CmoCh09G010550 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh09G010550
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Calcium-binding family protein
Location	Cmo_Chr09 : 5711426 .. 5711881 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCCATTCAACGCCTCCGATTTACAGAGGATTTTCGAAACGATTGACAGAAATGGCGACGGCTTCGTGAGCATCGAGGAGCTTCATTGGCTTCTTAATCGAACAGGCGTCGATTTCATTTCGGATGATCTCGAATCGTTAATAGGTAAATCGATGATTGATTTTGATGAATTCTTGTCTCTGTATGAATCGATTTCGGAAATAAACAGAGGAGGAGAGGAGATTGAGAGCGATCTTTTGAATGCATTCCAAGTGTTCGACGAAAATCGCGATGGTTTTATTTCGTGCGATGAGCTTCACAATGTGTTGGTTAGGTTAGAGCTTTGGGATGATCGACGCTGTGTGCGTGATTGTAGGCGCATGATTGGCGCGTTCGATGTCGATTTGGATGGGCGGCTTGATTTTGAGGAATTCAAGAACATGATGAACTACTCTTCTAATTCTTCGTTTTAG

mRNA sequence

ATGTCTCCATTCAACGCCTCCGATTTACAGAGGATTTTCGAAACGATTGACAGAAATGGCGACGGCTTCGTGAGCATCGAGGAGCTTCATTGGCTTCTTAATCGAACAGGCGTCGATTTCATTTCGGATGATCTCGAATCGTTAATAGGTAAATCGATGATTGATTTTGATGAATTCTTGTCTCTGTATGAATCGATTTCGGAAATAAACAGAGGAGGAGAGGAGATTGAGAGCGATCTTTTGAATGCATTCCAAGTGTTCGACGAAAATCGCGATGGTTTTATTTCGTGCGATGAGCTTCACAATGTGTTGGTTAGGTTAGAGCTTTGGGATGATCGACGCTGTGTGCGTGATTGTAGGCGCATGATTGGCGCGTTCGATGTCGATTTGGATGGGCGGCTTGATTTTGAGGAATTCAAGAACATGATGAACTACTCTTCTAATTCTTCGTTTTAG

Coding sequence (CDS)

ATGTCTCCATTCAACGCCTCCGATTTACAGAGGATTTTCGAAACGATTGACAGAAATGGCGACGGCTTCGTGAGCATCGAGGAGCTTCATTGGCTTCTTAATCGAACAGGCGTCGATTTCATTTCGGATGATCTCGAATCGTTAATAGGTAAATCGATGATTGATTTTGATGAATTCTTGTCTCTGTATGAATCGATTTCGGAAATAAACAGAGGAGGAGAGGAGATTGAGAGCGATCTTTTGAATGCATTCCAAGTGTTCGACGAAAATCGCGATGGTTTTATTTCGTGCGATGAGCTTCACAATGTGTTGGTTAGGTTAGAGCTTTGGGATGATCGACGCTGTGTGCGTGATTGTAGGCGCATGATTGGCGCGTTCGATGTCGATTTGGATGGGCGGCTTGATTTTGAGGAATTCAAGAACATGATGAACTACTCTTCTAATTCTTCGTTTTAG

Homology

[Close]

BLAST of CmoCh09G010550 vs. Swiss-Prot
Match: CML44_ARATH (Probable calcium-binding protein CML44 OS=Arabidopsis thaliana GN=CML44 PE=2 SV=2)

HSP 1 Score: 112.8 bits (281), Expect = 3.2e-24
Identity = 60/145 (41.38%), Postives = 92/145 (63.45%), Query Frame = 1


Query: 7   SDLQRIFETIDRNGDGFVSIEELHWLLNRTG-VDFISDDLESLIGKSMIDFDEFLSLYES 66
           +DL+R+F+T+D+N DG V+++EL W+L++ G  +   D+LE ++GK  +D DEFL  Y  
Sbjct: 9   NDLRRMFKTLDKNQDGLVTLDELLWILDKLGWAEHTPDELELIVGKQSLDLDEFLRFYYD 68

Query: 67  ISEINRGGE-------EIESDLLNAFQVFDENRDGFISCDELHNVLVRLELWDDRRCVRD 126
               ++G +       + +  +  AF VFD N DG+IS +EL +VL RL   ++ +   D
Sbjct: 69  AVLDSKGSKKNIDVVADNDEAIARAFNVFDVNGDGYISAEELRDVLERLGFEEEAK-AWD 128

Query: 127 CRRMIGAFDVDLDGRLDFEEFKNMM 144
           C RMI   D +LDG +DFEEFKNM+
Sbjct: 129 CGRMIRVHDKNLDGFVDFEEFKNMI 152

[Close]

BLAST of CmoCh09G010550 vs. Swiss-Prot
Match: CML42_ARATH (Calcium-binding protein CML42 OS=Arabidopsis thaliana GN=CML42 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.6e-23
Identity = 68/159 (42.77%), Postives = 93/159 (58.49%), Query Frame = 1


