CmaCh04G023940 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G023940
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Calcium-binding family protein
Location	Cma_Chr04 : 16583425 .. 16584593 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCCTATTATTAACATCAACGACTTGCTCCGGATCTTCAACAAGCTCGACAAGAACCGCGATGGCCTCATTTGTCTACACGAGCTCAGCTGGCTCCTCGACACGATCGGCGTCGAGCTAACCATGGAGGACTTGCACTCATTTCTAGAGAAACCAAGCCTCGACTTCAACGAGTTCTTGTTCTTTTATGAATCGATATCAAAGCAAAACAAAGGCGAGTGCAAGGGAGGTGTGAGCGATGTCAACGCAAGAGAGGATGATGTCGACATTGTATATATGGCGTTTAAAGTGTTCGATATGAACGATGATGGCTTCATTTCTTGCGAGGAGCTCCAACATGTGTTGTCAAGACTAGAGATTTGGGATGTAAACAGAAGTGGTATTGATTGTAAAAGTATGATCCGAGCTTATGATACCAATTTGGATGGGATGCTCGATTTCGAGGAGTTTAAGAACATGATGTCGTTGACAAGTTCTTGATTCACTTTTAGCTCGTAATGTTGCTTTGTTTGAGAAGCGGTGTGTTTCGTGTCCAAGTTATTTCATAAGAAATTTTTTTCCTTCTGTCACATGTGGATGAACACGGTTGAAATTTATAGTGCAATTTCCACCTACTTGATTCATTGAGTAGTTCTTCTCTCAATGATAACGTCCCACCGTTATAAGTAATGACTAACGTAATCAATTTTAAAGTATAATTTGATACGAAATTACTAATTATTTGATTATGGAATTAATTTAACTTAATCAAACTCATTGGGATTGTTGTTTAGTGTGTAATTTTAGAGAAATTTGAGTTTGAATTTAGAGTTGAGAGTTTGGAAATGGTGGTGTTGGTTTAAAATGAGGATAAGAAAACCGTAAGCTCCACGCTCGCGCCACACGATTCTTCTTCTTCTTCTTCGGTCAATGCCGCAGTCGTCGCCGTCTCCCTTCTCCTCGCTGTCAGTTTGTGCGCCGTCGCTCCCAGCCGCCCTTCGAGCAGCAACTATCGCGTCATCCACCTCGTTTGCTACCTTCCAGATCTGACCAATACGATTCTCTCTTGCATTTCCGGCGAGGTATTGTTCCGACAAAACAATATCCACGACGTTTGGACCTTTGATCTACGGATTGGAGCCTATTCGAGGTCGAACAACACTATTTCGCGAGGATTTCTTGGGTAA

mRNA sequence

ATGTCTCCTATTATTAACATCAACGACTTGCTCCGGATCTTCAACAAGCTCGACAAGAACCGCGATGGCCTCATTTGTCTACACGAGCTCAGCTGGCTCCTCGACACGATCGGCGTCGAGCTAACCATGGAGGACTTGCACTCATTTCTAGAGAAACCAAGCCTCGACTTCAACGAGTTCTTGTTCTTTTATGAATCGATATCAAAGCAAAACAAAGGCGAGTGCAAGGGAGGTGTGAGCGATGTCAACGCAAGAGAGGATGATGTCGACATTGTATATATGGCGTTTAAAGTGTTCGATATGAACGATGATGGCTTCATTTCTTGCGAGGAGCTCCAACATGTGTTGTCAAGACTAGAGATTTGGGATGTAAACAGAAGTGGTATTGATTGTAAAAGTATGATCCGAGCTTATGATACCAATTTGGATGGGATGCTCGATTTCGAGGAGTTTAAGAACATGATGTCGTTGACAATCGTCGCCGTCTCCCTTCTCCTCGCTGTCAGTTTGTGCGCCGTCGCTCCCAGCCGCCCTTCGAGCAGCAACTATCGCGTCATCCACCTCGTTTGCTACCTTCCAGATCTGACCAATACGATTCTCTCTTGCATTTCCGGCGAGGTATTGTTCCGACAAAACAATATCCACGACGTTTGGACCTTTGATCTACGGATTGGAGCCTATTCGAGGTCGAACAACACTATTTCGCGAGGATTTCTTGGGTAA

Coding sequence (CDS)

ATGTCTCCTATTATTAACATCAACGACTTGCTCCGGATCTTCAACAAGCTCGACAAGAACCGCGATGGCCTCATTTGTCTACACGAGCTCAGCTGGCTCCTCGACACGATCGGCGTCGAGCTAACCATGGAGGACTTGCACTCATTTCTAGAGAAACCAAGCCTCGACTTCAACGAGTTCTTGTTCTTTTATGAATCGATATCAAAGCAAAACAAAGGCGAGTGCAAGGGAGGTGTGAGCGATGTCAACGCAAGAGAGGATGATGTCGACATTGTATATATGGCGTTTAAAGTGTTCGATATGAACGATGATGGCTTCATTTCTTGCGAGGAGCTCCAACATGTGTTGTCAAGACTAGAGATTTGGGATGTAAACAGAAGTGGTATTGATTGTAAAAGTATGATCCGAGCTTATGATACCAATTTGGATGGGATGCTCGATTTCGAGGAGTTTAAGAACATGATGTCGTTGACAATCGTCGCCGTCTCCCTTCTCCTCGCTGTCAGTTTGTGCGCCGTCGCTCCCAGCCGCCCTTCGAGCAGCAACTATCGCGTCATCCACCTCGTTTGCTACCTTCCAGATCTGACCAATACGATTCTCTCTTGCATTTCCGGCGAGGTATTGTTCCGACAAAACAATATCCACGACGTTTGGACCTTTGATCTACGGATTGGAGCCTATTCGAGGTCGAACAACACTATTTCGCGAGGATTTCTTGGGTAA

Protein sequence

MSPIININDLLRIFNKLDKNRDGLICLHELSWLLDTIGVELTMEDLHSFLEKPSLDFNEFLFFYESISKQNKGECKGGVSDVNAREDDVDIVYMAFKVFDMNDDGFISCEELQHVLSRLEIWDVNRSGIDCKSMIRAYDTNLDGMLDFEEFKNMMSLTIVAVSLLLAVSLCAVAPSRPSSSNYRVIHLVCYLPDLTNTILSCISGEVLFRQNNIHDVWTFDLRIGAYSRSNNTISRGFLG

Homology

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BLAST of CmaCh04G023940 vs. Swiss-Prot
Match: CML44_ARATH (Probable calcium-binding protein CML44 OS=Arabidopsis thaliana GN=CML44 PE=2 SV=2)

HSP 1 Score: 127.5 bits (319), Expect = 2.0e-28
Identity = 70/153 (45.75%), Postives = 98/153 (64.05%), Query Frame = 1


Query: 5   ININDLLRIFNKLDKNRDGLICLHELSWLLDTIG-VELTMEDLHSFLEKPSLDFNEFL-F 64
           I  NDL R+F  LDKN+DGL+ L EL W+LD +G  E T ++L   + K SLD +EFL F
Sbjct: 6   ITTNDLRRMFKTLDKNQDGLVTLDELLWILDKLGWAEHTPDELELIVGKQSLDLDEFLRF 65

Query: 65  FYESISKQNKGECKGGVSDVNAREDDVDIVYMAFKVFDMNDDGFISCEELQHVLSRLEIW 124
           +Y+++      + KG   +++   D+ + +  AF VFD+N DG+IS EEL+ VL RL  +
Sbjct: 66  YYDAVL-----DSKGSKKNIDVVADNDEAIARAFNVFDVNGDGYISAEELRDVLERLG-F 125

Query: 125 DVNRSGIDCKSMIRAYDTNLDGMLDFEEFKNMM 156
           +      DC  MIR +D NLDG +DFEEFKNM+
Sbjct: 126 EEEAKAWDCGRMIRVHDKNLDGFVDFEEFKNMI 152

[Close]

BLAST of CmaCh04G023940 vs. Swiss-Prot
Match: CML43_ARATH (Probable calcium-binding protein CML43 OS=Arabidopsis thaliana GN=CML43 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.5e-17
Identity = 59/168 (35.12%), Postives = 87/168 (51.79%), Query Frame = 1


Query: 2   SPIININDLLRIFNKLDKNRDGLICLHELSWLLDTIGVELTMEDLHSFL------EKPSL 61
           SP +N   L R+F+  DKN DG I + ELS  L  +G++    DL S +      +K  L
Sbjct: 21  SPSLNALRLHRVFDLFDKNNDGFITVEELSQALSRLGLDADFSDLKSTVDSFIKPDKTGL 80

Query: 62  DFNEFLFFYESISKQ---NKGECKGGVSDVNAREDDVDIVYMAFKVFDMNDDGFISCEEL 121
            F++F   ++++ +     +G C  G  + +  E        AF VFD + DGFIS  EL
Sbjct: 81  RFDDFAALHKTLDESFFGGEGSCCDGSPESDLEE--------AFNVFDEDGDGFISAVEL 140

Query: 122 QHVLSRLEIWDVNRSGIDCKSMIRAYDTNLDGMLDFEEFKNMMSLTIV 161
           Q VL +L + +        + MI + D+N DG +DF EFKNMM   +V
Sbjct: 141 QKVLKKLGLPEAGEIE-QVEKMIVSVDSNHDGRVDFFEFKNMMQTVVV 179

[Close]

BLAST of CmaCh04G023940 vs. Swiss-Prot
Match: CML3_ARATH (Calmodulin-like protein 3 OS=Arabidopsis thaliana GN=CML3 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.9e-15
Identity = 56/153 (36.60%), Postives = 81/153 (52.94%), Query Frame = 1


Query: 9   DLLRIFNKLDKNRDGLICLHELSWLLDTIGVELTMEDLHSFLEKPSL------DFNEFLF 68
           +L RIF   D+N DG I   EL+  L+ +G+ +  +DL   +EK  L      D  EF  
Sbjct: 5   ELARIFQMFDRNGDGKITKQELNDSLENLGIYIPDKDLVQMIEKIDLNGDGYVDIEEFGG 64

Query: 69  FYESISKQNKGECKGGVSDVNAREDDVDIVYMAFKVFDMNDDGFISCEELQHVLSRLEIW 128
            Y++I ++                D+ + +  AF VFD N DGFI+ EEL+ VL+ L + 
Sbjct: 65  LYQTIMEER---------------DEEEDMREAFNVFDQNRDGFITVEELRSVLASLGL- 124

Query: 129 DVNRSGIDCKSMIRAYDTNLDGMLDFEEFKNMM 156
              R+  DCK MI   D + DGM++F+EFK MM
Sbjct: 125 KQGRTLEDCKRMISKVDVDGDGMVNFKEFKQMM 141

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BLAST of CmaCh04G023940 vs. Swiss-Prot
Match: ALLB3_BETPN (Calcium-binding allergen Bet v 3 OS=Betula pendula GN=BETVIII PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.2e-14
Identity = 62/178 (34.83%), Postives = 93/178 (52.25%), Query Frame = 1


Query: 2   SPIININDLLRIFNKLDKNRDGLICLHELSWLLDTIGVELTMEDLHSFLE------KPSL 61
           S  +N   L RIF+  DKN DG+I + ELS  L+ +G+E  + +L S ++         L
Sbjct: 33  SESLNTLRLRRIFDLFDKNSDGIITVDELSRALNLLGLETDLSELESTVKSFTREGNIGL 92

Query: 62  DFNEFLFFYESISKQNKGECKGGVSDVNAREDDVDIVYMA---------FKVFDMNDDGF 121
            F +F+  ++S+   N      G  D +  E+D+    ++         FKVFD + DG+
Sbjct: 93  QFEDFISLHQSL---NDSYFAYGGEDEDDNEEDMRKSILSQEEADSFGGFKVFDEDGDGY 152

Query: 122 ISCEELQHVLSRLEIWDVNRSGID-CKSMIRAYDTNLDGMLDFEEFKNMMSLTIVAVS 164
           IS  ELQ VL +L   +   S ID  + MI + D+N DG +DF EFK+MM   +V  S
Sbjct: 153 ISARELQMVLGKLGFSE--GSEIDRVEKMIVSVDSNRDGRVDFFEFKDMMRSVLVRSS 205

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BLAST of CmaCh04G023940 vs. Swiss-Prot
Match: CAST_SOLTU (Calcium-binding protein CAST OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.1e-14
Identity = 62/169 (36.69%), Postives = 94/169 (55.62%), Query Frame = 1


Query: 2   SPIININDLLRIFNKLDKNRDGLICLHELSWLLDTIGVELTMEDLHSFL------EKPSL 61
           SP +N   L RIF+  D+N D LI + ELS  L+ +G++  + ++ S +      E   L
Sbjct: 33  SPSLNSIRLRRIFDVFDRNHDCLISVEELSQALNLLGLDADLSEIESMVKLHIKPENTGL 92

Query: 62  DFNEFLFFYESISK---QNKGECKGGVSDVNAREDDVDIVYMAFKVFDMNDDGFISCEEL 121
            F +F   + S++     +K E K G++  +  +D+ D+   AF VFD N DGFIS +EL
Sbjct: 93  RFEDFETLHRSLNDVFFGSKCEDKLGLNP-DPAQDESDL-KEAFDVFDENGDGFISAKEL 152

Query: 122 QHVLSRLEIWDVNRSGID-CKSMIRAYDTNLDGMLDFEEFKNMMSLTIV 161
           Q VL +L +     S ID  + MI + + + DG +DF EFK+MM   IV
Sbjct: 153 QVVLEKLGL--PEGSEIDRVEMMISSVEQDHDGRVDFFEFKDMMRTVIV 197

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BLAST of CmaCh04G023940 vs. TrEMBL
Match: A0A0A0KFQ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G376250 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.2e-59
Identity = 117/163 (71.78%), Postives = 139/163 (85.28%), Query Frame = 1


Query: 3   PIININDLLRIFNKLDKNRDGLICLHELSWLLDTIGVELTMEDLHSFLEKPSLDFNEFLF 62
           P I+  DL RIF KLDKN DGLICL EL+WLLD+IG++LTME+L SFLE+PSLDF+EFLF
Sbjct: 2   PPISSKDLHRIFKKLDKNCDGLICLQELNWLLDSIGIQLTMEELESFLERPSLDFDEFLF 61

Query: 63  FYESISKQNKGECKGGV------SDVNAREDDVDIVYMAFKVFDMNDDGFISCEELQHVL 122
           FYESISKQNKGECKGGV      +D +  +DD++IVY+AFKVFDMN DGFISC+EL++VL
Sbjct: 62  FYESISKQNKGECKGGVAGCVQDNDNDQGQDDMEIVYLAFKVFDMNGDGFISCDELENVL 121

Query: 123 SRLEIWDVNRSGID-CKSMIRAYDTNLDGMLDFEEFKNMMSLT 159
            +LE+WD +RS +D C+SMIRAYDTNLDG LDFEEFKNMM LT
Sbjct: 122 VKLELWDASRSDVDYCRSMIRAYDTNLDGKLDFEEFKNMMLLT 164

[Close]

BLAST of CmaCh04G023940 vs. TrEMBL
Match: A0A061FHR5_THECC (Calcium-binding EF-hand family protein OS=Theobroma cacao GN=TCM_035222 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.9e-42
Identity = 98/164 (59.76%), Postives = 115/164 (70.12%), Query Frame = 1


Query: 1   MSPIININDLLRIFNKLDKNRDGLICLHELSWLLDTIGVELTMEDLHSFLEKPSLDFNEF 60
           MSP+   NDL RIF KLDKN DGL+ L EL+WLL  IGV+ ++E+L SF+ KP LDFNEF
Sbjct: 29  MSPLSK-NDLQRIFEKLDKNGDGLVSLEELNWLLVRIGVQFSLEELGSFVGKPCLDFNEF 88

Query: 61  LFFYESISKQNKG-----ECKGGVSDVNAREDDVDIVYMAFKVFDMNDDGFISCEELQHV 120
           LFFY+SIS QN           G  D   + D+   +  AFKVFD+N DGFISCEELQ V
Sbjct: 89  LFFYDSISNQNDDGKNMEPAGSGEEDGLIQADEDSDLVKAFKVFDLNGDGFISCEELQSV 148

Query: 121 LSRLEIWDVNRSGIDCKSMIRAYDTNLDGMLDFEEFKNMMSLTI 160
           L RL +WD   SG DC++MI  YDTNLDGM+DFEEFKNMM  TI
Sbjct: 149 LVRLGLWD-ESSGKDCRNMICFYDTNLDGMVDFEEFKNMMLHTI 190

[Close]

BLAST of CmaCh04G023940 vs. TrEMBL
Match: A0A059C245_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00990 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 9.2e-41
Identity = 95/162 (58.64%), Postives = 116/162 (71.60%), Query Frame = 1


Query: 1   MSPIININDLLRIFNKLDKNRDGLICLHELSWLLDTIGVELTMEDLHSFLEKPSLDFNEF 60
           MSP+    DL RIF  LDKN DG + L EL+WLL+ IG+  ++ +L   + KPSLDF+EF
Sbjct: 1   MSPL-GTGDLRRIFENLDKNGDGQVSLEELNWLLEKIGIHHSLGELELSIGKPSLDFDEF 60

Query: 61  LFFYESISKQNKGECKGGVSDVNAREDDVD---IVYMAFKVFDMNDDGFISCEELQHVLS 120
           LFFY+SIS +      GGV    +   DV+    +  AFKVFD+NDDGFISC+ELQ VLS
Sbjct: 61  LFFYDSISSEETMR-SGGVESRESSGGDVNQETDLAEAFKVFDLNDDGFISCDELQSVLS 120

Query: 121 RLEIWDVNRSGIDCKSMIRAYDTNLDGMLDFEEFKNMMSLTI 160
           +LE+WD  RSG DC SMIRAYDTN DG LDFEEFK+MMS+TI
Sbjct: 121 KLELWD-ERSGRDCNSMIRAYDTNNDGKLDFEEFKSMMSITI 159

[Close]

BLAST of CmaCh04G023940 vs. TrEMBL
Match: F6H0H4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g01630 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.1e-40
Identity = 85/154 (55.19%), Postives = 116/154 (75.32%), Query Frame = 1


Query: 9   DLLRIFNKLDKNRDGLICLHELSWLLDTIGVELTMEDLHSFLEKPSLDFNEFLFFYESIS 68
           DL RIF+KLD+N DGL+ L EL+WLL+ +GV+ ++++L S +   +LDFNEFL FYESIS
Sbjct: 10  DLHRIFHKLDRNGDGLVSLGELNWLLERVGVQYSLDELESLVGNTTLDFNEFLVFYESIS 69

Query: 69  KQNKGECKGGVSDVNAREDDVDI--VYMAFKVFDMNDDGFISCEELQHVLSRLEIWDVNR 128
            + KGE +    +V   E++ D+  +  AF+VFD+N DGFI+C+ELQ VLSRL +W+ N 
Sbjct: 70  TEKKGESEVEEEEVKEEEEEEDVGDLAKAFRVFDLNGDGFITCDELQSVLSRLGMWEENG 129

Query: 129 SGIDCKSMIRAYDTNLDGMLDFEEFKNMMSLTIV 161
            G DC+SMI+ YDTN DG+LDFEEFKNMM L+ +
Sbjct: 130 GG-DCRSMIKVYDTNSDGVLDFEEFKNMMLLSTI 162

[Close]

BLAST of CmaCh04G023940 vs. TrEMBL
Match: V4TCZ3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002706mg PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 6.0e-40
Identity = 94/158 (59.49%), Postives = 115/158 (72.78%), Query Frame = 1


Query: 9   DLLRIFNKLDKNRDGLICLHELSWLLDTIGVELTMEDLHSFLEKPSLDFNEFLFFYESIS 68
           DL RIF +LDKN D  + L EL+WLL+ IGV L++E+L SF+ K SLD NEFLFF++SIS
Sbjct: 8   DLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFVGKSSLDLNEFLFFWKSIS 67

Query: 69  KQNKG-----ECKGGVS-DVNAREDDVDI--VYMAFKVFDMNDDGFISCEELQHVLSRLE 128
           KQN       E K  ++ D N  +DD +I  +  AF VFD+N DGFISCEELQ+VLSRL 
Sbjct: 68  KQNNNKVDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRLG 127

Query: 129 IWDVNRSGIDCKSMIRAYDTNLDGMLDFEEFKNMMSLT 159
           +WD  +SG DC  MI  YDTNLDG+LDFEEFKNMM L+
Sbjct: 128 LWD-EKSGKDCTRMICMYDTNLDGVLDFEEFKNMMLLS 164

[Close]

BLAST of CmaCh04G023940 vs. TAIR10
Match: AT1G21550.1 (AT1G21550.1 Calcium-binding EF-hand family protein)

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-29
Identity = 70/153 (45.75%), Postives = 98/153 (64.05%), Query Frame = 1


Query: 5   ININDLLRIFNKLDKNRDGLICLHELSWLLDTIG-VELTMEDLHSFLEKPSLDFNEFL-F 64
           I  NDL R+F  LDKN+DGL+ L EL W+LD +G  E T ++L   + K SLD +EFL F
Sbjct: 6   ITTNDLRRMFKTLDKNQDGLVTLDELLWILDKLGWAEHTPDELELIVGKQSLDLDEFLRF 65

Query: 65  FYESISKQNKGECKGGVSDVNAREDDVDIVYMAFKVFDMNDDGFISCEELQHVLSRLEIW 124
           +Y+++      + KG   +++   D+ + +  AF VFD+N DG+IS EEL+ VL RL  +
Sbjct: 66  YYDAVL-----DSKGSKKNIDVVADNDEAIARAFNVFDVNGDGYISAEELRDVLERLG-F 125

Query: 125 DVNRSGIDCKSMIRAYDTNLDGMLDFEEFKNMM 156
           +      DC  MIR +D NLDG +DFEEFKNM+
Sbjct: 126 EEEAKAWDCGRMIRVHDKNLDGFVDFEEFKNMI 152

[Close]

BLAST of CmaCh04G023940 vs. TAIR10
Match: AT4G20780.1 (AT4G20780.1 calmodulin like 42)

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-19
Identity = 65/172 (37.79%), Postives = 93/172 (54.07%), Query Frame = 1


Query: 2   SPIININDLLRIFNKLDKNRDGLICLHELSWLLDTIGVELTMEDLHSFLEK------PSL 61
           SP +N   L RIF+  DKN DG I + ELS  L  +G+   + DL S +E         L
Sbjct: 22  SPSLNALRLQRIFDLFDKNGDGFITVEELSQALTRLGLNADLSDLKSTVESYIQPGNTGL 81

Query: 62  DFNEFLFFYESISKQN-KGECKGGVSD---VNAREDDVDIVYMAFKVFDMNDDGFISCEE 121
           +F++F   ++++      G C GG ++    +A E++ D+   AFKVFD N DGFIS  E
Sbjct: 82  NFDDFSSLHKTLDDSFFGGACGGGENEDDPSSAAENESDLAE-AFKVFDENGDGFISARE 141

Query: 122 LQHVLSRLEIWDVNRSGIDCKSMIRAYDTNLDGMLDFEEFKNMMSLTIVAVS 164
           LQ VL +L + +        + MI + D N DG +DF EFKNMM   ++  S
Sbjct: 142 LQTVLKKLGLPEGGEME-RVEKMIVSVDRNQDGRVDFFEFKNMMRTVVIPSS 191

[Close]

BLAST of CmaCh04G023940 vs. TAIR10
Match: AT5G44460.1 (AT5G44460.1 calmodulin like 43)

HSP 1 Score: 90.1 bits (222), Expect = 2.0e-18
Identity = 59/168 (35.12%), Postives = 87/168 (51.79%), Query Frame = 1


Query: 2   SPIININDLLRIFNKLDKNRDGLICLHELSWLLDTIGVELTMEDLHSFL------EKPSL 61
           SP +N   L R+F+  DKN DG I + ELS  L  +G++    DL S +      +K  L
Sbjct: 21  SPSLNALRLHRVFDLFDKNNDGFITVEELSQALSRLGLDADFSDLKSTVDSFIKPDKTGL 80

Query: 62  DFNEFLFFYESISKQ---NKGECKGGVSDVNAREDDVDIVYMAFKVFDMNDDGFISCEEL 121
            F++F   ++++ +     +G C  G  + +  E        AF VFD + DGFIS  EL
Sbjct: 81  RFDDFAALHKTLDESFFGGEGSCCDGSPESDLEE--------AFNVFDEDGDGFISAVEL 140

Query: 122 QHVLSRLEIWDVNRSGIDCKSMIRAYDTNLDGMLDFEEFKNMMSLTIV 161
           Q VL +L + +        + MI + D+N DG +DF EFKNMM   +V
Sbjct: 141 QKVLKKLGLPEAGEIE-QVEKMIVSVDSNHDGRVDFFEFKNMMQTVVV 179

[Close]

BLAST of CmaCh04G023940 vs. TAIR10
Match: AT3G07490.1 (AT3G07490.1 ARF-GAP domain 11)

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-16
Identity = 56/153 (36.60%), Postives = 81/153 (52.94%), Query Frame = 1


Query: 9   DLLRIFNKLDKNRDGLICLHELSWLLDTIGVELTMEDLHSFLEKPSL------DFNEFLF 68
           +L RIF   D+N DG I   EL+  L+ +G+ +  +DL   +EK  L      D  EF  
Sbjct: 5   ELARIFQMFDRNGDGKITKQELNDSLENLGIYIPDKDLVQMIEKIDLNGDGYVDIEEFGG 64

Query: 69  FYESISKQNKGECKGGVSDVNAREDDVDIVYMAFKVFDMNDDGFISCEELQHVLSRLEIW 128
            Y++I ++                D+ + +  AF VFD N DGFI+ EEL+ VL+ L + 
Sbjct: 65  LYQTIMEER---------------DEEEDMREAFNVFDQNRDGFITVEELRSVLASLGL- 124

