CsGy3G007800 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G007800
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	microtubule-associated protein RP/EB family member 1-like
Location	Chr3 : 6658753 .. 6660514 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAATTCCATTTCACCATCTCTACCTATTATTATTATAAATTGGAATAAACTTAGCTTTTTAATTTTAATTATTTTTTATTAATTATGTCAAATCTTCCTCGTTTCGGCCGTCAATGGAACCGCTTCTCTTCTCTGCCGCGTCCTGGTACTGCCACCCGCCCGGAACCTCAACCATTCACGGCGGCCACCGAGCCCGAAGTTTTTCCCTCAGCTGTACCAACCACTAATACTTTTCAAACGTCTCCTATAAAACAAAGAACCCCTCGTCTTTCATCTCCGGTTAAAAAATTTCCCTCGCCCCCGTCTTCTCCAAAATATAGCGGCGCCGGCACCGTTTCCCCTCGTAAACCACTATCTCCACCTCCGGTGCATAACCGTTACGATGGTGAACGTCGGACTAGTGCCACAACATCTCCCAAAACCTTTAAACCCACCCATATCTCTCCCCCACCGTCTCCGTCCAAGCCTAGACACTCTACCGTTCCCACCGCTGTTGCACCACTCTCTCCTCTGGCTCTGCCGCGATCGCAGGTGAGACGTGAACCTGAACACTCCCTTCGACCTCGGAGCCCGCCGGAGGTAATTAGTTAAATTAATTAACGTAAAGTTTCTAGCTCACTCAATGGTCTCTTCATATATTTAATTAATTACAATAAACTTATTTCATCGTAACCCATATTATAATAGATTGCAACATAACCATCGATCTTAAGAGTGATGATTAATGACTTTATTTACATCAACGCTAAACAGATCGAACAAAAAAAGATTCTTTACCAGACGACAACAACCGAGAAGCCAACAAAAACCGATCATTACCGCCAAAACGATGAGTACGGCGCGAGTAAACCCAGCAGAAGCAGCAGCATCAGCAGCTGCAGAGTGACGTTATAAACATAAAAGGGGAGAACGTAGGGGCAGTGATGCACATCACACAATCATCTGATGGCTCAGAAGTAATAAAGAAAAAGCCAACCGTTGGACAAAGCAAAGAAAATGAAGAGAAAACAAACAAATCAAATTCAAATTATCCAGGGAAGTCGTTTATGAACAGCAATTTTCAAGGCGTTAACAATTCTATTCTTTACAATTCTTCTTTAAGCCACCGTGATCCAGGTCTCCACCTTGCTTTTGGCTCGAAGAAGTCTAAACATGGCGATTCAATTCATGATTCAAGGCACTAAAGTATATATGGACCAGTTATTATATATTCTATATACTTATATATTATTTAAGCTGCTGAAAAAATAATCATAAATATAATAAAACAACAATATCACAGCAACAATATAATAATAGTTATTATACCATTTTATGTTGATATTTATATTTATATCTTCATATGGAACATGTATTTCCACTCTATAAAAGTTATGTAATTGTTGGCTTAAGTATTTGGAAAATGAGTTGTTAATAATAAAGAGCTACGGTGAGATATATTAATGCTAATGTTAAAAAACAGTATTAGTTTAATCAAGACTTGTGATTTCAATTATTGTTACTTATAATTAGAAAAGTGTGTATATGTATATGTTTCATTCCTTCTTAATTTCTGAAATTTTCAATTGACTTAAAGCAAAATTGTATAGAAATTCATATGGTATTAAAGCAGTGTGTTTAATGTATATATAGTTAATGTAATGTTTATGATCCATATATAATTTTAAGAAATTAAAGCAAAATTTAATCCTTTAATTACGTCAAAATCACACTTGATAAAGCACTTGTGAACATGCTTTTCAAACAAGTGAAAAGTACTTT

