MELO3C025368 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025368
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	DUF4228 domain protein
Location	chr6 : 29177920 .. 29178730 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATCTCACTTTCCTCTGTCTCCCCTCTCTCTCTCCCCTGAGAGATTTATAGCAATTAGAAGCATTCCCCATGGGAAACTGTGTGAGCAGCAAATATTTATGTGGAAAATCAACAAGAATTAGCGATGAGGAAGCTCTAGAGATGATGAAGAGAACTGTCATGGCTTACAACGACGAGACTCCAAAGATCGACGAGACTCCAAGATCTTCGGTGGCAGCAACAACGACAACGACAACGGAGGTGAAGATCAAGATCACAAAAAGAGAACTAGAGATGTTACTAGGTAATTATAAGGTGGTGGAGGTGAAGGAAGAGCTGTCCACAACACAATTCTTATCACGGCTAATCGACATCGACGAAGGCATCGAGATGCAGCCACGATCATGGCGACCTTCTCTGCAGAGTATCCCGGAGACGGATTGAAATCCAGAGTGATTTTATCATTTATTTTTTCTTCTTACTCCTCTAGTTATGGTGTGTGGTTCCATGAAAACTTTTGGGATCTCTGTTTCTCTCTGGTTTAATATTGGAGTTTTTTGGTCTCCAAAATTGTTTTTCTGAGACACATATATAGAACCAAAGTGATAGTAAACTTTGTTCTTTTTCTTTTAAACTATCGGTTATTAATACGGGAGTAGGGAAACAAAGATTCGAACCTCCAATTTTATTCCCATGTTGAAGAAGTATATATGTAAATTATTAATGTGTTATGTTCATCTTAGCAAACCTCGAATGTTGTTTGTAAATTGAGTGTCTAATGTATCGATTGTTCTGTTATGGAATAGCTACTGTCTCTTGAAAGCAAATTAA

mRNA sequence

AAATCTCACTTTCCTCTGTCTCCCCTCTCTCTCTCCCCTGAGAGATTTATAGCAATTAGAAGCATTCCCCATGGGAAACTGTGTGAGCAGCAAATATTTATGTGGAAAATCAACAAGAATTAGCGATGAGGAAGCTCTAGAGATGATGAAGAGAACTGTCATGGCTTACAACGACGAGACTCCAAAGATCGACGAGACTCCAAGATCTTCGGTGGCAGCAACAACGACAACGACAACGGAGGTGAAGATCAAGATCACAAAAAGAGAACTAGAGATGTTACTAGGTAATTATAAGGTGGTGGAGGTGAAGGAAGAGCTGTCCACAACACAATTCTTATCACGGCTAATCGACATCGACGAAGGCATCGAGATGCAGCCACGATCATGGCGACCTTCTCTGCAGAGTATCCCGGAGACGGATTGAAATCCAGAGTGATTTTATCATTTATTTTTTCTTCTTACTCCTCTAGTTATGGTGTGTGGTTCCATGAAAACTTTTGGGATCTCTGTTTCTCTCTGGTTTAATATTGGAGTTTTTTGGTCTCCAAAATTGTTTTTCTGAGACACATATATAGAACCAAAGTGATAGTAAACTTTGTTCTTTTTCTTTTAAACTATCGGTTATTAATACGGGAGTAGGGAAACAAAGATTCGAACCTCCAATTTTATTCCCATGTTGAAGAAGTATATATGTAAATTATTAATGTGTTATGTTCATCTTAGCAAACCTCGAATGTTGTTTGTAAATTGAGTGTCTAATGTATCGATTGTTCTGTTATGGAATAGCTACTGTCTCTTGAAAGCAAATTAA

Coding sequence (CDS)

ATGGGAAACTGTGTGAGCAGCAAATATTTATGTGGAAAATCAACAAGAATTAGCGATGAGGAAGCTCTAGAGATGATGAAGAGAACTGTCATGGCTTACAACGACGAGACTCCAAAGATCGACGAGACTCCAAGATCTTCGGTGGCAGCAACAACGACAACGACAACGGAGGTGAAGATCAAGATCACAAAAAGAGAACTAGAGATGTTACTAGGTAATTATAAGGTGGTGGAGGTGAAGGAAGAGCTGTCCACAACACAATTCTTATCACGGCTAATCGACATCGACGAAGGCATCGAGATGCAGCCACGATCATGGCGACCTTCTCTGCAGAGTATCCCGGAGACGGATTGA

