Lsi05G021570 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CATTTTTTAAACTTAACACTCTTTTTTTTAATTAATTATTATTATTATTATTATCAATTATGTCAAATCTTCCTCGTTTTGGCCGTACATGGCAACGCTTCTCTTCTTTGCCCCGTCCTGGTACTGCCTCACGGCCAGAAATTCAACCGTTGACGGCGACGACGGAGCCGGAAGTTTATTCCTCTGCTCCAACAACCACTAATATTCTTCAAACTTCTCCTATAAGAGAAAGATCCCCTCGAGTTCCATCTCCAGTCAGAAAATTTCCCTCGCCGCCTTCTTCTCCAAAATATGGCGTCGCCACCACAATTTCGCCTCGCAAACCACTATCTCCAACTCAGACCACGTACAACCGTTACGACGGCGAACGCCGCACCAGTGCCACAACATCTCCCAAAGCCTTCAAGCCCACCCAAATCTCTCCGCCATTATCTCCGCCCAAGCCTAAACATTCTACCATTGCCTCCATTGCCACCGCTGCACCACTCTCTCCACTGGCTCTGCCGCGCTCGGAGGTGAGACGTGAACCTGAGCACACCATTCGATCCAGGAGCCCACCAGAGGTTAGTTAAATTACCACCAAATTCATTAGCTTAAGCTAAAACCGTCTTCCGACATCAAATTGATTGTTATAGCATGTGGTTGGATAAAATAACTAAGAAATAGTTAACGTCTGGATTTCAAATATTATTACGTAGTTAATTGGAGATTATAATATTTGAAAAATACTAAGTATTATAATAAAATATTGGGTGGACTCCACCCAGTTGACGTTGAGGTCCAAACAACTCCTTATAATTTTGCTTTTGAAATTATCTTCATTCCATTCAAGATAATTTATGTCCTTACTAATATTCCATGATATTTATGTTATCTAACTAATGTATAACTTTAGCTGCATTTCCTAGGTTAATAAAAAACAAATAAATATCCATTATTATTATTATTTTAAATAAAAATACTTAGATGCATCACGAGCTATCACTTAATTTTATGCATCTCACTAAATTGTACGATCATAATTTGATATGTGGTAAAAATATCTTAAACTTTTTAGTATGAATGATAAGAGTGGATGCATAAAGATAGATGCATCTTGAGGTTATAGGTTATTATTTTTTTTTCCTCAAATTTATATAGATATATTTATGAGTCAAAGATATTTAAAATGGTAATTAATGACTTATCAACCAAATAGGTAGAACAGAAAAAGATCCTTTACCAAACGTCAACTGAGAAGACAACAAAAACTGAGCACCGACAACCGGAGTACATCTCCAGCAAACCCCAACAGAAGCAGCAACATCAGCAGTTGCAAAGTGATGTTATAAACATAAAAGGCGAGAACGTAGGGGCGGTGATGCACATCACACAATCATCTGATGGCTCAGAAATCCTGAAGAAAAAGCCGAGCAAGGACAAGGAAAACGAAGAGAAAGCAAACAAATCAGCTGCAAATTATCCAGGAAAATCCTTCATGAACAGCAATTTTCAAGGCGTCAACAATTCTATTCTCTACAATTCGTCTTTAAGCCACCGTGATCCAGGCCTCCACCTTGCTTACTCCAAGAAGCCTAACCATCGCGATTCTCTTCATGATTCAAGCCACTAATTAAAACCGACCAATTATATATATATATATATATTATTTAAGCTGCTCAAATAATTATAAATATAATAAACCAACAATATAATATCATCATCATCATAATAATAATAATTAAAACATTTTATATTCATATATATATATATATTTATCTTCATATGGGATGTGTGTTACCATTCTATAAAATATGTAATTGTGTTACTATTTGGAAAAATGAGTTATTAGTAATAAAAGCTTCGGTGAGATATATATATATAAATTCTTAATCTTCATTTTCT CATTTTTTAAACTTAACACTCTTTTTTTTAATTAATTATTATTATTATTATTATCAATTATGTCAAATCTTCCTCGTTTTGGCCGTACATGGCAACGCTTCTCTTCTTTGCCCCGTCCTGGTACTGCCTCACGGCCAGAAATTCAACCGTTGACGGCGACGACGGAGCCGGAAGTTTATTCCTCTGCTCCAACAACCACTAATATTCTTCAAACTTCTCCTATAAGAGAAAGATCCCCTCGAGTTCCATCTCCAGTCAGAAAATTTCCCTCGCCGCCTTCTTCTCCAAAATATGGCGTCGCCACCACAATTTCGCCTCGCAAACCACTATCTCCAACTCAGACCACGTACAACCGTTACGACGGCGAACGCCGCACCAGTGCCACAACATCTCCCAAAGCCTTCAAGCCCACCCAAATCTCTCCGCCATTATCTCCGCCCAAGCCTAAACATTCTACCATTGCCTCCATTGCCACCGCTGCACCACTCTCTCCACTGGCTCTGCCGCGCTCGGAGGTGAGACGTGAACCTGAGCACACCATTCGATCCAGGAGCCCACCAGAGGTAGAACAGAAAAAGATCCTTTACCAAACGTCAACTGAGAAGACAACAAAAACTGAGCACCGACAACCGGAGTACATCTCCAGCAAACCCCAACAGAAGCAGCAACATCAGCAGTTGCAAAGTGATGTTATAAACATAAAAGGCGAGAACGTAGGGGCGGTGATGCACATCACACAATCATCTGATGGCTCAGAAATCCTGAAGAAAAAGCCGAGCAAGGACAAGGAAAACGAAGAGAAAGCAAACAAATCAGCTGCAAATTATCCAGGAAAATCCTTCATGAACAGCAATTTTCAAGGCGTCAACAATTCTATTCTCTACAATTCGTCTTTAAGCCACCGTGATCCAGGCCTCCACCTTGCTTACTCCAAGAAGCCTAACCATCGCGATTCTCTTCATGATTCAAGCCACTAATTAAAACCGACCAATTATATATATATATATATATTATTTAAGCTGCTCAAATAATTATAAATATAATAAACCAACAATATAATATCATCATCATCATAATAATAATAATTAAAACATTTTATATTCATATATATATATATATTTATCTTCATATGGGATGTGTGTTACCATTCTATAAAATATGTAATTGTGTTACTATTTGGAAAAATGAGTTATTAGTAATAAAAGCTTCGGTGAGATATATATATATAAATTCTTAATCTTCATTTTCT ATGTCAAATCTTCCTCGTTTTGGCCGTACATGGCAACGCTTCTCTTCTTTGCCCCGTCCTGGTACTGCCTCACGGCCAGAAATTCAACCGTTGACGGCGACGACGGAGCCGGAAGTTTATTCCTCTGCTCCAACAACCACTAATATTCTTCAAACTTCTCCTATAAGAGAAAGATCCCCTCGAGTTCCATCTCCAGTCAGAAAATTTCCCTCGCCGCCTTCTTCTCCAAAATATGGCGTCGCCACCACAATTTCGCCTCGCAAACCACTATCTCCAACTCAGACCACGTACAACCGTTACGACGGCGAACGCCGCACCAGTGCCACAACATCTCCCAAAGCCTTCAAGCCCACCCAAATCTCTCCGCCATTATCTCCGCCCAAGCCTAAACATTCTACCATTGCCTCCATTGCCACCGCTGCACCACTCTCTCCACTGGCTCTGCCGCGCTCGGAGGTGAGACGTGAACCTGAGCACACCATTCGATCCAGGAGCCCACCAGAGGTAGAACAGAAAAAGATCCTTTACCAAACGTCAACTGAGAAGACAACAAAAACTGAGCACCGACAACCGGAGTACATCTCCAGCAAACCCCAACAGAAGCAGCAACATCAGCAGTTGCAAAGTGATGTTATAAACATAAAAGGCGAGAACGTAGGGGCGGTGATGCACATCACACAATCATCTGATGGCTCAGAAATCCTGAAGAAAAAGCCGAGCAAGGACAAGGAAAACGAAGAGAAAGCAAACAAATCAGCTGCAAATTATCCAGGAAAATCCTTCATGAACAGCAATTTTCAAGGCGTCAACAATTCTATTCTCTACAATTCGTCTTTAAGCCACCGTGATCCAGGCCTCCACCTTGCTTACTCCAAGAAGCCTAACCATCGCGATTCTCTTCATGATTCAAGCCACTAA MSNLPRFGRTWQRFSSLPRPGTASRPEIQPLTATTEPEVYSSAPTTTNILQTSPIRERSPRVPSPVRKFPSPPSSPKYGVATTISPRKPLSPTQTTYNRYDGERRTSATTSPKAFKPTQISPPLSPPKPKHSTIASIATAAPLSPLALPRSEVRREPEHTIRSRSPPEVEQKKILYQTSTEKTTKTEHRQPEYISSKPQQKQQHQQLQSDVINIKGENVGAVMHITQSSDGSEILKKKPSKDKENEEKANKSAANYPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAYSKKPNHRDSLHDSSH
BLAST of Lsi05G021570 vs. TrEMBL
Match: A0A0A0L5T3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119290 PE=4 SV=1) HSP 1 Score: 428.3 bits (1100), Expect = 7.7e-117 Identity = 237/311 (76.21%), Postives = 265/311 (85.21%), Query Frame = 1
BLAST of Lsi05G021570 vs. TrEMBL
Match: A0A0A0L320_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119300 PE=4 SV=1) HSP 1 Score: 127.1 bits (318), Expect = 3.7e-26 Identity = 122/313 (38.98%), Postives = 167/313 (53.35%), Query Frame = 1