Query: 5   NASDLQRIFETIDRNGDGFVSIEELHWLLNRTGVDFISDDLESLI------GKSMIDFDE 64
           NA  LQRIF+  D+NGDGF+++EEL   L R G++    DL+S +      G + ++FD+
Sbjct: 26  NALRLQRIFDLFDKNGDGFITVEELSQALTRLGLNADLSDLKSTVESYIQPGNTGLNFDD 85

Query: 65  FLSLYESISEINRGG--------------EEIESDLLNAFQVFDENRDGFISCDELHNVL 124
           F SL++++ +   GG               E ESDL  AF+VFDEN DGFIS  EL  VL
Sbjct: 86  FSSLHKTLDDSFFGGACGGGENEDDPSSAAENESDLAEAFKVFDENGDGFISARELQTVL 145

Query: 125 VRLELWDDRRCVRDCRRMIGAFDVDLDGRLDFEEFKNMM 144
            +L L +     R   +MI + D + DGR+DF EFKNMM
Sbjct: 146 KKLGLPEGGEMER-VEKMIVSVDRNQDGRVDFFEFKNMM 183

[Close]

BLAST of CmoCh09G010550 vs. Swiss-Prot
Match: CML3_ARATH (Calmodulin-like protein 3 OS=Arabidopsis thaliana GN=CML3 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.9e-22
Identity = 61/143 (42.66%), Postives = 85/143 (59.44%), Query Frame = 1


Query: 7   SDLQRIFETIDRNGDGFVSIEELHWLLNRTGVDFISDDLESLI------GKSMIDFDEFL 66
           ++L RIF+  DRNGDG ++ +EL+  L   G+     DL  +I      G   +D +EF 
Sbjct: 4   AELARIFQMFDRNGDGKITKQELNDSLENLGIYIPDKDLVQMIEKIDLNGDGYVDIEEFG 63

Query: 67  SLYESISEINRGGEEIESDLLNAFQVFDENRDGFISCDELHNVLVRLELWDDRRCVRDCR 126
            LY++I E      + E D+  AF VFD+NRDGFI+ +EL +VL  L L    R + DC+
Sbjct: 64  GLYQTIME----ERDEEEDMREAFNVFDQNRDGFITVEELRSVLASLGL-KQGRTLEDCK 123

Query: 127 RMIGAFDVDLDGRLDFEEFKNMM 144
           RMI   DVD DG ++F+EFK MM
Sbjct: 124 RMISKVDVDGDGMVNFKEFKQMM 141

[Close]

BLAST of CmoCh09G010550 vs. Swiss-Prot
Match: CML22_ORYSJ (Probable calcium-binding protein CML22 OS=Oryza sativa subsp. japonica GN=CML22 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.1e-22
Identity = 67/154 (43.51%), Postives = 88/154 (57.14%), Query Frame = 1


Query: 5   NASDLQRIFETIDRNGDGFVSIEELHWLLNRTGVDFISDDLESLI------GKSMIDFDE 64
           +A++L R+FE  DRNGDG ++ EEL   L + G+   +D+L ++I      G   +D +E
Sbjct: 89  DAAELARVFELFDRNGDGRITREELEDSLGKLGIPVPADELAAVIARIDANGDGCVDVEE 148

Query: 65  FLSLYESI------SEINRGGEEIE---SDLLNAFQVFDENRDGFISCDELHNVLVRLEL 124
           F  LY SI      S+  R  EE E    D+  AF+VFD N DG+I+ DEL  VL  L L
Sbjct: 149 FGELYRSIMAGGDDSKDGRAKEEEEEEDGDMREAFRVFDANGDGYITVDELGAVLASLGL 208

Query: 125 WDDRRCVRDCRRMIGAFDVDLDGRLDFEEFKNMM 144
               R   +CRRMIG  D D DGR+DF EF  MM
Sbjct: 209 -KQGRTAEECRRMIGQVDRDGDGRVDFHEFLQMM 241

[Close]

BLAST of CmoCh09G010550 vs. Swiss-Prot
Match: CML5_ARATH (Calmodulin-like protein 5 OS=Arabidopsis thaliana GN=CML5 PE=2 SV=2)

HSP 1 Score: 100.9 bits (250), Expect = 1.3e-20
Identity = 60/151 (39.74%), Postives = 88/151 (58.28%), Query Frame = 1


Query: 7   SDLQRIFETIDRNGDGFVSIEELHWLLNRTGVDFISDDLESLI------GKSMIDFDEFL 66
           S+L+R+F+  D+NGDG ++ EEL+  L   G+     DL  +I      G   +D DEF 
Sbjct: 64  SELKRVFQMFDKNGDGRITKEELNDSLENLGIYIPDKDLTQMIHKIDANGDGCVDIDEFE 123

