CmaCh04G009600 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G009600
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionDUF4228 domain protein
LocationCma_Chr04 : 4931908 .. 4932234 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAACTGTGTTTCCAACAAAATTTTCTGTGGGAAATCATCGAGAATTAGTGATGAAGAGGCTCTGGAAATGGTGAAGAGAAGCCTCATGGCCTACGACGAGGCTCTGGTGGCCTCTGCGACGATGACCACGACAGAGTTGAAGATCAAGATCACAAAGAGAGAGCTGGAGATGTTATTAGCTAATTATAATGTGGTAGAGGTGAAGGAAGAGCTGCAGATGGAGGAGCAGCTGTTGTCGCCACTGTTTTACGTCGATGGTACGCTCGAGATGCAGCCACGATCGTGGCAGCCTTCCCTGCAGAGTATCCCTGAGGCGGATTGA

mRNA sequence

ATGGGAAACTGTGTTTCCAACAAAATTTTCTGTGGGAAATCATCGAGAATTAGTGATGAAGAGGCTCTGGAAATGGTGAAGAGAAGCCTCATGGCCTACGACGAGGCTCTGGTGGCCTCTGCGACGATGACCACGACAGAGTTGAAGATCAAGATCACAAAGAGAGAGCTGGAGATGTTATTAGCTAATTATAATGTGGTAGAGGTGAAGGAAGAGCTGCAGATGGAGGAGCAGCTGTTGTCGCCACTGTTTTACGTCGATGGTACGCTCGAGATGCAGCCACGATCGTGGCAGCCTTCCCTGCAGAGTATCCCTGAGGCGGATTGA

Coding sequence (CDS)

ATGGGAAACTGTGTTTCCAACAAAATTTTCTGTGGGAAATCATCGAGAATTAGTGATGAAGAGGCTCTGGAAATGGTGAAGAGAAGCCTCATGGCCTACGACGAGGCTCTGGTGGCCTCTGCGACGATGACCACGACAGAGTTGAAGATCAAGATCACAAAGAGAGAGCTGGAGATGTTATTAGCTAATTATAATGTGGTAGAGGTGAAGGAAGAGCTGCAGATGGAGGAGCAGCTGTTGTCGCCACTGTTTTACGTCGATGGTACGCTCGAGATGCAGCCACGATCGTGGCAGCCTTCCCTGCAGAGTATCCCTGAGGCGGATTGA

Protein sequence

MGNCVSNKIFCGKSSRISDEEALEMVKRSLMAYDEALVASATMTTTELKIKITKRELEMLLANYNVVEVKEELQMEEQLLSPLFYVDGTLEMQPRSWQPSLQSIPEAD
Homology
[Close]
BLAST of CmaCh04G009600 vs. TrEMBL
Match: A0A0A0L7M3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G076570 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.9e-26
Identity = 70/114 (61.40%), Postives = 81/114 (71.05%), Query Frame = 1 

Query: 1   MGNCVSNKIFCGKSSRI-SDEEALEMVKRSLMAYDEALVASATMTTTELKIKITKRELEM 60
           MGNCVS+   CGK +RI SDEEALEM+KR +MAYDE   +S   TTTE+KIKITK+ELEM
Sbjct: 1   MGNCVSSNCLCGKPTRILSDEEALEMMKRRIMAYDETPRSSKAATTTEVKIKITKKELEM 60

Query: 61  LLANYNVVEVKEELQMEEQLLSPL-----FYVDGTLEMQPRSWQPSLQSIPEAD 109
           LL NY VVEVK+EL        P+       +D   EMQPRSW+PSLQSIPE D
Sbjct: 61  LLGNYTVVEVKDELPSAHFFSQPIVELQPIDIDDAFEMQPRSWRPSLQSIPEMD 114

[Close]
BLAST of CmaCh04G009600 vs. TrEMBL
Match: A0A0A0L2D8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G076560 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.6e-11
Identity = 57/111 (51.35%), Postives = 68/111 (61.26%), Query Frame = 1 

Query: 1   MGNCVSNKIFCGKSSRISD--EEALEMVKRSLMAYDEALVASATMTTTELKIKITKRELE 60
           MGNC SNK        +SD  EE  EM++R L+  + A   SA+ TTTELKI+ITKRELE
Sbjct: 1   MGNCTSNKYLAETIVPMSDDDEEVEEMLRRRLVVKNGAQKCSAS-TTTELKIRITKRELE 60

Query: 61  MLLANYNVVEVKEELQMEEQLLSPLFYVDGTLE-MQPRSWQPSLQSIPEAD 109
            LL   +V    EEL + E LLS L  V  T E    RSW+PSLQSIPE +
Sbjct: 61  KLLCKVDV----EELPVTE-LLSKLIDVGDTFESTHQRSWRPSLQSIPEVN 105

[Close]
BLAST of CmaCh04G009600 vs. NCBI nr
Match: gi|659126879|ref|XP_008463410.1| (PREDICTED: uncharacterized protein LOC103501581 [Cucumis melo])

HSP 1 Score: 137.1 bits (344), Expect = 1.8e-29
Identity = 77/118 (65.25%), Postives = 90/118 (76.27%), Query Frame = 1 

Query: 1   MGNCVSNKIFCGKSSRISDEEALEMVKRSLMAYDE----------ALVASATMTTTELKI 60
           MGNCVS+K  CGKS+RISDEEALEM+KR++MAY++          + VA+ T TTTE+KI
Sbjct: 1   MGNCVSSKYLCGKSTRISDEEALEMMKRTVMAYNDETPKIDETPRSSVAATTTTTTEVKI 60

Query: 61  KITKRELEMLLANYNVVEVKEELQMEEQLLSPLFYVDGTLEMQPRSWQPSLQSIPEAD 109
           KITKRELEMLL NY VVEVKEEL    Q LS L  +D  +EMQPRSW+PSLQSIPE D
Sbjct: 61  KITKRELEMLLGNYKVVEVKEELS-TTQFLSRLIDIDEGIEMQPRSWRPSLQSIPETD 117

[Close]
BLAST of CmaCh04G009600 vs. NCBI nr
Match: gi|778688380|ref|XP_011652736.1| (PREDICTED: uncharacterized protein LOC105435072 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 7.1e-26
Identity = 70/114 (61.40%), Postives = 81/114 (71.05%), Query Frame = 1 

Query: 1   MGNCVSNKIFCGKSSRI-SDEEALEMVKRSLMAYDEALVASATMTTTELKIKITKRELEM 60
           MGNCVS+   CGK +RI SDEEALEM+KR +MAYDE   +S   TTTE+KIKITK+ELEM
Sbjct: 1   MGNCVSSNCLCGKPTRILSDEEALEMMKRRIMAYDETPRSSKAATTTEVKIKITKKELEM 60

Query: 61  LLANYNVVEVKEELQMEEQLLSPL-----FYVDGTLEMQPRSWQPSLQSIPEAD 109
           LL NY VVEVK+EL        P+       +D   EMQPRSW+PSLQSIPE D
Sbjct: 61  LLGNYTVVEVKDELPSAHFFSQPIVELQPIDIDDAFEMQPRSWRPSLQSIPEMD 114

[Close]
BLAST of CmaCh04G009600 vs. NCBI nr
Match: gi|700200987|gb|KGN56120.1| (hypothetical protein Csa_3G076560 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10
Identity = 57/111 (51.35%), Postives = 68/111 (61.26%), Query Frame = 1 

Query: 1   MGNCVSNKIFCGKSSRISD--EEALEMVKRSLMAYDEALVASATMTTTELKIKITKRELE 60
           MGNC SNK        +SD  EE  EM++R L+  + A   SA+ TTTELKI+ITKRELE
Sbjct: 1   MGNCTSNKYLAETIVPMSDDDEEVEEMLRRRLVVKNGAQKCSAS-TTTELKIRITKRELE 60

Query: 61  MLLANYNVVEVKEELQMEEQLLSPLFYVDGTLE-MQPRSWQPSLQSIPEAD 109
            LL   +V    EEL + E LLS L  V  T E    RSW+PSLQSIPE +
Sbjct: 61  KLLCKVDV----EELPVTE-LLSKLIDVGDTFESTHQRSWRPSLQSIPEVN 105

[Close]
BLAST of CmaCh04G009600 vs. NCBI nr
Match: gi|659126877|ref|XP_008463409.1| (PREDICTED: uncharacterized protein LOC103501580 [Cucumis melo])

HSP 1 Score: 72.0 bits (175), Expect = 7.1e-10
Identity = 54/110 (49.09%), Postives = 65/110 (59.09%), Query Frame = 1 

Query: 1   MGNCVSNKIFCGKSSRISDEEALE-MVKRSLMAYDEALVASATMTTTELKIKITKRELEM 60
           MGNC SNK          DEE +E M++R L+    A   SA+ TTTELKI+ITK+ELE 
Sbjct: 1   MGNCTSNKYLAETMPMSDDEEEVEEMLRRRLVVESRAQKCSAS-TTTELKIRITKKELEK 60

Query: 61  LLANYNVVEVKEELQMEEQLLSPLFYVDGTLE-MQPRSWQPSLQSIPEAD 109
           LL   ++    EEL + E LLS L  V    E    RSWQPSLQSIPE +
Sbjct: 61  LLCKVDM----EELPVAE-LLSKLIDVGDAFESTHRRSWQPSLQSIPEVN 104

The following BLAST results are available for this feature:
BLAST of CmaCh04G009600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G009600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7M3_CUCSA4.9e-2661.40Uncharacterized protein OS=Cucumis sativus GN=Csa_3G076570 PE=4 SV=1[more]
A0A0A0L2D8_CUCSA7.6e-1151.35Uncharacterized protein OS=Cucumis sativus GN=Csa_3G076560 PE=4 SV=1[more]
BLAST of CmaCh04G009600 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G009600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659126879|ref|XP_008463410.1|1.8e-2965.25PREDICTED: uncharacterized protein LOC103501581 [Cucumis melo][more]
gi|778688380|ref|XP_011652736.1|7.1e-2661.40PREDICTED: uncharacterized protein LOC105435072 [Cucumis sativus][more]
gi|700200987|gb|KGN56120.1|1.1e-1051.35hypothetical protein Csa_3G076560 [Cucumis sativus][more]
gi|659126877|ref|XP_008463409.1|7.1e-1049.09PREDICTED: uncharacterized protein LOC103501580 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G009600.1CmaCh04G009600.1mRNA