Cucsa.060020 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.060020
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	DUF4228 domain protein
Location	scaffold00621 : 581562 .. 582090 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAAATTTAGAGCAATTAGAAGCGTTCCCCATGGGAAACTGTGTGAGCAGCAATTGTTTATGTGGAAAACCAACAAGAATACTTAGCGATGAGGAAGCTCTAGAGATGATGAAGAGAAGAATTATGGCTTACGATGAGACTCCGAGATCTTCGAAGGCGGCAACAACAACAGAGGTGAAGATCAAGATCACAAAAAAAGAACTAGAGATGTTACTAGGTAATTATACGGTGGTGGAGGTGAAGGACGAGCTGCCCTCGGCACATTTCTTTTCGCAGCCAATCGTCGAATTGCAGCCAATCGACATCGACGATGCCTTCGAGATGCAGCCACGATCATGGCGGCCTTCCCTGCAGAGTATCCCTGAGATGGATTGAAATCCAGAGTGATTTTATCTTCTTTTTCTTTTCTTCTTCTTACTCATCTTGTTATGGTGTGGTTTTCCATGAACACTTTTGGGGATCTCTGTTTTCTCTCTCTGGTTTAATATTTGGAGTTTTTTGGTCTCCAAATTGTTTCTCTGAGACACA

mRNA sequence

GAGAAATTTAGAGCAATTAGAAGCGTTCCCCATGGGAAACTGTGTGAGCAGCAATTGTTTATGTGGAAAACCAACAAGAATACTTAGCGATGAGGAAGCTCTAGAGATGATGAAGAGAAGAATTATGGCTTACGATGAGACTCCGAGATCTTCGAAGGCGGCAACAACAACAGAGGTGAAGATCAAGATCACAAAAAAAGAACTAGAGATGTTACTAGGTAATTATACGGTGGTGGAGGTGAAGGACGAGCTGCCCTCGGCACATTTCTTTTCGCAGCCAATCGTCGAATTGCAGCCAATCGACATCGACGATGCCTTCGAGATGCAGCCACGATCATGGCGGCCTTCCCTGCAGAGTATCCCTGAGATGGATTGAAATCCAGAGTGATTTTATCTTCTTTTTCTTTTCTTCTTCTTACTCATCTTGTTATGGTGTGGTTTTCCATGAACACTTTTGGGGATCTCTGTTTTCTCTCTCTGGTTTAATATTTGGAGTTTTTTGGTCTCCAAATTGTTTCTCTGAGACACA

Coding sequence (CDS)

ATGGGAAACTGTGTGAGCAGCAATTGTTTATGTGGAAAACCAACAAGAATACTTAGCGATGAGGAAGCTCTAGAGATGATGAAGAGAAGAATTATGGCTTACGATGAGACTCCGAGATCTTCGAAGGCGGCAACAACAACAGAGGTGAAGATCAAGATCACAAAAAAAGAACTAGAGATGTTACTAGGTAATTATACGGTGGTGGAGGTGAAGGACGAGCTGCCCTCGGCACATTTCTTTTCGCAGCCAATCGTCGAATTGCAGCCAATCGACATCGACGATGCCTTCGAGATGCAGCCACGATCATGGCGGCCTTCCCTGCAGAGTATCCCTGAGATGGATTGA

Protein sequence

MGNCVSSNCLCGKPTRILSDEEALEMMKRRIMAYDETPRSSKAATTTEVKIKITKKELEMLLGNYTVVEVKDELPSAHFFSQPIVELQPIDIDDAFEMQPRSWRPSLQSIPEMD*

Homology

[Close]

BLAST of Cucsa.060020 vs. TrEMBL
Match: A0A0A0L7M3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G076570 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 6.8e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MGNCVSSNCLCGKPTRILSDEEALEMMKRRIMAYDETPRSSKAATTTEVKIKITKKELEM 60
           MGNCVSSNCLCGKPTRILSDEEALEMMKRRIMAYDETPRSSKAATTTEVKIKITKKELEM
Sbjct: 1   MGNCVSSNCLCGKPTRILSDEEALEMMKRRIMAYDETPRSSKAATTTEVKIKITKKELEM 60

Query: 61  LLGNYTVVEVKDELPSAHFFSQPIVELQPIDIDDAFEMQPRSWRPSLQSIPEMD 115
           LLGNYTVVEVKDELPSAHFFSQPIVELQPIDIDDAFEMQPRSWRPSLQSIPEMD
Sbjct: 61  LLGNYTVVEVKDELPSAHFFSQPIVELQPIDIDDAFEMQPRSWRPSLQSIPEMD 114