Query: 67  SLYESI-SEINRGGEEIESDLLNAFQVFDENRDGFISCDELHNVLVRLELWDDRRCVRDC 126
           SLY SI  E +  GE  E D+ +AF VFD++ DGFI+ +EL +V+  L L    + +  C
Sbjct: 124 SLYSSIVDEHHNDGETEEEDMKDAFNVFDQDGDGFITVEELKSVMASLGL-KQGKTLDGC 183

Query: 127 RRMIGAFDVDLDGRLDFEEFKNMMNYSSNSS 151
           ++MI   D D DGR++++EF  MM     SS
Sbjct: 184 KKMIMQVDADGDGRVNYKEFLQMMKGGGFSS 213

[Close]

BLAST of CmoCh09G010550 vs. TrEMBL
Match: A0A061FHR5_THECC (Calcium-binding EF-hand family protein OS=Theobroma cacao GN=TCM_035222 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 6.0e-38
Identity = 86/159 (54.09%), Postives = 109/159 (68.55%), Query Frame = 1


Query: 1   MSPFNASDLQRIFETIDRNGDGFVSIEELHWLLNRTGVDFISDDLESLIGKSMIDFDEFL 60
           MSP + +DLQRIFE +D+NGDG VS+EEL+WLL R GV F  ++L S +GK  +DF+EFL
Sbjct: 29  MSPLSKNDLQRIFEKLDKNGDGLVSLEELNWLLVRIGVQFSLEELGSFVGKPCLDFNEFL 88

Query: 61  SLYESISEINRGGEEIE----------------SDLLNAFQVFDENRDGFISCDELHNVL 120
             Y+SIS  N  G+ +E                SDL+ AF+VFD N DGFISC+EL +VL
Sbjct: 89  FFYDSISNQNDDGKNMEPAGSGEEDGLIQADEDSDLVKAFKVFDLNGDGFISCEELQSVL 148

Query: 121 VRLELWDDRRCVRDCRRMIGAFDVDLDGRLDFEEFKNMM 144
           VRL LWD+    +DCR MI  +D +LDG +DFEEFKNMM
Sbjct: 149 VRLGLWDE-SSGKDCRNMICFYDTNLDGMVDFEEFKNMM 186

[Close]

BLAST of CmoCh09G010550 vs. TrEMBL
Match: A0A0D2PPZ5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G087100 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.0e-37
Identity = 88/166 (53.01%), Postives = 113/166 (68.07%), Query Frame = 1


Query: 1   MSPFNASDLQRIFETIDRNGDGFVSIEELHWLLNRTG-VDFISDDLESLIGKSMIDFDEF 60
           MSP + +DLQR+FE +D+NGDGFVS+EEL+WLL R G V F  ++LE L+GK  ++ DEF
Sbjct: 34  MSPLSKTDLQRVFEKLDKNGDGFVSLEELNWLLQRIGSVQFSLEELEPLVGKPCLNLDEF 93

Query: 61  LSLYESISE-----------------INRGGEEIESDLLNAFQVFDENRDGFISCDELHN 120
           L  YESIS                  I+ GGEE +SDL  AF+VFD N DGFISC+EL  
Sbjct: 94  LFFYESISNPPAHGGDEEEEEEEELVIHGGGEEEDSDLAKAFKVFDLNGDGFISCEELEY 153

Query: 121 VLVRLELWDDRRCVRDCRRMIGAFDVDLDGRLDFEEFKNMMNYSSN 149
           VL RL LWD+ +  +DCR MI  +D + DG +DF+EFKNMM +SS+
Sbjct: 154 VLERLGLWDE-KSGKDCRSMIWYYDTNSDGMVDFQEFKNMMLHSSS 198

[Close]

BLAST of CmoCh09G010550 vs. TrEMBL
Match: A4L9I0_GOSHI (Putative calcium-binding protein OS=Gossypium hirsutum PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 6.6e-37
Identity = 85/168 (50.60%), Postives = 112/168 (66.67%), Query Frame = 1


Query: 1   MSPFNASDLQRIFETIDRNGDGFVSIEELHWLLNRTGVDFISDDLESLIGKSMIDFDEFL 60
           MSP + +DL+RIFE +D+NGDG VS+EEL+WLL R GV F  ++LESL+GK  + F+EFL
Sbjct: 1   MSPLSKNDLRRIFEKLDKNGDGLVSLEELNWLLERIGVQFSLEELESLVGKPCLGFEEFL 60

Query: 61  SLYESISE--------------------INRGGEEI-----ESDLLNAFQVFDENRDGFI 120
             Y+SIS                     ++ GG++      +SDL  AF+VFD N DGFI
Sbjct: 61  FFYDSISNHNTKIEAAFDEEEEEEEIRMVHGGGDDDDDDHGDSDLAKAFKVFDLNGDGFI 120

Query: 121 SCDELHNVLVRLELWDDRRCVRDCRRMIGAFDVDLDGRLDFEEFKNMM 144
           SC+EL +VLVRL LWD++   +DCR MI  +D +LDG +DFEEFKNMM
Sbjct: 121 SCEELQSVLVRLGLWDEKN-GKDCRNMICFYDTNLDGMIDFEEFKNMM 167