BLAST of Lsi05G021570 vs. TrEMBL
Match: A0A0A0L8G8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119310 PE=4 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 9.7e-19 Identity = 105/312 (33.65%), Postives = 145/312 (46.47%), Query Frame = 1
BLAST of Lsi05G021570 vs. TrEMBL
Match: A0A0A0L3R5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119280 PE=4 SV=1) HSP 1 Score: 85.1 bits (209), Expect = 1.6e-13 Identity = 84/242 (34.71%), Postives = 123/242 (50.83%), Query Frame = 1
BLAST of Lsi05G021570 vs. TrEMBL
Match: A0A0A0KAP9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G107920 PE=4 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 2.3e-12 Identity = 113/388 (29.12%), Postives = 154/388 (39.69%), Query Frame = 1
BLAST of Lsi05G021570 vs. TAIR10
Match: AT2G46630.1 (AT2G46630.1 unknown protein) HSP 1 Score: 72.8 bits (177), Expect = 4.2e-13 Identity = 110/397 (27.71%), Postives = 147/397 (37.03%), Query Frame = 1
BLAST of Lsi05G021570 vs. NCBI nr
Match: gi|659074888|ref|XP_008437849.1| (PREDICTED: microtubule-associated protein RP/EB family member 1-like [Cucumis melo]) HSP 1 Score: 431.8 bits (1109), Expect = 1.0e-117 Identity = 245/312 (78.53%), Postives = 270/312 (86.54%), Query Frame = 1
BLAST of Lsi05G021570 vs. NCBI nr
Match: gi|449432016|ref|XP_004133796.1| (PREDICTED: leucine-rich repeat extensin-like protein 5 [Cucumis sativus]) HSP 1 Score: 428.3 bits (1100), Expect = 1.1e-116 Identity = 237/311 (76.21%), Postives = 265/311 (85.21%), Query Frame = 1
BLAST of Lsi05G021570 vs. NCBI nr
Match: gi|659074890|ref|XP_008437851.1| (PREDICTED: serine/arginine repetitive matrix protein 1-like [Cucumis melo]) HSP 1 Score: 147.5 bits (371), Expect = 3.8e-32 Identity = 124/307 (40.39%), Postives = 164/307 (53.42%), Query Frame = 1
BLAST of Lsi05G021570 vs. NCBI nr
Match: gi|449432018|ref|XP_004133797.1| (PREDICTED: atherin-like [Cucumis sativus]) HSP 1 Score: 127.1 bits (318), Expect = 5.3e-26 Identity = 122/313 (38.98%), Postives = 167/313 (53.35%), Query Frame = 1
BLAST of Lsi05G021570 vs. NCBI nr
Match: gi|778676797|ref|XP_011650663.1| (PREDICTED: gibberellin-regulated protein 14-like [Cucumis sativus]) HSP 1 Score: 102.4 bits (254), Expect = 1.4e-18 Identity = 105/312 (33.65%), Postives = 145/312 (46.47%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |