cpecucB1058
CsaV3_3G007800CsGy3G007800Cucumber (Gy14) v2cgybcucB117
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G007800Silver-seed gourdcarcucB0141
CsaV3_3G007800Silver-seed gourdcarcucB1037
CsaV3_3G007800Cucumber (Gy14) v2cgybcucB211
CsaV3_3G007800Cucumber (Gy14) v1cgycucB325
CsaV3_3G007800Cucumber (Gy14) v1cgycucB387
CsaV3_3G007800Cucurbita maxima (Rimu)cmacucB0291
CsaV3_3G007800Cucurbita maxima (Rimu)cmacucB0721
CsaV3_3G007800Cucurbita maxima (Rimu)cmacucB0965
CsaV3_3G007800Cucurbita moschata (Rifu)cmocucB0283
CsaV3_3G007800Cucurbita moschata (Rifu)cmocucB0374
CsaV3_3G007800Cucurbita moschata (Rifu)cmocucB0707
CsaV3_3G007800Cucurbita moschata (Rifu)cmocucB0953
CsaV3_3G007800Cucurbita moschata (Rifu)cmocucB1043
CsaV3_3G007800Cucurbita pepo (Zucchini)cpecucB0759
CsaV3_3G007800Wild cucumber (PI 183967)cpicucB144
CsaV3_3G007800Wild cucumber (PI 183967)cpicucB263
CsaV3_3G007800Bottle gourd (USVL1VR-Ls)cuclsiB164
CsaV3_3G007800Bottle gourd (USVL1VR-Ls)cuclsiB228
CsaV3_3G007800Melon (DHL92) v3.5.1cucmeB168
CsaV3_3G007800Melon (DHL92) v3.5.1cucmeB236
CsaV3_3G007800Melon (DHL92) v3.6.1cucmedB158
CsaV3_3G007800Melon (DHL92) v3.6.1cucmedB230
CsaV3_3G007800Watermelon (Charleston Gray)cucwcgB207
CsaV3_3G007800Watermelon (Charleston Gray)cucwcgB225
CsaV3_3G007800Watermelon (97103) v1cucwmB239
CsaV3_3G007800Watermelon (97103) v1cucwmB267
CsaV3_3G007800Watermelon (97103) v2cucwmbB174
CsaV3_3G007800Watermelon (97103) v2cucwmbB206
CsaV3_3G007800Wax gourdcucwgoB264
CsaV3_3G007800Wax gourdcucwgoB288
CsaV3_3G007800Cucumber (Chinese Long) v3cuccucB119