[Close]

BLAST of CmoCh09G010550 vs. TrEMBL
Match: A0A0D2MEI7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G223000 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.1e-36
Identity = 85/170 (50.00%), Postives = 112/170 (65.88%), Query Frame = 1


Query: 1   MSPFNASDLQRIFETIDRNGDGFVSIEELHWLLNRTGVDFISDDLESLIGKSMIDFDEFL 60
           MSP + +DL+RIFE +D+NGDG VS+EEL+WLL R GV F  ++LESL+GK  + F+EFL
Sbjct: 1   MSPLSKNDLRRIFEKLDKNGDGLVSLEELNWLLERIGVQFSLEELESLVGKPCLGFEEFL 60

Query: 61  SLYESISE--------------------INRGGEEI-------ESDLLNAFQVFDENRDG 120
             Y+SIS                     ++ GG++        +SDL  AF+VFD N DG
Sbjct: 61  FFYDSISNHNTKIEAAFDDEEEEEEIRMVHGGGDDDDDDDDHGDSDLAKAFKVFDLNGDG 120

Query: 121 FISCDELHNVLVRLELWDDRRCVRDCRRMIGAFDVDLDGRLDFEEFKNMM 144
           FISC+EL +VLVRL LWD++   +DCR MI  +D +LDG +DFEEFKNMM
Sbjct: 121 FISCEELQSVLVRLGLWDEKN-GKDCRNMICFYDTNLDGMIDFEEFKNMM 169

[Close]

BLAST of CmoCh09G010550 vs. TrEMBL
Match: A0A059C245_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00990 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.3e-36
Identity = 84/157 (53.50%), Postives = 105/157 (66.88%), Query Frame = 1


Query: 1   MSPFNASDLQRIFETIDRNGDGFVSIEELHWLLNRTGVDFISDDLESLIGKSMIDFDEFL 60
           MSP    DL+RIFE +D+NGDG VS+EEL+WLL + G+     +LE  IGK  +DFDEFL
Sbjct: 1   MSPLGTGDLRRIFENLDKNGDGQVSLEELNWLLEKIGIHHSLGELELSIGKPSLDFDEFL 60

Query: 61  SLYESIS-------------EINRGGEEIESDLLNAFQVFDENRDGFISCDELHNVLVRL 120
             Y+SIS             E + G    E+DL  AF+VFD N DGFISCDEL +VL +L
Sbjct: 61  FFYDSISSEETMRSGGVESRESSGGDVNQETDLAEAFKVFDLNDDGFISCDELQSVLSKL 120

Query: 121 ELWDDRRCVRDCRRMIGAFDVDLDGRLDFEEFKNMMN 145
           ELWD+ R  RDC  MI A+D + DG+LDFEEFK+MM+
Sbjct: 121 ELWDE-RSGRDCNSMIRAYDTNNDGKLDFEEFKSMMS 156

[Close]

BLAST of CmoCh09G010550 vs. TAIR10
Match: AT1G21550.1 (AT1G21550.1 Calcium-binding EF-hand family protein)

HSP 1 Score: 112.8 bits (281), Expect = 1.8e-25
Identity = 60/145 (41.38%), Postives = 92/145 (63.45%), Query Frame = 1


Query: 7   SDLQRIFETIDRNGDGFVSIEELHWLLNRTG-VDFISDDLESLIGKSMIDFDEFLSLYES 66
           +DL+R+F+T+D+N DG V+++EL W+L++ G  +   D+LE ++GK  +D DEFL  Y  
Sbjct: 9   NDLRRMFKTLDKNQDGLVTLDELLWILDKLGWAEHTPDELELIVGKQSLDLDEFLRFYYD 68

Query: 67  ISEINRGGE-------EIESDLLNAFQVFDENRDGFISCDELHNVLVRLELWDDRRCVRD 126
               ++G +       + +  +  AF VFD N DG+IS +EL +VL RL   ++ +   D
Sbjct: 69  AVLDSKGSKKNIDVVADNDEAIARAFNVFDVNGDGYISAEELRDVLERLGFEEEAK-AWD 128

Query: 127 CRRMIGAFDVDLDGRLDFEEFKNMM 144
           C RMI   D +LDG +DFEEFKNM+
Sbjct: 129 CGRMIRVHDKNLDGFVDFEEFKNMI 152

[Close]

BLAST of CmoCh09G010550 vs. TAIR10
Match: AT4G20780.1 (AT4G20780.1 calmodulin like 42)

HSP 1 Score: 109.0 bits (271), Expect = 2.6e-24
Identity = 68/159 (42.77%), Postives = 93/159 (58.49%), Query Frame = 1


Query: 5   NASDLQRIFETIDRNGDGFVSIEELHWLLNRTGVDFISDDLESLI------GKSMIDFDE 64
           NA  LQRIF+  D+NGDGF+++EEL   L R G++    DL+S +      G + ++FD+
Sbjct: 26  NALRLQRIFDLFDKNGDGFITVEELSQALTRLGLNADLSDLKSTVESYIQPGNTGLNFDD 85

Query: 65  FLSLYESISEINRGG--------------EEIESDLLNAFQVFDENRDGFISCDELHNVL 124
           F SL++++ +   GG               E ESDL  AF+VFDEN DGFIS  EL  VL
Sbjct: 86  FSSLHKTLDDSFFGGACGGGENEDDPSSAAENESDLAEAFKVFDENGDGFISARELQTVL 145

Query: 125 VRLELWDDRRCVRDCRRMIGAFDVDLDGRLDFEEFKNMM 144
            +L L +     R   +MI + D + DGR+DF EFKNMM
Sbjct: 146 KKLGLPEGGEMER-VEKMIVSVDRNQDGRVDFFEFKNMM 183

[Close]

BLAST of CmoCh09G010550 vs. TAIR10
Match: AT3G07490.1 (AT3G07490.1 ARF-GAP domain 11)

HSP 1 Score: 105.9 bits (263), Expect = 2.2e-23
Identity = 61/143 (42.66%), Postives = 85/143 (59.44%), Query Frame = 1


Query: 7   SDLQRIFETIDRNGDGFVSIEELHWLLNRTGVDFISDDLESLI------GKSMIDFDEFL 66
           ++L RIF+  DRNGDG ++ +EL+  L   G+     DL  +I      G   +D +EF 
Sbjct: 4   AELARIFQMFDRNGDGKITKQELNDSLENLGIYIPDKDLVQMIEKIDLNGDGYVDIEEFG 63

Query: 67  SLYESISEINRGGEEIESDLLNAFQVFDENRDGFISCDELHNVLVRLELWDDRRCVRDCR 126
            LY++I E      + E D+  AF VFD+NRDGFI+ +EL +VL  L L    R + DC+
Sbjct: 64  GLYQTIME----ERDEEEDMREAFNVFDQNRDGFITVEELRSVLASLGL-KQGRTLEDCK 123

Query: 127 RMIGAFDVDLDGRLDFEEFKNMM 144
           RMI   DVD DG ++F+EFK MM
Sbjct: 124 RMISKVDVDGDGMVNFKEFKQMM 141

[Close]

BLAST of CmoCh09G010550 vs. TAIR10
Match: AT5G44460.1 (AT5G44460.1 calmodulin like 43)

HSP 1 Score: 104.8 bits (260), Expect = 4.9e-23
Identity = 64/151 (42.38%), Postives = 90/151 (59.60%), Query Frame = 1


Query: 5   NASDLQRIFETIDRNGDGFVSIEELHWLLNRTGVDFISDDLESLI------GKSMIDFDE 64
           NA  L R+F+  D+N DGF+++EEL   L+R G+D    DL+S +       K+ + FD+
Sbjct: 25  NALRLHRVFDLFDKNNDGFITVEELSQALSRLGLDADFSDLKSTVDSFIKPDKTGLRFDD 84

Query: 65  FLSLYESISEINRGGE------EIESDLLNAFQVFDENRDGFISCDELHNVLVRLELWDD 124
           F +L++++ E   GGE        ESDL  AF VFDE+ DGFIS  EL  VL +L L  +
Sbjct: 85  FAALHKTLDESFFGGEGSCCDGSPESDLEEAFNVFDEDGDGFISAVELQKVLKKLGL-PE 144

Query: 125 RRCVRDCRRMIGAFDVDLDGRLDFEEFKNMM 144
              +    +MI + D + DGR+DF EFKNMM
Sbjct: 145 AGEIEQVEKMIVSVDSNHDGRVDFFEFKNMM 174

[Close]

BLAST of CmoCh09G010550 vs. TAIR10
Match: AT2G43290.1 (AT2G43290.1 Calcium-binding EF-hand family protein)

HSP 1 Score: 100.9 bits (250), Expect = 7.0e-22
Identity = 60/151 (39.74%), Postives = 88/151 (58.28%), Query Frame = 1


Query: 7   SDLQRIFETIDRNGDGFVSIEELHWLLNRTGVDFISDDLESLI------GKSMIDFDEFL 66
           S+L+R+F+  D+NGDG ++ EEL+  L   G+     DL  +I      G   +D DEF 
Sbjct: 64  SELKRVFQMFDKNGDGRITKEELNDSLENLGIYIPDKDLTQMIHKIDANGDGCVDIDEFE 123

Query: 67  SLYESI-SEINRGGEEIESDLLNAFQVFDENRDGFISCDELHNVLVRLELWDDRRCVRDC 126
           SLY SI  E +  GE  E D+ +AF VFD++ DGFI+ +EL +V+  L L    + +  C
Sbjct: 124 SLYSSIVDEHHNDGETEEEDMKDAFNVFDQDGDGFITVEELKSVMASLGL-KQGKTLDGC 183

Query: 127 RRMIGAFDVDLDGRLDFEEFKNMMNYSSNSS 151
           ++MI   D D DGR++++EF  MM     SS
Sbjct: 184 KKMIMQVDADGDGRVNYKEFLQMMKGGGFSS 213

[Close]

BLAST of CmoCh09G010550 vs. NCBI nr
Match: gi|590599643|ref|XP_007019238.1| (Calcium-binding EF-hand family protein [Theobroma cacao])

HSP 1 Score: 165.2 bits (417), Expect = 8.6e-38
Identity = 86/159 (54.09%), Postives = 109/159 (68.55%), Query Frame = 1


Query: 1   MSPFNASDLQRIFETIDRNGDGFVSIEELHWLLNRTGVDFISDDLESLIGKSMIDFDEFL 60
           MSP + +DLQRIFE +D+NGDG VS+EEL+WLL R GV F  ++L S +GK  +DF+EFL
Sbjct: 29  MSPLSKNDLQRIFEKLDKNGDGLVSLEELNWLLVRIGVQFSLEELGSFVGKPCLDFNEFL 88

Query: 61  SLYESISEINRGGEEIE----------------SDLLNAFQVFDENRDGFISCDELHNVL 120
             Y+SIS  N  G+ +E                SDL+ AF+VFD N DGFISC+EL +VL
Sbjct: 89  FFYDSISNQNDDGKNMEPAGSGEEDGLIQADEDSDLVKAFKVFDLNGDGFISCEELQSVL 148

Query: 121 VRLELWDDRRCVRDCRRMIGAFDVDLDGRLDFEEFKNMM 144
           VRL LWD+    +DCR MI  +D +LDG +DFEEFKNMM
Sbjct: 149 VRLGLWDE-SSGKDCRNMICFYDTNLDGMVDFEEFKNMM 186

[Close]

BLAST of CmoCh09G010550 vs. NCBI nr
Match: gi|823162489|ref|XP_012481189.1| (PREDICTED: probable calcium-binding protein CML44 [Gossypium raimondii])

HSP 1 Score: 164.5 bits (415), Expect = 1.5e-37
Identity = 88/166 (53.01%), Postives = 113/166 (68.07%), Query Frame = 1


Query: 1   MSPFNASDLQRIFETIDRNGDGFVSIEELHWLLNRTG-VDFISDDLESLIGKSMIDFDEF 60
           MSP + +DLQR+FE +D+NGDGFVS+EEL+WLL R G V F  ++LE L+GK  ++ DEF
Sbjct: 34  MSPLSKTDLQRVFEKLDKNGDGFVSLEELNWLLQRIGSVQFSLEELEPLVGKPCLNLDEF 93

Query: 61  LSLYESISE-----------------INRGGEEIESDLLNAFQVFDENRDGFISCDELHN 120
           L  YESIS                  I+ GGEE +SDL  AF+VFD N DGFISC+EL  
Sbjct: 94  LFFYESISNPPAHGGDEEEEEEEELVIHGGGEEEDSDLAKAFKVFDLNGDGFISCEELEY 153

Query: 121 VLVRLELWDDRRCVRDCRRMIGAFDVDLDGRLDFEEFKNMMNYSSN 149
           VL RL LWD+ +  +DCR MI  +D + DG +DF+EFKNMM +SS+
Sbjct: 154 VLERLGLWDE-KSGKDCRSMIWYYDTNSDGMVDFQEFKNMMLHSSS 198

[Close]

BLAST of CmoCh09G010550 vs. NCBI nr
Match: gi|133902320|gb|ABO41848.1| (putative calcium-binding protein [Gossypium hirsutum])

HSP 1 Score: 161.8 bits (408), Expect = 9.5e-37
Identity = 85/168 (50.60%), Postives = 112/168 (66.67%), Query Frame = 1


Query: 1   MSPFNASDLQRIFETIDRNGDGFVSIEELHWLLNRTGVDFISDDLESLIGKSMIDFDEFL 60
           MSP + +DL+RIFE +D+NGDG VS+EEL+WLL R GV F  ++LESL+GK  + F+EFL
Sbjct: 1   MSPLSKNDLRRIFEKLDKNGDGLVSLEELNWLLERIGVQFSLEELESLVGKPCLGFEEFL 60

Query: 61  SLYESISE--------------------INRGGEEI-----ESDLLNAFQVFDENRDGFI 120
             Y+SIS                     ++ GG++      +SDL  AF+VFD N DGFI
Sbjct: 61  FFYDSISNHNTKIEAAFDEEEEEEEIRMVHGGGDDDDDDHGDSDLAKAFKVFDLNGDGFI 120

Query: 121 SCDELHNVLVRLELWDDRRCVRDCRRMIGAFDVDLDGRLDFEEFKNMM 144
           SC+EL +VLVRL LWD++   +DCR MI  +D +LDG +DFEEFKNMM
Sbjct: 121 SCEELQSVLVRLGLWDEKN-GKDCRNMICFYDTNLDGMIDFEEFKNMM 167

[Close]

BLAST of CmoCh09G010550 vs. NCBI nr
Match: gi|823136399|ref|XP_012467960.1| (PREDICTED: probable calcium-binding protein CML44 [Gossypium raimondii])

HSP 1 Score: 161.0 bits (406), Expect = 1.6e-36
Identity = 85/170 (50.00%), Postives = 112/170 (65.88%), Query Frame = 1


Query: 1   MSPFNASDLQRIFETIDRNGDGFVSIEELHWLLNRTGVDFISDDLESLIGKSMIDFDEFL 60
           MSP + +DL+RIFE +D+NGDG VS+EEL+WLL R GV F  ++LESL+GK  + F+EFL
Sbjct: 1   MSPLSKNDLRRIFEKLDKNGDGLVSLEELNWLLERIGVQFSLEELESLVGKPCLGFEEFL 60

Query: 61  SLYESISE--------------------INRGGEEI-------ESDLLNAFQVFDENRDG 120
             Y+SIS                     ++ GG++        +SDL  AF+VFD N DG
Sbjct: 61  FFYDSISNHNTKIEAAFDDEEEEEEIRMVHGGGDDDDDDDDHGDSDLAKAFKVFDLNGDG 120

Query: 121 FISCDELHNVLVRLELWDDRRCVRDCRRMIGAFDVDLDGRLDFEEFKNMM 144
           FISC+EL +VLVRL LWD++   +DCR MI  +D +LDG +DFEEFKNMM
Sbjct: 121 FISCEELQSVLVRLGLWDEKN-GKDCRNMICFYDTNLDGMIDFEEFKNMM 169

[Close]

BLAST of CmoCh09G010550 vs. NCBI nr
Match: gi|659081990|ref|XP_008441608.1| (PREDICTED: probable calcium-binding protein CML44 [Cucumis melo])

HSP 1 Score: 159.5 bits (402), Expect = 4.7e-36
Identity = 84/157 (53.50%), Postives = 107/157 (68.15%), Query Frame = 1


Query: 1   MSPFNASDLQRIFETIDRNGDGFVSIEELHWLLNRTGVDFISDDLESLIGKSMIDFDEFL 60
           MSP ++ DL RIF+ +D+N DG + ++EL WLL+R G+    ++LES + K  +DFDEFL
Sbjct: 1   MSPISSKDLHRIFKKLDKNCDGLLCLQELKWLLDRIGIQLTMEELESFLEKPSLDFDEFL 60

Query: 61  SLYESISEINRG----------GEEIESD---LLNAFQVFDENRDGFISCDELHNVLVRL 120
             YESIS+ N+G           ++ E D   +  AF+VFD N DGFISCDEL NVLVRL
Sbjct: 61  FFYESISKQNKGECKGGVAGCVQDDHEDDTEIVYMAFKVFDMNGDGFISCDELENVLVRL 120

Query: 121 ELWDDRRCVRD-CRRMIGAFDVDLDGRLDFEEFKNMM 144
           ELWD  R   D CR MI A+D +LDG+LDFEEFKNMM
Sbjct: 121 ELWDASRSEVDYCRSMIQAYDTNLDGKLDFEEFKNMM 157

The following BLAST results are available for this feature:

BLAST of CmoCh09G010550 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CML44_ARATH	3.2e-24	41.38	Probable calcium-binding protein CML44 OS=Arabidopsis thaliana GN=CML44 PE=2 SV=...	[more]
CML42_ARATH	4.6e-23	42.77	Calcium-binding protein CML42 OS=Arabidopsis thaliana GN=CML42 PE=1 SV=1	[more]
CML3_ARATH	3.9e-22	42.66	Calmodulin-like protein 3 OS=Arabidopsis thaliana GN=CML3 PE=2 SV=1	[more]
CML22_ORYSJ	5.1e-22	43.51	Probable calcium-binding protein CML22 OS=Oryza sativa subsp. japonica GN=CML22 ...	[more]
CML5_ARATH	1.3e-20	39.74	Calmodulin-like protein 5 OS=Arabidopsis thaliana GN=CML5 PE=2 SV=2	[more]

BLAST of CmoCh09G010550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061FHR5_THECC	6.0e-38	54.09	Calcium-binding EF-hand family protein OS=Theobroma cacao GN=TCM_035222 PE=4 SV=...	[more]
A0A0D2PPZ5_GOSRA	1.0e-37	53.01	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G087100 PE=4 SV=1	[more]
A4L9I0_GOSHI	6.6e-37	50.60	Putative calcium-binding protein OS=Gossypium hirsutum PE=4 SV=1	[more]
A0A0D2MEI7_GOSRA	1.1e-36	50.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G223000 PE=4 SV=1	[more]
A0A059C245_EUCGR	4.3e-36	53.50	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00990 PE=4 SV=1	[more]