Protein sequence

MGNCVSSKYLCGKSTRISDEEALEMMKRTVMAYNDETPKIDETPRSSVAATTTTTTEVKIKITKRELEMLLGNYKVVEVKEELSTTQFLSRLIDIDEGIEMQPRSWRPSLQSIPETD*

Homology

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BLAST of MELO3C025368 vs. TrEMBL
Match: A0A0A0L7M3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G076570 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.2e-33
Identity = 87/124 (70.16%), Postives = 93/124 (75.00%), Query Frame = 1


Query: 1   MGNCVSSKYLCGKSTRI-SDEEALEMMKRTVMAYNDETPKIDETPRSSVAATTTTTTEVK 60
           MGNCVSS  LCGK TRI SDEEALEMMKR +MAY       DETPRSS AA   TTTEVK
Sbjct: 1   MGNCVSSNCLCGKPTRILSDEEALEMMKRRIMAY-------DETPRSSKAA---TTTEVK 60

Query: 61  IKITKRELEMLLGNYKVVEVKEELSTTQFLS------RLIDIDEGIEMQPRSWRPSLQSI 118
           IKITK+ELEMLLGNY VVEVK+EL +  F S      + IDID+  EMQPRSWRPSLQSI
Sbjct: 61  IKITKKELEMLLGNYTVVEVKDELPSAHFFSQPIVELQPIDIDDAFEMQPRSWRPSLQSI 114

[Close]

BLAST of MELO3C025368 vs. TrEMBL
Match: A0A0A0L2D8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G076560 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-13
Identity = 54/120 (45.00%), Postives = 70/120 (58.33%), Query Frame = 1


Query: 1   MGNCVSSKYLCGKSTRISD--EEALEMMKRTVMAYNDETPKIDETPRSSVAATTTTTTEV 60
           MGNC S+KYL      +SD  EE  EM++R ++  N            +   + +TTTE+
Sbjct: 1   MGNCTSNKYLAETIVPMSDDDEEVEEMLRRRLVVKN-----------GAQKCSASTTTEL 60

Query: 61  KIKITKRELEMLLGNYKVVEVKEELSTTQFLSRLIDIDEGIE-MQPRSWRPSLQSIPETD 118
           KI+ITKRELE LL    V    EEL  T+ LS+LID+ +  E    RSWRPSLQSIPE +
Sbjct: 61  KIRITKRELEKLLCKVDV----EELPVTELLSKLIDVGDTFESTHQRSWRPSLQSIPEVN 105

[Close]

BLAST of MELO3C025368 vs. TrEMBL
Match: B9SAC3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0584600 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-08
Identity = 39/77 (50.65%), Postives = 54/77 (70.13%), Query Frame = 1


Query: 40  IDETPRSSVAATTTTTTEVKIKITKRELEMLLGNYKVVEVKEELSTTQFLSRLIDI-DEG 99
           + E   S++++ T T+TEVKIKITK++LE LLG    V++K ELS  Q L++L+ + D  
Sbjct: 42  LGEDKGSTISSATVTSTEVKIKITKKQLEELLGR---VDMK-ELSIEQVLAQLMKVGDPS 101

Query: 100 IEMQPRSWRPSLQSIPE 116
            E   RSWRP+LQSIPE
Sbjct: 102 FETHQRSWRPNLQSIPE 114

[Close]

BLAST of MELO3C025368 vs. TrEMBL
Match: M1D5Q7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400032292 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-08
Identity = 40/117 (34.19%), Postives = 65/117 (55.56%), Query Frame = 1


Query: 1   MGNCVSSKYLCGKSTRISDEEALEMMKRTVMAYNDETPKIDETPRSSVAATTTTTTEVKI 60
           MGNC+  +                ++K   +   DE   ++E  +  + ++ + T EVKI
Sbjct: 1   MGNCIRKESFPSP-----------LLKAKTVNLEDELLLMEEN-KDCIYSSASLTKEVKI 60

Query: 61  KITKRELEMLLGNYKVVEVKEELSTTQFLSRLIDIDEGIEMQPRSWRPSLQSIPETD 118
           KITK++L  L+G   V    + LS  Q L +L+++ EG+E++ RSWRP+LQSIPE +
Sbjct: 61  KITKKQLFELMGKADV----QGLSVHQLLKQLMNVTEGLELRQRSWRPALQSIPEVN 101

[Close]

BLAST of MELO3C025368 vs. TrEMBL
Match: B9GHW9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s42640g PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.9e-08
Identity = 51/120 (42.50%), Postives = 68/120 (56.67%), Query Frame = 1


Query: 1   MGNCV--SSKYLCGKSTRISDEEALEMMKRTVMAYNDETPKIDETPRSSVAATTTTTTEV 60
           MGNC+   S+   G   +   E+A+  +K   +  ++ T    E    S   TTT+TT+V
Sbjct: 1   MGNCLRHESQDFSGFDMQ---EKAMNSIKEEGLLGDNNT---GEFTSCSPTTTTTSTTKV 60

Query: 61  KIKITKRELEMLLGNYKVVEVKEELSTTQFLSRLID---IDEGIEMQPRSWRPSLQSIPE 116
           KIKITK++LE L+G    VEVK ELS  Q LS L++    D   E    SWRP+LQSIPE
Sbjct: 61  KIKITKKQLEELIGK---VEVK-ELSVQQILSMLMNGSSNDRSYEAHQLSWRPNLQSIPE 110

[Close]

BLAST of MELO3C025368 vs. NCBI nr
Match: gi|659126879|ref|XP_008463410.1| (PREDICTED: uncharacterized protein LOC103501581 [Cucumis melo])

HSP 1 Score: 231.9 bits (590), Expect = 5.9e-58
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1


Query: 1   MGNCVSSKYLCGKSTRISDEEALEMMKRTVMAYNDETPKIDETPRSSVAATTTTTTEVKI 60
           MGNCVSSKYLCGKSTRISDEEALEMMKRTVMAYNDETPKIDETPRSSVAATTTTTTEVKI
Sbjct: 1   MGNCVSSKYLCGKSTRISDEEALEMMKRTVMAYNDETPKIDETPRSSVAATTTTTTEVKI 60

Query: 61  KITKRELEMLLGNYKVVEVKEELSTTQFLSRLIDIDEGIEMQPRSWRPSLQSIPETD 118
           KITKRELEMLLGNYKVVEVKEELSTTQFLSRLIDIDEGIEMQPRSWRPSLQSIPETD
Sbjct: 61  KITKRELEMLLGNYKVVEVKEELSTTQFLSRLIDIDEGIEMQPRSWRPSLQSIPETD 117

[Close]

BLAST of MELO3C025368 vs. NCBI nr
Match: gi|778688380|ref|XP_011652736.1| (PREDICTED: uncharacterized protein LOC105435072 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 1.7e-33
Identity = 87/124 (70.16%), Postives = 93/124 (75.00%), Query Frame = 1


Query: 1   MGNCVSSKYLCGKSTRI-SDEEALEMMKRTVMAYNDETPKIDETPRSSVAATTTTTTEVK 60
           MGNCVSS  LCGK TRI SDEEALEMMKR +MAY       DETPRSS AA   TTTEVK
Sbjct: 1   MGNCVSSNCLCGKPTRILSDEEALEMMKRRIMAY-------DETPRSSKAA---TTTEVK 60

Query: 61  IKITKRELEMLLGNYKVVEVKEELSTTQFLS------RLIDIDEGIEMQPRSWRPSLQSI 118
           IKITK+ELEMLLGNY VVEVK+EL +  F S      + IDID+  EMQPRSWRPSLQSI
Sbjct: 61  IKITKKELEMLLGNYTVVEVKDELPSAHFFSQPIVELQPIDIDDAFEMQPRSWRPSLQSI 114

[Close]

BLAST of MELO3C025368 vs. NCBI nr
Match: gi|700200987|gb|KGN56120.1| (hypothetical protein Csa_3G076560 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 2.0e-13
Identity = 54/120 (45.00%), Postives = 70/120 (58.33%), Query Frame = 1


Query: 1   MGNCVSSKYLCGKSTRISD--EEALEMMKRTVMAYNDETPKIDETPRSSVAATTTTTTEV 60
           MGNC S+KYL      +SD  EE  EM++R ++  N            +   + +TTTE+
Sbjct: 1   MGNCTSNKYLAETIVPMSDDDEEVEEMLRRRLVVKN-----------GAQKCSASTTTEL 60

Query: 61  KIKITKRELEMLLGNYKVVEVKEELSTTQFLSRLIDIDEGIE-MQPRSWRPSLQSIPETD 118
           KI+ITKRELE LL    V    EEL  T+ LS+LID+ +  E    RSWRPSLQSIPE +
Sbjct: 61  KIRITKRELEKLLCKVDV----EELPVTELLSKLIDVGDTFESTHQRSWRPSLQSIPEVN 105

[Close]

BLAST of MELO3C025368 vs. NCBI nr
Match: gi|659126877|ref|XP_008463409.1| (PREDICTED: uncharacterized protein LOC103501580 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 6.4e-12
Identity = 49/118 (41.53%), Postives = 64/118 (54.24%), Query Frame = 1


Query: 1   MGNCVSSKYLCGKSTRISDEEALEMMKRTVMAYNDETPKIDETPRSSVAATTTTTTEVKI 60
           MGNC S+KYL        DEE +E M R  +       K           + +TTTE+KI
Sbjct: 1   MGNCTSNKYLAETMPMSDDEEEVEEMLRRRLVVESRAQK----------CSASTTTELKI 60

Query: 61  KITKRELEMLLGNYKVVEVKEELSTTQFLSRLIDIDEGIE-MQPRSWRPSLQSIPETD 118
           +ITK+ELE LL    +    EEL   + LS+LID+ +  E    RSW+PSLQSIPE +
Sbjct: 61  RITKKELEKLLCKVDM----EELPVAELLSKLIDVGDAFESTHRRSWQPSLQSIPEVN 104

[Close]

BLAST of MELO3C025368 vs. NCBI nr
Match: gi|255563885|ref|XP_002522942.1| (PREDICTED: uncharacterized protein LOC8260822 [Ricinus communis])

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-08
Identity = 39/77 (50.65%), Postives = 54/77 (70.13%), Query Frame = 1


Query: 40  IDETPRSSVAATTTTTTEVKIKITKRELEMLLGNYKVVEVKEELSTTQFLSRLIDI-DEG 99
           + E   S++++ T T+TEVKIKITK++LE LLG    V++K ELS  Q L++L+ + D  
Sbjct: 42  LGEDKGSTISSATVTSTEVKIKITKKQLEELLGR---VDMK-ELSIEQVLAQLMKVGDPS 101

Query: 100 IEMQPRSWRPSLQSIPE 116
            E   RSWRP+LQSIPE
Sbjct: 102 FETHQRSWRPNLQSIPE 114

The following BLAST results are available for this feature:

BLAST of MELO3C025368 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7M3_CUCSA	1.2e-33	70.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G076570 PE=4 SV=1	[more]
A0A0A0L2D8_CUCSA	1.4e-13	45.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G076560 PE=4 SV=1	[more]
B9SAC3_RICCO	1.7e-08	50.65	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0584600 PE=4 SV=1	[more]
M1D5Q7_SOLTU	3.0e-08	34.19	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400032292 PE=4 SV=1	[more]
B9GHW9_POPTR	3.9e-08	42.50	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s42640g PE=4 SV=1	[more]

BLAST of MELO3C025368 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126879\|ref\|XP_008463410.1\|	5.9e-58	100.00	PREDICTED: uncharacterized protein LOC103501581 [Cucumis melo]	[more]
gi\|778688380\|ref\|XP_011652736.1\|	1.7e-33	70.16	PREDICTED: uncharacterized protein LOC105435072 [Cucumis sativus]	[more]
gi\|700200987\|gb\|KGN56120.1\|	2.0e-13	45.00	hypothetical protein Csa_3G076560 [Cucumis sativus]	[more]
gi\|659126877\|ref\|XP_008463409.1\|	6.4e-12	41.53	PREDICTED: uncharacterized protein LOC103501580 [Cucumis melo]	[more]
gi\|255563885\|ref\|XP_002522942.1\|	2.5e-08	50.65	PREDICTED: uncharacterized protein LOC8260822 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU52664	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025368T1	MELO3C025368T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU52664	MU52664	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33647	FAMILY NOT NAMED	coord: 46..117 score: 3.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C025368	Csa3G076560	Cucumber (Chinese Long) v2	cumeB247
MELO3C025368	Cla005316	Watermelon (97103) v1	mewmB448
MELO3C025368	Cla97C10G189590	Watermelon (97103) v2	mewmbB426
MELO3C025368	Bhi11G000473	Wax gourd	mewgoB499
MELO3C025368	CSPI03G05060	Wild cucumber (PI 183967)	cpimeB231
MELO3C025368	Cucsa.060020	Cucumber (Gy14) v1	cgymeB048
MELO3C025368	CmaCh04G009600	Cucurbita maxima (Rimu)	cmameB693
MELO3C025368	Cp4.1LG01g08040	Cucurbita pepo (Zucchini)	cpemeB413
MELO3C025368	CsGy3G005130	Cucumber (Gy14) v2	cgybmeB201

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C025368	Cucurbita pepo (Zucchini)	cpemeB409
MELO3C025368	Bottle gourd (USVL1VR-Ls)	lsimeB370
MELO3C025368	Silver-seed gourd	carmeB0670
MELO3C025368	Silver-seed gourd	carmeB0672
MELO3C025368	Cucumber (Chinese Long) v3	cucmeB237
MELO3C025368	Cucurbita moschata (Rifu)	cmomeB283
MELO3C025368	Cucurbita moschata (Rifu)	cmomeB684
MELO3C025368	Watermelon (Charleston Gray)	mewcgB412