Query: 129 DVNRSGIDCKSMIRAYDTNLDGMLDFEEFKNMM 156
              R+  DCK MI   D + DGM++F+EFK MM
Sbjct: 125 KQGRTLEDCKRMISKVDVDGDGMVNFKEFKQMM 141

[Close]

BLAST of CmaCh04G023940 vs. TAIR10
Match: AT4G12860.1 (AT4G12860.1 EF hand calcium-binding protein family)

HSP 1 Score: 80.1 bits (196), Expect = 2.0e-15
Identity = 51/153 (33.33%), Postives = 82/153 (53.59%), Query Frame = 1


Query: 9   DLLRIFNKLDKNRDGLICLHELSWLLDTIGVELTMEDLHSFLEKP------SLDFNEFLF 68
           +L R+F   DKN DG I  +EL     ++G+ +   +++  + K       ++D +EF  
Sbjct: 5   ELSRVFQMFDKNGDGKIAKNELKDFFKSVGIMVPENEINEMIAKMDVNGDGAMDIDEFGS 64

Query: 69  FYESISKQNKGECKGGVSDVNAREDDVDIVYMAFKVFDMNDDGFISCEELQHVLSRLEIW 128
            Y+ +              V  +E++ D+   AF+VFD N DGFI+ EEL+ VL+ + + 
Sbjct: 65  LYQEM--------------VEEKEEEEDM-REAFRVFDQNGDGFITDEELRSVLASMGLK 124

Query: 129 DVNRSGIDCKSMIRAYDTNLDGMLDFEEFKNMM 156
              R+  DCK MI   D + DGM++F+EFK MM
Sbjct: 125 Q-GRTLEDCKKMISKVDVDGDGMVNFKEFKQMM 141

[Close]

BLAST of CmaCh04G023940 vs. NCBI nr
Match: gi|659081990|ref|XP_008441608.1| (PREDICTED: probable calcium-binding protein CML44 [Cucumis melo])

HSP 1 Score: 238.8 bits (608), Expect = 9.8e-60
Identity = 120/161 (74.53%), Postives = 137/161 (85.09%), Query Frame = 1


Query: 1   MSPIININDLLRIFNKLDKNRDGLICLHELSWLLDTIGVELTMEDLHSFLEKPSLDFNEF 60
           MSPI +  DL RIF KLDKN DGL+CL EL WLLD IG++LTME+L SFLEKPSLDF+EF
Sbjct: 1   MSPISS-KDLHRIFKKLDKNCDGLLCLQELKWLLDRIGIQLTMEELESFLEKPSLDFDEF 60

Query: 61  LFFYESISKQNKGECKGGVSDV--NAREDDVDIVYMAFKVFDMNDDGFISCEELQHVLSR 120
           LFFYESISKQNKGECKGGV+    +  EDD +IVYMAFKVFDMN DGFISC+EL++VL R
Sbjct: 61  LFFYESISKQNKGECKGGVAGCVQDDHEDDTEIVYMAFKVFDMNGDGFISCDELENVLVR 120

Query: 121 LEIWDVNRSGID-CKSMIRAYDTNLDGMLDFEEFKNMMSLT 159
           LE+WD +RS +D C+SMI+AYDTNLDG LDFEEFKNMM LT
Sbjct: 121 LELWDASRSEVDYCRSMIQAYDTNLDGKLDFEEFKNMMLLT 160

[Close]

BLAST of CmaCh04G023940 vs. NCBI nr
Match: gi|449463432|ref|XP_004149438.1| (PREDICTED: probable calcium-binding protein CML44 [Cucumis sativus])

HSP 1 Score: 238.0 bits (606), Expect = 1.7e-59
Identity = 117/163 (71.78%), Postives = 139/163 (85.28%), Query Frame = 1


Query: 3   PIININDLLRIFNKLDKNRDGLICLHELSWLLDTIGVELTMEDLHSFLEKPSLDFNEFLF 62
           P I+  DL RIF KLDKN DGLICL EL+WLLD+IG++LTME+L SFLE+PSLDF+EFLF
Sbjct: 2   PPISSKDLHRIFKKLDKNCDGLICLQELNWLLDSIGIQLTMEELESFLERPSLDFDEFLF 61

Query: 63  FYESISKQNKGECKGGV------SDVNAREDDVDIVYMAFKVFDMNDDGFISCEELQHVL 122
           FYESISKQNKGECKGGV      +D +  +DD++IVY+AFKVFDMN DGFISC+EL++VL
Sbjct: 62  FYESISKQNKGECKGGVAGCVQDNDNDQGQDDMEIVYLAFKVFDMNGDGFISCDELENVL 121

Query: 123 SRLEIWDVNRSGID-CKSMIRAYDTNLDGMLDFEEFKNMMSLT 159
            +LE+WD +RS +D C+SMIRAYDTNLDG LDFEEFKNMM LT
Sbjct: 122 VKLELWDASRSDVDYCRSMIRAYDTNLDGKLDFEEFKNMMLLT 164

[Close]

BLAST of CmaCh04G023940 vs. NCBI nr
Match: gi|590599643|ref|XP_007019238.1| (Calcium-binding EF-hand family protein [Theobroma cacao])

HSP 1 Score: 179.5 bits (454), Expect = 7.0e-42
Identity = 98/164 (59.76%), Postives = 115/164 (70.12%), Query Frame = 1