[Close]

BLAST of Cucsa.060020 vs. TrEMBL
Match: A0A0A0L2D8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G076560 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-11
Identity = 49/115 (42.61%), Postives = 64/115 (55.65%), Query Frame = 1


Query: 1   MGNCVSSNCLCGKPTRILSDEEALEMMKRRIMAYDETPRSSKAATTTEVKIKITKKELEM 60
           MGNC S+  L      +  D+E +E M RR +      +   A+TTTE+KI+ITK+ELE 
Sbjct: 1   MGNCTSNKYLAETIVPMSDDDEEVEEMLRRRLVVKNGAQKCSASTTTELKIRITKRELEK 60

Query: 61  LLGNYTVVEVKDELPSAHFFSQPIVELQPIDIDDAFE-MQPRSWRPSLQSIPEMD 115
           LL    V    +ELP     S      + ID+ D FE    RSWRPSLQSIPE++
Sbjct: 61  LLCKVDV----EELPVTELLS------KLIDVGDTFESTHQRSWRPSLQSIPEVN 105

[Close]

BLAST of Cucsa.060020 vs. TrEMBL
Match: F6HEJ8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0090g00360 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.5e-07
Identity = 37/101 (36.63%), Postives = 61/101 (60.40%), Query Frame = 1


Query: 18  LSDEEALEMMKRRIM----AYDETPRSSKAATTTEVKIKITKKELEMLLGNYTVVEVKDE 77
           +S ++A++  K  ++     +  +  SS ++TTTEVK+KI+KK+LE LLG   V  +   
Sbjct: 35  ISSDKAMKGEKDSLLKENPGFSSSSSSSSSSTTTEVKVKISKKQLEELLGKVDVQGL--- 94

Query: 78  LPSAHFFSQPIVELQPIDIDDAFEMQPRSWRPSLQSIPEMD 115
             + H   Q +     +++ D FE + RSWRP+LQSIPE++
Sbjct: 95  --TVHQVLQHL-----MNVSDRFETEQRSWRPALQSIPEVN 125

[Close]

BLAST of Cucsa.060020 vs. TrEMBL
Match: B9SAC3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0584600 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.1e-07
Identity = 47/123 (38.21%), Postives = 61/123 (49.59%), Query Frame = 1


Query: 1   MGNCVSSNCLC-------GKPT---RILSDEEALEMMKRRIMAYDE-TPRSSKAATTTEV 60
           MGNC+             G P    R  S     E  K  ++  D+ +  SS   T+TEV
Sbjct: 1   MGNCLRRESSMQWGGDDWGSPLPDDRFFSSNTRQEEEKGLLLGEDKGSTISSATVTSTEV 60

Query: 61  KIKITKKELEMLLGNYTVVEVKDELPSAHFFSQPIVELQPIDIDDAFEMQPRSWRPSLQS 113
           KIKITKK+LE LLG   + E+  E        Q + +L  +  D +FE   RSWRP+LQS
Sbjct: 61  KIKITKKQLEELLGRVDMKELSIE--------QVLAQLMKVG-DPSFETHQRSWRPNLQS 114

[Close]

BLAST of Cucsa.060020 vs. TrEMBL
Match: G7IXN1_MEDTR (DUF4228 domain protein OS=Medicago truncatula GN=MTR_3g051530 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.6e-06
Identity = 42/116 (36.21%), Postives = 62/116 (53.45%), Query Frame = 1


Query: 1   MGNCVSSNCLCGKPTRILSDEEALEMMKRRIMAYDETPRSSKAA--TTTEVKIKITKKEL 60
           MGNC+ +        +  +D++  +         D T +S+ AA  TTTEVKIKITKK+L
Sbjct: 1   MGNCLKNQ----SSIKYATDDDEWDFQASE---GDYTSKSNGAAAKTTTEVKIKITKKQL 60

Query: 61  EMLLGNYTVVEVKDELPSAHFFSQPIVELQPIDIDDAFEMQPRSWRPSLQSIPEMD 115
           E LL    + E++ E           V  Q ++  + ++   RSWRP+LQSIPE+D
Sbjct: 61  EELLSKVDIRELRVEQ----------VLAQLMNHSNGYQSLQRSWRPALQSIPEVD 99

[Close]