mRNA sequence

TCAATTCCATTTCACCATCTCTACCTATTATTATTATAAATTGGAATAAACTTAGCTTTTTAATTTTAATTATTTTTTATTAATTATGTCAAATCTTCCTCGTTTCGGCCGTCAATGGAACCGCTTCTCTTCTCTGCCGCGTCCTGGTACTGCCACCCGCCCGGAACCTCAACCATTCACGGCGGCCACCGAGCCCGAAGTTTTTCCCTCAGCTGTACCAACCACTAATACTTTTCAAACGTCTCCTATAAAACAAAGAACCCCTCGTCTTTCATCTCCGGTTAAAAAATTTCCCTCGCCCCCGTCTTCTCCAAAATATAGCGGCGCCGGCACCGTTTCCCCTCGTAAACCACTATCTCCACCTCCGGTGCATAACCGTTACGATGGTGAACGTCGGACTAGTGCCACAACATCTCCCAAAACCTTTAAACCCACCCATATCTCTCCCCCACCGTCTCCGTCCAAGCCTAGACACTCTACCGTTCCCACCGCTGTTGCACCACTCTCTCCTCTGGCTCTGCCGCGATCGCAGGTGAGACGTGAACCTGAACACTCCCTTCGACCTCGGAGCCCGCCGGAGATCGAACAAAAAAAGATTCTTTACCAGACGACAACAACCGAGAAGCCAACAAAAACCGATCATTACCGCCAAAACGATGAGTACGGCGCGAGTAAACCCAGCAGAAGCAGCAGCATCAGCAGCTGCAGAGTGACGTTATAAACATAAAAGGGGAGAACGTAGGGGCAGTGATGCACATCACACAATCATCTGATGGCTCAGAAGTAATAAAGAAAAAGCCAACCGTTGGACAAAGCAAAGAAAATGAAGAGAAAACAAACAAATCAAATTCAAATTATCCAGGGAAGTCGTTTATGAACAGCAATTTTCAAGGCGTTAACAATTCTATTCTTTACAATTCTTCTTTAAGCCACCGTGATCCAGGTCTCCACCTTGCTTTTGGCTCGAAGAAGTCTAAACATGGCGATTCAATTCATGATTCAAGGCACTAAAGTATATATGGACCAGTTATTATATATTCTATATACTTATATATTATTTAAGCTGCTGAAAAAATAATCATAAATATAATAAAACAACAATATCACAGCAACAATATAATAATAGTTATTATACCATTTTATGTTGATATTTATATTTATATCTTCATATGGAACATGTATTTCCACTCTATAAAAGTTATGTAATTGTTGGCTTAAGTATTTGGAAAATGAGTTGTTAATAATAAAGAGCTACGGTGAGATATATTAATGCTAATGTTAAAAAACAGTATTAGTTTAATCAAGACTTGTGATTTCAATTATTGTTACTTATAATTAGAAAAGTGTGTATATGTATATGTTTCATTCCTTCTTAATTTCTGAAATTTTCAATTGACTTAAAGCAAAATTGTATAGAAATTCATATGGTATTAAAGCAGTGTGTTTAATGTATATATAGTTAATGTAATGTTTATGATCCATATATAATTTTAAGAAATTAAAGCAAAATTTAATCCTTTAATTACGTCAAAATCACACTTGATAAAGCACTTGTGAACATGCTTTTCAAACAAGTGAAAAGTACTTT

Coding sequence (CDS)

ATGTCAAATCTTCCTCGTTTCGGCCGTCAATGGAACCGCTTCTCTTCTCTGCCGCGTCCTGGTACTGCCACCCGCCCGGAACCTCAACCATTCACGGCGGCCACCGAGCCCGAAGTTTTTCCCTCAGCTGTACCAACCACTAATACTTTTCAAACGTCTCCTATAAAACAAAGAACCCCTCGTCTTTCATCTCCGGTTAAAAAATTTCCCTCGCCCCCGTCTTCTCCAAAATATAGCGGCGCCGGCACCGTTTCCCCTCGTAAACCACTATCTCCACCTCCGGTGCATAACCGTTACGATGGTGAACGTCGGACTAGTGCCACAACATCTCCCAAAACCTTTAAACCCACCCATATCTCTCCCCCACCGTCTCCGTCCAAGCCTAGACACTCTACCGTTCCCACCGCTGTTGCACCACTCTCTCCTCTGGCTCTGCCGCGATCGCAGGTGAGACGTGAACCTGAACACTCCCTTCGACCTCGGAGCCCGCCGGAGATCGAACAAAAAAAGATTCTTTACCAGACGACAACAACCGAGAAGCCAACAAAAACCGATCATTACCGCCAAAACGATGAGTACGGCGCGAGTAAACCCAGCAGAAGCAGCAGCATCAGCAGCTGCAGAGTGACGTTATAA