Query: 1   MSPIININDLLRIFNKLDKNRDGLICLHELSWLLDTIGVELTMEDLHSFLEKPSLDFNEF 60
           MSP+   NDL RIF KLDKN DGL+ L EL+WLL  IGV+ ++E+L SF+ KP LDFNEF
Sbjct: 29  MSPLSK-NDLQRIFEKLDKNGDGLVSLEELNWLLVRIGVQFSLEELGSFVGKPCLDFNEF 88

Query: 61  LFFYESISKQNKG-----ECKGGVSDVNAREDDVDIVYMAFKVFDMNDDGFISCEELQHV 120
           LFFY+SIS QN           G  D   + D+   +  AFKVFD+N DGFISCEELQ V
Sbjct: 89  LFFYDSISNQNDDGKNMEPAGSGEEDGLIQADEDSDLVKAFKVFDLNGDGFISCEELQSV 148

Query: 121 LSRLEIWDVNRSGIDCKSMIRAYDTNLDGMLDFEEFKNMMSLTI 160
           L RL +WD   SG DC++MI  YDTNLDGM+DFEEFKNMM  TI
Sbjct: 149 LVRLGLWD-ESSGKDCRNMICFYDTNLDGMVDFEEFKNMMLHTI 190

[Close]

BLAST of CmaCh04G023940 vs. NCBI nr
Match: gi|702338819|ref|XP_010055938.1| (PREDICTED: probable calcium-binding protein CML44 [Eucalyptus grandis])

HSP 1 Score: 175.3 bits (443), Expect = 1.3e-40
Identity = 95/162 (58.64%), Postives = 116/162 (71.60%), Query Frame = 1


Query: 1   MSPIININDLLRIFNKLDKNRDGLICLHELSWLLDTIGVELTMEDLHSFLEKPSLDFNEF 60
           MSP+    DL RIF  LDKN DG + L EL+WLL+ IG+  ++ +L   + KPSLDF+EF
Sbjct: 1   MSPL-GTGDLRRIFENLDKNGDGQVSLEELNWLLEKIGIHHSLGELELSIGKPSLDFDEF 60

Query: 61  LFFYESISKQNKGECKGGVSDVNAREDDVD---IVYMAFKVFDMNDDGFISCEELQHVLS 120
           LFFY+SIS +      GGV    +   DV+    +  AFKVFD+NDDGFISC+ELQ VLS
Sbjct: 61  LFFYDSISSEETMR-SGGVESRESSGGDVNQETDLAEAFKVFDLNDDGFISCDELQSVLS 120

Query: 121 RLEIWDVNRSGIDCKSMIRAYDTNLDGMLDFEEFKNMMSLTI 160
           +LE+WD  RSG DC SMIRAYDTN DG LDFEEFK+MMS+TI
Sbjct: 121 KLELWD-ERSGRDCNSMIRAYDTNNDGKLDFEEFKSMMSITI 159

[Close]

BLAST of CmaCh04G023940 vs. NCBI nr
Match: gi|568837720|ref|XP_006472871.1| (PREDICTED: probable calcium-binding protein CML44 [Citrus sinensis])

HSP 1 Score: 175.3 bits (443), Expect = 1.3e-40
Identity = 95/158 (60.13%), Postives = 116/158 (73.42%), Query Frame = 1


Query: 9   DLLRIFNKLDKNRDGLICLHELSWLLDTIGVELTMEDLHSFLEKPSLDFNEFLFFYESIS 68
           DL RIF +LDKN D  + L EL+WLL+ IGV L++E+L SF+ K SLD NEFLFF++SIS
Sbjct: 8   DLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFVGKSSLDLNEFLFFWKSIS 67

Query: 69  KQNKG-----ECKGGVS-DVNAREDDVDI--VYMAFKVFDMNDDGFISCEELQHVLSRLE 128
           KQN       E KG ++ D N  +DD +I  +  AF VFD+N DGFISCEELQ+VLSRL 
Sbjct: 68  KQNNNKVDDHEVKGEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRLG 127

Query: 129 IWDVNRSGIDCKSMIRAYDTNLDGMLDFEEFKNMMSLT 159
           +WD  +SG DC  MI  YDTNLDG+LDFEEFKNMM L+
Sbjct: 128 LWD-EKSGKDCTRMICMYDTNLDGVLDFEEFKNMMLLS 164

The following BLAST results are available for this feature:

BLAST of CmaCh04G023940 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CML44_ARATH	2.0e-28	45.75	Probable calcium-binding protein CML44 OS=Arabidopsis thaliana GN=CML44 PE=2 SV=...	[more]
CML43_ARATH	3.5e-17	35.12	Probable calcium-binding protein CML43 OS=Arabidopsis thaliana GN=CML43 PE=2 SV=...	[more]
CML3_ARATH	1.9e-15	36.60	Calmodulin-like protein 3 OS=Arabidopsis thaliana GN=CML3 PE=2 SV=1	[more]
ALLB3_BETPN	1.2e-14	34.83	Calcium-binding allergen Bet v 3 OS=Betula pendula GN=BETVIII PE=1 SV=1	[more]
CAST_SOLTU	2.1e-14	36.69	Calcium-binding protein CAST OS=Solanum tuberosum PE=2 SV=1	[more]