BLAST of Cucsa.060020 vs. NCBI nr
Match: gi|778688380|ref|XP_011652736.1| (PREDICTED: uncharacterized protein LOC105435072 [Cucumis sativus])

HSP 1 Score: 231.1 bits (588), Expect = 9.8e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MGNCVSSNCLCGKPTRILSDEEALEMMKRRIMAYDETPRSSKAATTTEVKIKITKKELEM 60
           MGNCVSSNCLCGKPTRILSDEEALEMMKRRIMAYDETPRSSKAATTTEVKIKITKKELEM
Sbjct: 1   MGNCVSSNCLCGKPTRILSDEEALEMMKRRIMAYDETPRSSKAATTTEVKIKITKKELEM 60

Query: 61  LLGNYTVVEVKDELPSAHFFSQPIVELQPIDIDDAFEMQPRSWRPSLQSIPEMD 115
           LLGNYTVVEVKDELPSAHFFSQPIVELQPIDIDDAFEMQPRSWRPSLQSIPEMD
Sbjct: 61  LLGNYTVVEVKDELPSAHFFSQPIVELQPIDIDDAFEMQPRSWRPSLQSIPEMD 114

[Close]

BLAST of Cucsa.060020 vs. NCBI nr
Match: gi|659126879|ref|XP_008463410.1| (PREDICTED: uncharacterized protein LOC103501581 [Cucumis melo])

HSP 1 Score: 150.6 bits (379), Expect = 1.7e-33
Identity = 87/124 (70.16%), Postives = 93/124 (75.00%), Query Frame = 1


Query: 1   MGNCVSSNCLCGKPTRILSDEEALEMMKRRIMAY-------DETPRSSKAA---TTTEVK 60
           MGNCVSS  LCGK TRI SDEEALEMMKR +MAY       DETPRSS AA   TTTEVK
Sbjct: 1   MGNCVSSKYLCGKSTRI-SDEEALEMMKRTVMAYNDETPKIDETPRSSVAATTTTTTEVK 60

Query: 61  IKITKKELEMLLGNYTVVEVKDELPSAHFFSQPIVELQPIDIDDAFEMQPRSWRPSLQSI 115
           IKITK+ELEMLLGNY VVEVK+EL +  F S      + IDID+  EMQPRSWRPSLQSI
Sbjct: 61  IKITKRELEMLLGNYKVVEVKEELSTTQFLS------RLIDIDEGIEMQPRSWRPSLQSI 117

[Close]

BLAST of Cucsa.060020 vs. NCBI nr
Match: gi|659126877|ref|XP_008463409.1| (PREDICTED: uncharacterized protein LOC103501580 [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-11
Identity = 51/115 (44.35%), Postives = 68/115 (59.13%), Query Frame = 1


Query: 1   MGNCVSSNCLCGKPTRILSDEEALEMMKRRIMAYDETPRSSKAATTTEVKIKITKKELEM 60
           MGNC S+  L  +   +  DEE +E M RR +  +   +   A+TTTE+KI+ITKKELE 
Sbjct: 1   MGNCTSNKYLA-ETMPMSDDEEEVEEMLRRRLVVESRAQKCSASTTTELKIRITKKELEK 60

Query: 61  LLGNYTVVEVKDELPSAHFFSQPIVELQPIDIDDAFE-MQPRSWRPSLQSIPEMD 115
           LL    +    +ELP A   S      + ID+ DAFE    RSW+PSLQSIPE++
Sbjct: 61  LLCKVDM----EELPVAELLS------KLIDVGDAFESTHRRSWQPSLQSIPEVN 104

[Close]

BLAST of Cucsa.060020 vs. NCBI nr
Match: gi|700200987|gb|KGN56120.1| (hypothetical protein Csa_3G076560 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-11
Identity = 49/115 (42.61%), Postives = 64/115 (55.65%), Query Frame = 1


Query: 1   MGNCVSSNCLCGKPTRILSDEEALEMMKRRIMAYDETPRSSKAATTTEVKIKITKKELEM 60
           MGNC S+  L      +  D+E +E M RR +      +   A+TTTE+KI+ITK+ELE 
Sbjct: 1   MGNCTSNKYLAETIVPMSDDDEEVEEMLRRRLVVKNGAQKCSASTTTELKIRITKRELEK 60

Query: 61  LLGNYTVVEVKDELPSAHFFSQPIVELQPIDIDDAFE-MQPRSWRPSLQSIPEMD 115
           LL    V    +ELP     S      + ID+ D FE    RSWRPSLQSIPE++
Sbjct: 61  LLCKVDV----EELPVTELLS------KLIDVGDTFESTHQRSWRPSLQSIPEVN 105

[Close]

BLAST of Cucsa.060020 vs. NCBI nr
Match: gi|225460987|ref|XP_002278220.1| (PREDICTED: uncharacterized protein LOC100260689 [Vitis vinifera])

HSP 1 Score: 62.0 bits (149), Expect = 7.8e-07
Identity = 37/101 (36.63%), Postives = 61/101 (60.40%), Query Frame = 1


Query: 18  LSDEEALEMMKRRIM----AYDETPRSSKAATTTEVKIKITKKELEMLLGNYTVVEVKDE 77
           +S ++A++  K  ++     +  +  SS ++TTTEVK+KI+KK+LE LLG   V  +   
Sbjct: 35  ISSDKAMKGEKDSLLKENPGFSSSSSSSSSSTTTEVKVKISKKQLEELLGKVDVQGL--- 94

Query: 78  LPSAHFFSQPIVELQPIDIDDAFEMQPRSWRPSLQSIPEMD 115
             + H   Q +     +++ D FE + RSWRP+LQSIPE++
Sbjct: 95  --TVHQVLQHL-----MNVSDRFETEQRSWRPALQSIPEVN 125

The following BLAST results are available for this feature:

BLAST of Cucsa.060020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7M3_CUCSA	6.8e-58	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G076570 PE=4 SV=1	[more]
A0A0A0L2D8_CUCSA	1.6e-11	42.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G076560 PE=4 SV=1	[more]
F6HEJ8_VITVI	5.5e-07	36.63	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0090g00360 PE=4 SV=...	[more]
B9SAC3_RICCO	7.1e-07	38.21	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0584600 PE=4 SV=1	[more]
G7IXN1_MEDTR	4.6e-06	36.21	DUF4228 domain protein OS=Medicago truncatula GN=MTR_3g051530 PE=4 SV=1	[more]

BLAST of Cucsa.060020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778688380\|ref\|XP_011652736.1\|	9.8e-58	100.00	PREDICTED: uncharacterized protein LOC105435072 [Cucumis sativus]	[more]
gi\|659126879\|ref\|XP_008463410.1\|	1.7e-33	70.16	PREDICTED: uncharacterized protein LOC103501581 [Cucumis melo]	[more]
gi\|659126877\|ref\|XP_008463409.1\|	1.1e-11	44.35	PREDICTED: uncharacterized protein LOC103501580 [Cucumis melo]	[more]
gi\|700200987\|gb\|KGN56120.1\|	2.4e-11	42.61	hypothetical protein Csa_3G076560 [Cucumis sativus]	[more]
gi\|225460987\|ref\|XP_002278220.1\|	7.8e-07	36.63	PREDICTED: uncharacterized protein LOC100260689 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.060020.1	Cucsa.060020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33647	FAMILY NOT NAMED	coord: 25..114 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.060020	Cla005317	Watermelon (97103) v1	cgywmB048
Cucsa.060020	Csa3G076570	Cucumber (Chinese Long) v2	cgycuB044
Cucsa.060020	MELO3C025368	Melon (DHL92) v3.5.1	cgymeB048
Cucsa.060020	ClCG10G005340	Watermelon (Charleston Gray)	cgywcgB049
Cucsa.060020	CSPI03G05060	Wild cucumber (PI 183967)	cgycpiB044
Cucsa.060020	CmaCh04G009600	Cucurbita maxima (Rimu)	cgycmaB0081
Cucsa.060020	Lsi05G005880	Bottle gourd (USVL1VR-Ls)	cgylsiB048
Cucsa.060020	Cp4.1LG01g08040	Cucurbita pepo (Zucchini)	cgycpeB0077
Cucsa.060020	MELO3C025368.2	Melon (DHL92) v3.6.1	cgymedB047
Cucsa.060020	CsaV3_3G005050	Cucumber (Chinese Long) v3	cgycucB046
Cucsa.060020	Cla97C10G189590	Watermelon (97103) v2	cgywmbB048
Cucsa.060020	Bhi11G000471	Wax gourd	cgywgoB049
Cucsa.060020	Carg00075	Silver-seed gourd	carcgyB0738

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.060020	Cucurbita maxima (Rimu)	cgycmaB0080
Cucsa.060020	Cucurbita moschata (Rifu)	cgycmoB0075
Cucsa.060020	Cucurbita moschata (Rifu)	cgycmoB0076