Protein sequence

MSNLPRFGRQWNRFSSLPRPGTATRPEPQPFTAATEPEVFPSAVPTTNTFQTSPIKQRTPRLSSPVKKFPSPPSSPKYSGAGTVSPRKPLSPPPVHNRYDGERRTSATTSPKTFKPTHISPPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKILYQTTTTEKPTKTDHYRQNDEYGASKPSRSSSISSCRVTL

Homology

[Close]

BLAST of CsGy3G007800 vs. NCBI nr
Match: XP_004133796.1 (PREDICTED: leucine-rich repeat extensin-like protein 5 [Cucumis sativus] >KGN56394.1 hypothetical protein Csa_3G119290 [Cucumis sativus])

HSP 1 Score: 370.5 bits (950), Expect = 3.7e-99
Identity = 191/200 (95.50%), Postives = 193/200 (96.50%), Query Frame = 0


Query: 1   MSNLPRFGRQWNRFSSLPRPGTATRPEPQPFTAATEPEVFPSAVPTTNTFQTSPIKQRTP 60
           MSNLPRFGRQWNRFSSLPRPGTATRPEPQPFTAATEPEVFPSAVPTTNTFQTSPIKQRTP
Sbjct: 1   MSNLPRFGRQWNRFSSLPRPGTATRPEPQPFTAATEPEVFPSAVPTTNTFQTSPIKQRTP 60

Query: 61  RLSSPVKKFPSPPSSPKYSGAGTVSPRKPLSPPPVHNRYDGERRTSATTSPKTFKPTHIS 120
           RLSSPVKKF SPPSSPKYSGAGTVSPR PL    VHNRY+GERRTSATTSPKTFKPTHIS
Sbjct: 61  RLSSPVKKFSSPPSSPKYSGAGTVSPRXPLXXXXVHNRYEGERRTSATTSPKTFKPTHIS 120

Query: 121 PPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKILYQTTTTEK 180
           PPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKILYQTTTTEK
Sbjct: 121 PPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKILYQTTTTEK 180

Query: 181 PTKTDHYRQNDEYGASKPSR 201
           PTKTDHYRQNDEYGASKP +
Sbjct: 181 PTKTDHYRQNDEYGASKPQQ 200

[Close]

BLAST of CsGy3G007800 vs. NCBI nr
Match: XP_008437849.1 (PREDICTED: microtubule-associated protein RP/EB family member 1-like [Cucumis melo])

HSP 1 Score: 315.8 bits (808), Expect = 1.1e-82
Identity = 170/202 (84.16%), Postives = 179/202 (88.61%), Query Frame = 0


Query: 1   MSNLPRFGRQWNRFSSLPRPGTATRPEPQP-FTAATEPEVFPSAVPTTNTFQTSPIKQRT 60
           MSNLPRFGR WNRFSSLPRP TA R E QP FTAATEPEVFPSAVPTTNT QTSP+KQRT
Sbjct: 1   MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT 60

Query: 61  PRLSSPVKKFPSPPSSPKYSGA-GTVSPRKPLSPPPVHNRYDGERRTSATTSPKTFKPTH 120
           PRLSSPVKKFPSPPSSPKYSGA GT+SPRKPLSPP  +NR+DGERRTSATTSPKTFKPT+
Sbjct: 61  PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY 120