BLAST of CmaCh04G023940 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFQ6_CUCSA	1.2e-59	71.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G376250 PE=4 SV=1	[more]
A0A061FHR5_THECC	4.9e-42	59.76	Calcium-binding EF-hand family protein OS=Theobroma cacao GN=TCM_035222 PE=4 SV=...	[more]
A0A059C245_EUCGR	9.2e-41	58.64	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00990 PE=4 SV=1	[more]
F6H0H4_VITVI	2.1e-40	55.19	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g01630 PE=4 SV=...	[more]
V4TCZ3_9ROSI	6.0e-40	59.49	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002706mg PE=4 SV=1	[more]

BLAST of CmaCh04G023940 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G21550.1	1.1e-29	45.75	Calcium-binding EF-hand family protein	[more]
AT4G20780.1	1.4e-19	37.79	calmodulin like 42	[more]
AT5G44460.1	2.0e-18	35.12	calmodulin like 43	[more]
AT3G07490.1	1.1e-16	36.60	ARF-GAP domain 11	[more]
AT4G12860.1	2.0e-15	33.33	EF hand calcium-binding protein family	[more]

BLAST of CmaCh04G023940 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081990\|ref\|XP_008441608.1\|	9.8e-60	74.53	PREDICTED: probable calcium-binding protein CML44 [Cucumis melo]	[more]
gi\|449463432\|ref\|XP_004149438.1\|	1.7e-59	71.78	PREDICTED: probable calcium-binding protein CML44 [Cucumis sativus]	[more]
gi\|590599643\|ref\|XP_007019238.1\|	7.0e-42	59.76	Calcium-binding EF-hand family protein [Theobroma cacao]	[more]
gi\|702338819\|ref\|XP_010055938.1\|	1.3e-40	58.64	PREDICTED: probable calcium-binding protein CML44 [Eucalyptus grandis]	[more]
gi\|568837720\|ref\|XP_006472871.1\|	1.3e-40	60.13	PREDICTED: probable calcium-binding protein CML44 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002048	EF_hand_dom
IPR011992	EF-hand-dom_pair
IPR018247	EF_Hand_1_Ca_BS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G023940.1	CmaCh04G023940.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	PFAM	PF13202	EF-hand_5	coord: 13..30 score: 6.
IPR002048	EF-hand domain	PFAM	PF13499	EF-hand_7	coord: 93..155 score: 3.
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 9..37 score: 0.016coord: 130..158 score: 3.9E-4coord: 91..119 score: 0
IPR002048	EF-hand domain	PROFILE	PS50222	EF_HAND_2	coord: 5..40 score: 11.78coord: 87..122 score: 11.835coord: 126..161 score: 12
IPR011992	EF-hand domain pair	GENE3D	G3DSA:1.10.238.10		coord: 99..156 score: 1.3E-15coord: 55..98 score: 9.0E-5coord: 8..42 score: 2.
IPR011992	EF-hand domain pair	unknown	SSF47473	EF-hand	coord: 7..156 score: 9.94
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 100..112 score: -coord: 18..30 scor
None	No IPR available	PANTHER	PTHR10891	EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN	coord: 5..155 score: 4.9
None	No IPR available	PANTHER	PTHR10891:SF530	SUBFAMILY NOT NAMED	coord: 5..155 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G023940	Cucsa.328100	Cucumber (Gy14) v1	cgycmaB0908
CmaCh04G023940	Cla013901	Watermelon (97103) v1	cmawmB666
CmaCh04G023940	Csa6G376250	Cucumber (Chinese Long) v2	cmacuB769
CmaCh04G023940	MELO3C008466	Melon (DHL92) v3.5.1	cmameB680
CmaCh04G023940	ClCG08G006060	Watermelon (Charleston Gray)	cmawcgB678
CmaCh04G023940	CSPI06G19980	Wild cucumber (PI 183967)	cmacpiB779
CmaCh04G023940	CmoCh15G006570	Cucurbita moschata (Rifu)	cmacmoB693
CmaCh04G023940	CmoCh04G025100	Cucurbita moschata (Rifu)	cmacmoB729
CmaCh04G023940	CmoCh09G010550	Cucurbita moschata (Rifu)	cmacmoB675
CmaCh04G023940	Lsi08G004690	Bottle gourd (USVL1VR-Ls)	cmalsiB703
CmaCh04G023940	Cp4.1LG13g04330	Cucurbita pepo (Zucchini)	cmacpeB705
CmaCh04G023940	Cp4.1LG01g20760	Cucurbita pepo (Zucchini)	cmacpeB721
CmaCh04G023940	Cp4.1LG06g08010	Cucurbita pepo (Zucchini)	cmacpeB754
CmaCh04G023940	MELO3C008466.2	Melon (DHL92) v3.6.1	cmamedB763
CmaCh04G023940	CsaV3_6G034010	Cucumber (Chinese Long) v3	cmacucB0908
CmaCh04G023940	Cla97C08G148820	Watermelon (97103) v2	cmawmbB786
CmaCh04G023940	Bhi04G001477	Wax gourd	cmawgoB0869
CmaCh04G023940	CsGy6G019460	Cucumber (Gy14) v2	cgybcmaB837
CmaCh04G023940	Carg01562	Silver-seed gourd	carcmaB1150
CmaCh04G023940	Carg15752	Silver-seed gourd	carcmaB0088

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G023940	CmaCh15G006470	Cucurbita maxima (Rimu)	cmacmaB325

The following block(s) are covering this gene:

None