Cp4.1LG08g00690 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG08g00690
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG08 : 4030208 .. 4030666 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATCTCTACCACCCCGCCAACGTTACTTTTCTCTTCCACGCCCTACTCCGACCACTGCCTCGTCTCAAATCCCACCGCCCGCCGTTGCCACTGCCGCCCCCATCCAGAAGCCTGCAAAATCTAATCACCATCAGCTGAGCAAGGCCATGAACATTAGAGGTGAAAGTGTTGGCGTTGTGATGCGTATTAATGAATCATGTGAAGGGATGGAAATAGTGAAGAACATGAAGAAGAAGAAAGGAAGTGAAGGAAATTATTATGATGGAAAGAACAAAATTATGATCATGGCTATGAATGGGAATTTTCAAGGTGTTAATAACTCGCTCTTGTTCAACTCTTCCTTCACTCAGGGTGATGCTGGCCTGCATTTTATGATATCTAAACACATTTTCAATCTAGAATTATTCATTGCTATAGTAATTTTCGAAATGAAGTGTTATAGTTGGAAAATATAA

mRNA sequence

ATGTCATCTCTACCACCCCGCCAACGTTACTTTTCTCTTCCACGCCCTACTCCGACCACTGCCTCGTCTCAAATCCCACCGCCCGCCGTTGCCACTGCCGCCCCCATCCAGAAGCCTGCAAAATCTAATCACCATCAGCTGAGCAAGGCCATGAACATTAGAGGTGAAAGTGTTGGCGTTGTGATGCGTATTAATGAATCATGTGAAGGGATGGAAATAGTGAAGAACATGAAGAAGAAGAAAGGAAGTGAAGGAAATTATTATGATGGAAAGAACAAAATTATGATCATGGCTATGAATGGGAATTTTCAAGGTGTTAATAACTCGCTCTTGTTCAACTCTTCCTTCACTCAGGGTGATGCTGGCCTGCATTTTATGATATCTAAACACATTTTCAATCTAGAATTATTCATTGCTATAGTAATTTTCGAAATGAAGTGTTATAGTTGGAAAATATAA

Coding sequence (CDS)

ATGTCATCTCTACCACCCCGCCAACGTTACTTTTCTCTTCCACGCCCTACTCCGACCACTGCCTCGTCTCAAATCCCACCGCCCGCCGTTGCCACTGCCGCCCCCATCCAGAAGCCTGCAAAATCTAATCACCATCAGCTGAGCAAGGCCATGAACATTAGAGGTGAAAGTGTTGGCGTTGTGATGCGTATTAATGAATCATGTGAAGGGATGGAAATAGTGAAGAACATGAAGAAGAAGAAAGGAAGTGAAGGAAATTATTATGATGGAAAGAACAAAATTATGATCATGGCTATGAATGGGAATTTTCAAGGTGTTAATAACTCGCTCTTGTTCAACTCTTCCTTCACTCAGGGTGATGCTGGCCTGCATTTTATGATATCTAAACACATTTTCAATCTAGAATTATTCATTGCTATAGTAATTTTCGAAATGAAGTGTTATAGTTGGAAAATATAA

Protein sequence

MSSLPPRQRYFSLPRPTPTTASSQIPPPAVATAAPIQKPAKSNHHQLSKAMNIRGESVGVVMRINESCEGMEIVKNMKKKKGSEGNYYDGKNKIMIMAMNGNFQGVNNSLLFNSSFTQGDAGLHFMISKHIFNLELFIAIVIFEMKCYSWKI
BLAST of Cp4.1LG08g00690 vs. TrEMBL
Match: A0A0A0L5T3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119290 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.2e-08
Identity = 43/104 (41.35%), Postives = 57/104 (54.81%), Query Frame = 1

Query: 41  KSNHHQL-SKAMNIRGESVGVVMRINESCEGMEIVKNM---------KKKKGSEGNYYDG 100
           K  H QL S  +NI+GE+VG VM I +S +G E++K           ++K     + Y G
Sbjct: 201 KQQHQQLQSDVINIKGENVGAVMHITQSSDGSEVIKKKPTVGQSKENEEKTNKSNSNYPG 260

Query: 101 KNKIMIMAMNGNFQGVNNSLLFNSSFTQGDAGLHFMI----SKH 131
           K+      MN NFQGVNNS+L+NSS +  D GLH       SKH
Sbjct: 261 KS-----FMNSNFQGVNNSILYNSSLSHRDPGLHLAFGSKKSKH 299

BLAST of Cp4.1LG08g00690 vs. NCBI nr
Match: gi|659074888|ref|XP_008437849.1| (PREDICTED: microtubule-associated protein RP/EB family member 1-like [Cucumis melo])

HSP 1 Score: 67.0 bits (162), Expect = 3.2e-08
Identity = 41/97 (42.27%), Postives = 54/97 (55.67%), Query Frame = 1

Query: 38  KPAKSNHHQL--SKAMNIRGESVGVVMRINESCEGMEIVKNM----KKKKGSEGNYYDGK 97
           KP +  HHQ   S  +NI+G++VG VM I +S +G EI+K      + K+  E       
Sbjct: 198 KPQQKQHHQQLQSDVINIKGDNVGAVMHITQSSDGSEILKKKPSVGQSKENEEKTNKSNS 257

Query: 98  NKIMIMAMNGNFQGVNNSLLFNSSFTQGDAGLHFMIS 129
           N      MN NFQGVNNS+L+NSS +  D GLH   S
Sbjct: 258 NFPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAYS 294

BLAST of Cp4.1LG08g00690 vs. NCBI nr
Match: gi|449432016|ref|XP_004133796.1| (PREDICTED: leucine-rich repeat extensin-like protein 5 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 3.2e-08
Identity = 43/104 (41.35%), Postives = 57/104 (54.81%), Query Frame = 1

Query: 41  KSNHHQL-SKAMNIRGESVGVVMRINESCEGMEIVKNM---------KKKKGSEGNYYDG 100
           K  H QL S  +NI+GE+VG VM I +S +G E++K           ++K     + Y G
Sbjct: 201 KQQHQQLQSDVINIKGENVGAVMHITQSSDGSEVIKKKPTVGQSKENEEKTNKSNSNYPG 260

Query: 101 KNKIMIMAMNGNFQGVNNSLLFNSSFTQGDAGLHFMI----SKH 131
           K+      MN NFQGVNNS+L+NSS +  D GLH       SKH
Sbjct: 261 KS-----FMNSNFQGVNNSILYNSSLSHRDPGLHLAFGSKKSKH 299

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L5T3_CUCSA2.2e-0841.35Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119290 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659074888|ref|XP_008437849.1|3.2e-0842.27PREDICTED: microtubule-associated protein RP/EB family member 1-like [Cucumis me... [more]
gi|449432016|ref|XP_004133796.1|3.2e-0841.35PREDICTED: leucine-rich repeat extensin-like protein 5 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g00690.1Cp4.1LG08g00690.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g00690Cla021126Watermelon (97103) v1cpewmB845
Cp4.1LG08g00690Lsi05G021570Bottle gourd (USVL1VR-Ls)cpelsiB714
Cp4.1LG08g00690MELO3C005996.2Melon (DHL92) v3.6.1cpemedB951
Cp4.1LG08g00690CsaV3_3G007800Cucumber (Chinese Long) v3cpecucB1058
Cp4.1LG08g00690Bhi01G000385Wax gourdcpewgoB1105
The following gene(s) are paralogous to this gene:

None