Query: 121 ISPPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKILYQTTTT 180
           ISPPPS     HST  T VAPLSPLALPRS+VRREPE S+RPRSPPEIEQKKILYQTTTT
Sbjct: 121 ISPPPSXXXXXHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEIEQKKILYQTTTT 180

Query: 181 EKPTKTDHYRQNDEYGASKPSR 201
           EKPTKTD YRQ D+YG SKP +
Sbjct: 181 EKPTKTD-YRQTDQYGTSKPQQ 201

[Close]

BLAST of CsGy3G007800 vs. NCBI nr
Match: XP_022147442.1 (proline-rich receptor-like protein kinase PERK2 [Momordica charantia])

HSP 1 Score: 190.7 bits (483), Expect = 5.2e-45
Identity = 113/202 (55.94%), Postives = 136/202 (67.33%), Query Frame = 0


Query: 1   MSNLPRFGRQWNRFSSLPRPGTATRPEPQPFTAATEP----EVFPSAVPTTNTFQTSPIK 60
           M+NLPRFGR W RFSSLPRP TA++P               E+ P++  T    QTSPI+
Sbjct: 1   MANLPRFGRTWQRFSSLPRPATASQPXXXXXXXXXXXMNGREISPNSPVTAQVLQTSPIR 60

Query: 61  QRTPRLSSPVKKFPSPPSSPKYSGAGTVSPRKPLSPPPVHNRYDGERRTSATTSPKTFKP 120
           +R+ RL SP KKF SPPSSPKY  A   SP KPLSP P +NRYDGERR+SATTSPK  KP
Sbjct: 61  ERSSRLPSPTKKFASPPSSPKYRPAAAASPPKPLSPTPSYNRYDGERRSSATTSPKAIKP 120

Query: 121 THISPPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKILYQTT 180
           ++ SPP SP+K ++ T  TA APLSPL LPRS+ + EP  ++R RSPPE+EQK I Y   
Sbjct: 121 SYTSPPLSPAKHKYPTAATA-APLSPLTLPRSEAKHEPGPTIRSRSPPEVEQKSIHY--P 180

Query: 181 TTEKPTKTDHYRQNDEYGASKP 199
             EKPTK DH  +  EY + KP
Sbjct: 181 KVEKPTKPDH--RPSEYNSGKP 197

[Close]

BLAST of CsGy3G007800 vs. NCBI nr
Match: XP_022974813.1 (DNA-directed RNA polymerase II subunit 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 166.4 bits (420), Expect = 1.1e-37
Identity = 105/204 (51.47%), Postives = 125/204 (61.27%), Query Frame = 0


Query: 1   MSNLPRFGRQWNRFSSLPRPGTATRPEPQPFTAATEPEVFPSAVPTTNTFQTSPIKQRTP 60
           M+NLPRFGR WNRFSSLPRP TA R +  P  A +EPEVF SA PT N  QTSPIK+R+P
Sbjct: 1   MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60

Query: 61  R-LSSPVKKFPSPPSSPKYSGAGTVSPRKPLSPPPVHNRYDGERRTSATTSPKTFKPTHI 120
           R                                     RYDGERR+SA  SPKTFK T+ 
Sbjct: 61  RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYDGERRSSAQASPKTFKTTYT 120

Query: 121 SPPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKILYQTTTTE 180
           SPP SP+K ++ST  T  APLSPLALP  + R EPE  +RPRSPPE++QK +LYQ TT+E
Sbjct: 121 SPPRSPAKHKYST-STVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTSE 180

Query: 181 KPTKTDHYRQNDEYGASKPSRSSS 204
           KP KTDH  +  EY + KP +  +
Sbjct: 181 KPAKTDH--RASEYSSGKPQQKQT 201

[Close]

BLAST of CsGy3G007800 vs. NCBI nr
Match: XP_022974814.1 (DNA-directed RNA polymerase II subunit 1-like isoform X2 [Cucurbita maxima] >XP_022974815.1 DNA-directed RNA polymerase II subunit 1-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 166.4 bits (420), Expect = 1.1e-37
Identity = 105/204 (51.47%), Postives = 125/204 (61.27%), Query Frame = 0