BLAST of CmoCh09G010550 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G21550.1	1.8e-25	41.38	Calcium-binding EF-hand family protein	[more]
AT4G20780.1	2.6e-24	42.77	calmodulin like 42	[more]
AT3G07490.1	2.2e-23	42.66	ARF-GAP domain 11	[more]
AT5G44460.1	4.9e-23	42.38	calmodulin like 43	[more]
AT2G43290.1	7.0e-22	39.74	Calcium-binding EF-hand family protein	[more]

BLAST of CmoCh09G010550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|590599643\|ref\|XP_007019238.1\|	8.6e-38	54.09	Calcium-binding EF-hand family protein [Theobroma cacao]	[more]
gi\|823162489\|ref\|XP_012481189.1\|	1.5e-37	53.01	PREDICTED: probable calcium-binding protein CML44 [Gossypium raimondii]	[more]
gi\|133902320\|gb\|ABO41848.1\|	9.5e-37	50.60	putative calcium-binding protein [Gossypium hirsutum]	[more]
gi\|823136399\|ref\|XP_012467960.1\|	1.6e-36	50.00	PREDICTED: probable calcium-binding protein CML44 [Gossypium raimondii]	[more]
gi\|659081990\|ref\|XP_008441608.1\|	4.7e-36	53.50	PREDICTED: probable calcium-binding protein CML44 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002048	EF_hand_dom
IPR011992	EF-hand-dom_pair
IPR018247	EF_Hand_1_Ca_BS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G010550.1	CmoCh09G010550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	PFAM	PF00036	EF-hand_1	coord: 8..34 score: 2.
IPR002048	EF-hand domain	PFAM	PF13499	EF-hand_7	coord: 78..143 score: 5.
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 8..36 score: 7.1E-5coord: 118..146 score: 0.28coord: 79..107 score: 0.
IPR002048	EF-hand domain	PROFILE	PS50222	EF_HAND_2	coord: 75..110 score: 13.425coord: 4..39 score: 13.621coord: 114..149 score: 11
IPR011992	EF-hand domain pair	GENE3D	G3DSA:1.10.238.10		coord: 91..143 score: 2.9E-16coord: 7..90 score: 2.2
IPR011992	EF-hand domain pair	unknown	SSF47473	EF-hand	coord: 7..143 score: 4.39
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 88..100 score: -coord: 17..29 scor
None	No IPR available	PANTHER	PTHR10891	EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN	coord: 1..147 score: 4.9
None	No IPR available	PANTHER	PTHR10891:SF530	SUBFAMILY NOT NAMED	coord: 1..147 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh09G010550	CmaCh09G010490	Cucurbita maxima (Rimu)	cmacmoB027
CmoCh09G010550	CmaCh04G023940	Cucurbita maxima (Rimu)	cmacmoB675
CmoCh09G010550	CmaCh15G006470	Cucurbita maxima (Rimu)	cmacmoB283
CmoCh09G010550	Cla005576	Watermelon (97103) v1	cmowmB001
CmoCh09G010550	Cla013901	Watermelon (97103) v1	cmowmB009
CmoCh09G010550	ClCG09G021840	Watermelon (Charleston Gray)	cmowcgB001
CmoCh09G010550	ClCG08G006060	Watermelon (Charleston Gray)	cmowcgB026
CmoCh09G010550	Lsi02G017750	Bottle gourd (USVL1VR-Ls)	cmolsiB006
CmoCh09G010550	Cp4.1LG01g20760	Cucurbita pepo (Zucchini)	cmocpeB014
CmoCh09G010550	Cp4.1LG13g04330	Cucurbita pepo (Zucchini)	cmocpeB009
CmoCh09G010550	Cp4.1LG06g08010	Cucurbita pepo (Zucchini)	cmocpeB034
CmoCh09G010550	Cla97C08G148820	Watermelon (97103) v2	cmowmbB026
CmoCh09G010550	Cla97C09G183290	Watermelon (97103) v2	cmowmbB035
CmoCh09G010550	Carg15752	Silver-seed gourd	carcmoB0091
CmoCh09G010550	Carg01562	Silver-seed gourd	carcmoB1116
CmoCh09G010550	Carg26621	Silver-seed gourd	carcmoB1383

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh09G010550	CmoCh15G006570	Cucurbita moschata (Rifu)	cmocmoB009
CmoCh09G010550	CmoCh04G025100	Cucurbita moschata (Rifu)	cmocmoB029

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh09G010550	Wax gourd	cmowgoB0021
CmoCh09G010550	Cucurbita maxima (Rimu)	cmacmoB436
CmoCh09G010550	Cucurbita moschata (Rifu)	cmocmoB018
CmoCh09G010550	Melon (DHL92) v3.5.1	cmomeB004
CmoCh09G010550	Cucurbita pepo (Zucchini)	cmocpeB021
CmoCh09G010550	Melon (DHL92) v3.6.1	cmomedB003
CmoCh09G010550	Silver-seed gourd	carcmoB0106