Query: 1   MSNLPRFGRQWNRFSSLPRPGTATRPEPQPFTAATEPEVFPSAVPTTNTFQTSPIKQRTP 60
           M+NLPRFGR WNRFSSLPRP TA R +  P  A +EPEVF SA PT N  QTSPIK+R+P
Sbjct: 1   MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60

Query: 61  R-LSSPVKKFPSPPSSPKYSGAGTVSPRKPLSPPPVHNRYDGERRTSATTSPKTFKPTHI 120
           R                                     RYDGERR+SA  SPKTFK T+ 
Sbjct: 61  RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYDGERRSSAQASPKTFKTTYT 120

Query: 121 SPPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKILYQTTTTE 180
           SPP SP+K ++ST  T  APLSPLALP  + R EPE  +RPRSPPE++QK +LYQ TT+E
Sbjct: 121 SPPRSPAKHKYST-STVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTSE 180

Query: 181 KPTKTDHYRQNDEYGASKPSRSSS 204
           KP KTDH  +  EY + KP +  +
Sbjct: 181 KPAKTDH--RASEYSSGKPQQKQT 201

[Close]

BLAST of CsGy3G007800 vs. TrEMBL
Match: tr|A0A0A0L5T3|A0A0A0L5T3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119290 PE=4 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 2.4e-99
Identity = 191/200 (95.50%), Postives = 193/200 (96.50%), Query Frame = 0


Query: 1   MSNLPRFGRQWNRFSSLPRPGTATRPEPQPFTAATEPEVFPSAVPTTNTFQTSPIKQRTP 60
           MSNLPRFGRQWNRFSSLPRPGTATRPEPQPFTAATEPEVFPSAVPTTNTFQTSPIKQRTP
Sbjct: 1   MSNLPRFGRQWNRFSSLPRPGTATRPEPQPFTAATEPEVFPSAVPTTNTFQTSPIKQRTP 60

Query: 61  RLSSPVKKFPSPPSSPKYSGAGTVSPRKPLSPPPVHNRYDGERRTSATTSPKTFKPTHIS 120
           RLSSPVKKF SPPSSPKYSGAGTVSPR PL    VHNRY+GERRTSATTSPKTFKPTHIS
Sbjct: 61  RLSSPVKKFSSPPSSPKYSGAGTVSPRXPLXXXXVHNRYEGERRTSATTSPKTFKPTHIS 120

Query: 121 PPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKILYQTTTTEK 180
           PPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKILYQTTTTEK
Sbjct: 121 PPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKILYQTTTTEK 180

Query: 181 PTKTDHYRQNDEYGASKPSR 201
           PTKTDHYRQNDEYGASKP +
Sbjct: 181 PTKTDHYRQNDEYGASKPQQ 200

[Close]

BLAST of CsGy3G007800 vs. TrEMBL
Match: tr|A0A1S3AVJ6|A0A1S3AVJ6_CUCME (microtubule-associated protein RP/EB family member 1-like OS=Cucumis melo OX=3656 GN=LOC103483157 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 7.1e-83
Identity = 170/202 (84.16%), Postives = 179/202 (88.61%), Query Frame = 0


Query: 1   MSNLPRFGRQWNRFSSLPRPGTATRPEPQP-FTAATEPEVFPSAVPTTNTFQTSPIKQRT 60
           MSNLPRFGR WNRFSSLPRP TA R E QP FTAATEPEVFPSAVPTTNT QTSP+KQRT
Sbjct: 1   MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT 60

Query: 61  PRLSSPVKKFPSPPSSPKYSGA-GTVSPRKPLSPPPVHNRYDGERRTSATTSPKTFKPTH 120
           PRLSSPVKKFPSPPSSPKYSGA GT+SPRKPLSPP  +NR+DGERRTSATTSPKTFKPT+
Sbjct: 61  PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY 120

Query: 121 ISPPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKILYQTTTT 180
           ISPPPS     HST  T VAPLSPLALPRS+VRREPE S+RPRSPPEIEQKKILYQTTTT
Sbjct: 121 ISPPPSXXXXXHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEIEQKKILYQTTTT 180

Query: 181 EKPTKTDHYRQNDEYGASKPSR 201
           EKPTKTD YRQ D+YG SKP +
Sbjct: 181 EKPTKTD-YRQTDQYGTSKPQQ 201

[Close]

BLAST of CsGy3G007800 vs. TrEMBL
Match: tr|A0A1S3AV38|A0A1S3AV38_CUCME (zyxin-like OS=Cucumis melo OX=3656 GN=LOC103483158 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 9.5e-11
Identity = 80/205 (39.02%), Postives = 104/205 (50.73%), Query Frame = 0


Query: 1   MSNLPRFGRQWNRFSSLPRPGTATRPEPQPFTAATEP--EVFPSAVPTTNTFQTSPIKQR 60
           M+NLPRFGR   R  ++P P  A     QP   A EP  ++ P A   T     SP ++ 
Sbjct: 1   MANLPRFGRARQRLPAVPPPVPAA---AQP---AVEPRYQILPFATTITTPAPASPRRES 60

Query: 61  TPRLSSPVKKFPSPPSSPKYSGAGTVSPRKP-----LSPP-PVHNRYDGERRTSATTSPK 120
              LSSP KK  SP +SPKY  + T   R P     +SPP  V ++Y  ERR   TT   
Sbjct: 61  PRPLSSPPKKATSPFASPKYGDSRTRLDRSPAAKATMSPPDSVRDKY-FERRNGETT--- 120

Query: 121 TFKPTHISPPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKIL 180
                   PP SP+K R +          PLALPR+QV      + +PR  PE+E K I+
Sbjct: 121 --------PPLSPAKSRRA----KTXXXXPLALPRNQVFTGNGTTAQPRVQPEVETKGIV 180

Query: 181 YQTTTTEKPTKTDHYRQNDEYGASK 198
           Y   T EKP+K++  R + EYG+SK
Sbjct: 181 Y-NKTVEKPSKSN--RSSGEYGSSK 180

[Close]

BLAST of CsGy3G007800 vs. TrEMBL
Match: tr|A0A0A0L320|A0A0A0L320_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119300 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 8.0e-10
Identity = 73/198 (36.87%), Postives = 98/198 (49.49%), Query Frame = 0


Query: 1   MSNLPRFGRQWNRFSSLPRP-GTATRPEPQPFTAATEPEVFPSAVPTTNTFQTSPIKQRT 60
           M+NLPR GR   R SS+P P   A +P  +P     + E  P A   T     SP ++  
Sbjct: 1   MANLPRLGRTRQRLSSVPPPVPAAAQPAVEP-----KYETMPYATSITTPAPASPRRESP 60

Query: 61  PRLSSPVKKFPSPPSSPKYSGAGTVSPRKPLSPPPVHNRYDGERRTSATTSPKTFKPTHI 120
             LSSP KK  SP +S   S     + R P  P  + ++Y  ERR   TT          
Sbjct: 61  RPLSSPSKKATSPFASRVDSSPAAKATRSP--PDSIGDKY-LERRNGETT---------- 120

Query: 121 SPPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKILYQTTTTE 180
            PP +P+K R    P   +PLSPLALPRSQV      + +PR  PE+E K I+Y     E
Sbjct: 121 -PPLTPAKSR----PAKTSPLSPLALPRSQVITGNGTTAQPRVQPEVETKGIVYNKAADE 172

Query: 181 KPTKTDHYRQNDEYGASK 198
           KP+K++   +  E+G+ K
Sbjct: 181 KPSKSN---RQSEHGSGK 172

The following BLAST results are available for this feature:

BLAST of CsGy3G007800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004133796.1	3.7e-99	95.50	PREDICTED: leucine-rich repeat extensin-like protein 5 [Cucumis sativus] >KGN563...	[more]
XP_008437849.1	1.1e-82	84.16	PREDICTED: microtubule-associated protein RP/EB family member 1-like [Cucumis me...	[more]
XP_022147442.1	5.2e-45	55.94	proline-rich receptor-like protein kinase PERK2 [Momordica charantia]	[more]
XP_022974813.1	1.1e-37	51.47	DNA-directed RNA polymerase II subunit 1-like isoform X1 [Cucurbita maxima]	[more]
XP_022974814.1	1.1e-37	51.47	DNA-directed RNA polymerase II subunit 1-like isoform X2 [Cucurbita maxima] >XP_...	[more]

BLAST of CsGy3G007800 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy3G007800 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G007800 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L5T3\|A0A0A0L5T3_CUCSA	2.4e-99	95.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119290 PE=4 SV=1	[more]
tr\|A0A1S3AVJ6\|A0A1S3AVJ6_CUCME	7.1e-83	84.16	microtubule-associated protein RP/EB family member 1-like OS=Cucumis melo OX=365...	[more]
tr\|A0A1S3AV38\|A0A1S3AV38_CUCME	9.5e-11	39.02	zyxin-like OS=Cucumis melo OX=3656 GN=LOC103483158 PE=4 SV=1	[more]
tr\|A0A0A0L320\|A0A0A0L320_CUCSA	8.0e-10	36.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119300 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G007800.1	CsGy3G007800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 194..211

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G007800	Cla021126	Watermelon (97103) v1	cgybwmB217
CsGy3G007800	Csa3G119290	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G007800	MELO3C005996	Melon (DHL92) v3.5.1	cgybmeB200
CsGy3G007800	ClCG05G000590	Watermelon (Charleston Gray)	cgybwcgB203
CsGy3G007800	CSPI03G07660	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G007800	CmaCh06G009840	Cucurbita maxima (Rimu)	cgybcmaB443
CsGy3G007800	CmoCh14G021910	Cucurbita moschata (Rifu)	cgybcmoB290
CsGy3G007800	Lsi05G021570	Bottle gourd (USVL1VR-Ls)	cgyblsiB196
CsGy3G007800	Cp4.1LG08g00670	Cucurbita pepo (Zucchini)	cgybcpeB454
CsGy3G007800	MELO3C005996.2	Melon (DHL92) v3.6.1	cgybmedB201
CsGy3G007800	CsaV3_3G007800	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G007800	Cla97C05G080640	Watermelon (97103) v2	cgybwmbB196
CsGy3G007800	Bhi01G000386	Wax gourd	cgybwgoB272

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G007800	Cucumber (Gy14) v2	cgybcgybB085
CsGy3G007800	Cucurbita maxima (Rimu)	cgybcmaB318
CsGy3G007800	Cucurbita maxima (Rimu)	cgybcmaB401
CsGy3G007800	Cucurbita maxima (Rimu)	cgybcmaB430
CsGy3G007800	Cucurbita moschata (Rifu)	cgybcmoB372
CsGy3G007800	Cucurbita moschata (Rifu)	cgybcmoB401
CsGy3G007800	Cucurbita moschata (Rifu)	cgybcmoB430
CsGy3G007800	Cucurbita pepo (Zucchini)	cgybcpeB406
CsGy3G007800	Cucurbita pepo (Zucchini)	cgybcpeB428
CsGy3G007800	Cucumber (Chinese Long) v2	cgybcuB125
CsGy3G007800	Bottle gourd (USVL1VR-Ls)	cgyblsiB137
CsGy3G007800	Melon (DHL92) v3.5.1	cgybmeB142
CsGy3G007800	Melon (DHL92) v3.6.1	cgybmedB139
CsGy3G007800	Watermelon (Charleston Gray)	cgybwcgB189
CsGy3G007800	Watermelon (97103) v1	cgybwmB243
CsGy3G007800	Wild cucumber (PI 183967)	cgybcpiB126
CsGy3G007800	Silver-seed gourd	carcgybB0131
CsGy3G007800	Silver-seed gourd	carcgybB0980
CsGy3G007800	Cucumber (Chinese Long) v3	cgybcucB130
CsGy3G007800	Watermelon (97103) v2	cgybwmbB166
CsGy3G007800	Wax gourd	cgybwgoB249