CsaV3_3G005050 (gene) Cucumber (Chinese Long) v3

NameCsaV3_3G005050
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionDUF4228 domain-containing protein
Locationchr3 : 4221605 .. 4225632 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAATTGTACAAGCAACAAATATTTGGCAGAGACAATAGTGCCGATGAGCGATGACGACGAAGAAGTGGAGGAGATGCTGAGAAGGAGGCTAGTTGTCAAAAACGGAGCTCAGAAATGTTCAGCGAGTACCACGACGGAGTTGAAGATTAGGATCACAAAGAGAGAGCTGGAGAAGTTGTTGTGCAAAGTGGATGTGGAGGAGTTGCCAGTGACGGAGCTGTTATCCAAGTTAATCGATGTTGGCGATACATTCGAGAGTACCCATCAGCGATCATGGCGGCCTTCTTTGCAAAGTATTCCTGAAGTGAATTGAACAACATATATGTTAAATATTGTAAATATTGGATGTAGACAGGGGGAGTATTTTGAACCTACTTAGGACTATGATTGTTTTAAAGAGGTTTGATATATGACCACTTGAGTTGAATTATGCTCAGGTTGGGTTGAGAGATATAAGTATATACGTTTTAGTTTTCTCGATTTTATAGTTTTATATAAAAAAAAGAAGCGAAAATCGGAATTGCCATAAAAGAAGATATAGTCAAATAATGTTTTAGCTTGTTAGTTAAGCACAATTATATATCTGATATCATGATATTTGTAATAAACAATGTTGTATTAACAAGATGAAAAGAGGGGCTATTTGGAATATAGAGTTGGATATGATAATGTGTGAGTTAAAATATATTTTAGTGTGTATTTGAAATACAAAACTTTTTTTTGATTAGTCTTAGATAATTAATTGTGCTTAGCTGAAATTGATCGTTAGGTGATATCAGTAAAGAGAGAATAAAGATGTTATTTAAACCGTTGAATTGTATAACGGTCGTGTTTAGTGTTAAAATAATACACTTAATTACCATATATTTTAGCCTTATTCAACTCATTCTATGATGAGAAAATACCGTGTATTAAAAAAAAAAATGATTAATGTTAGAAACGGGTGTTGAATTAATTAGATTTTTTATTTTAAATAATTGTTAATTTTTGTTTCCAAAATTTATAGTTCAAGGAGTTTTTCACGAGCATTCGAATCAATAGAAATTCTAATGATTTTTTTTTTTTGGAGTTAGGGAGTTGTTTGTTAGGAGTTGAGTATCAAAACACTTAGTGCAACTGAAGCACGCACTTCTCATAAAATAAAATTCAATGTCACATGCTTTCTTAAACTTTTATTATTCTGATTAACATTTTTGTTGTTAATTTGTTTAACTTTGGTATTTCTGCTTAATTAGCTTTAAACAACCTTATTATTATTAATTTTTCTAAGACTTTGTGAATGTAAATACCTTTGCTTACATTTCCCAATTGAATCCTTGTGTTGAATTGATCACCTAAAACAAGATGGCTGGAAAACTTTGTCTAACTAAAAACTTGCATCAAACAAATCAAAAGAAAAGAAAAGGTTTACAATCAATGAAGGCACATACCTTGCATTCAAAACTTCCTTGTATGTGATTTTTTGAGCTCACCCTAGGCTCCTTATAGTGTGTTTCTTGAGCTTGCTCTCAACCCTCCTCCATACATCATTCATTTAAGTTGCATTTAGACTCCACAATTGAGTTTTCTAAGCTACCTCTTATTAAACTTTTATCTCTCTAGATGAACTCTCGATCTCAAGTTATCTCCTTGAATCTACAAGTTGATGTCACAACCAATGCACCTAGTCTTCATTTGACAACAATAATAATTGTTTTTATAAGGAAAGAGAGTGACCTGCAAAAATAAGATCACCTGGACACATGCACATGTGATGCTTTCCCACAGAAATTTTGAGTCTTAAACCCTAAAATAAATAAGGGGATAGTTGCAAATTTAGCCATTAGATGCAAAATAATTAAGTATATAGCAACATTTTTAAAAAATTGCAAATATAGCAAAATTTATCAAATTTTATCAATGATAGAAATCTATCACCGATAGACCATATTGTAAATATTGATATATTATTGATAGATCATACAAATCTATCAGTGATACAAGTCTATCAGCGATAGTCTTGCTATATTTGCAATTTCTTTTAAATGTTTCTATATTCTTAATTATTATTCCTAAAATGACCATCAATTATAATTATCCAGTAATTGTGTTTATATGAGTGTTCGAATTAGATTGTTCCAGTAAGGTTTTAGAGTAACATATGGTATAGATCTTCATCCTACCAAGTAGAAGGATGTGCCCTGCCATATCATGATTGGCTAGGGTTGTCACGTCCAAGCACTATCTCGGTTCATTTTGGTCCTAGGGTGATTCTTTTGGTTGGAAATACAGAAATATGCCTCATTAGTTATTTTGTAATTAGGTTCAACTAAGGTTGAGCATGTTGATTACTGCCCTACTTGAGTTTATCCTCCTCTCCAGAGTCTAAATTGGACATGAGGTGCAATTTTTTAGTCTAAATAACATTATTATCTTCTTTATTTTGGTCGATTTTAAGTTGTATTCTTACTTTACATCGAATATACCCTCTAATCCAAAAAGACAACTCATAACAGAGACCAACGTAAATAAAAAAAAAAAGGGTCTCATCACTTTCACTCTTCATTTTGGAATTGGGTGTGAAAATATGAACGAAAAACGAATAGGGGAAACAAAGTACTATAAATGATGACATGAGTTAGATGAGTTTTTGGTAAATCAAACTGTTTCTGATTAGCCATATTGCAGCTACTCAATTTTTATTCCAAGTGGACCAATTAATGAAATTAATTATTCAACTATATATATTATTTTGCAATTCCTTCAAATTTGGAACTTTGTGACATTTTCAAATAACAAAGGCTTATCCTCATGGAGGGTTGGTATGAAAAAGCTTACTTTTAATTTGGACTTCAACAACCCCTTTTAAAGAAGCAAAACATTTCATAAACAAACAAAATATATATTTGTATATATATATATATCACTAAACGTTATTGGCTAGAAAATAAGAGTTAACAAAGGAAATGACTTTTTCATTTTAATTGTAGTGAATGACATCAAAGTTAGCAACCATGTTTGAAAATTGTGAAGTAACAGCAGCCAAAATGTGAAAACCTTTATTATTATTTTCTTGGGTCAATTAGTGGTTAAGTTCACACTACATAATATTCATGTGGTTGAAGATTATTCTCCCTTTTATTACAATCACTCATCAATTGTCCCTTTCTCACAACTTGAATGTTGAATATAAATTTGACCTTTAAGAGTGGTTGGTCGTAGTCTTTTTGTAGGCTTAAATTTTGTGTTGAAGTAACTATTTCACTTCTGTTTTCACGTCATGACAACAATAGTAAGAGGTTCACGAACAATGTCGTCCTGTAGGGATGAGATTCACACAGATGGAGTAAACAAAACCATGTAGCCCCCCACTGGTTAGGAATATGAAGTCTTTATTGACTCGAGAAAGAAAGAGCAGATCTAAAAATTTATGAACAATTTTTTTTATGAACCGACATATATTTATATAAATATAGCAAATCACATAGTCTATTAGTGATAAAAGAATGAGATTTTGTTATATTTGAAAATATTTTATCTATTTTGCATCAAAAACAACTGCCCTAACTTCCATTCATGACCCTCCAACCTTTATTTACTTTTATCATTTTGTTTAAGTACTTAGATCATGTTTCATCGTGATTTCAAAAATAGTTACAATTACTTCTTCTTTTTTTGTTATTTTTGAAATTTTTGTTAAACATGTTTTTAATTAAAAAAAAAACCAATTATAATGATATGAGAATTATATCCAAAATGTAAAATTCTTTTTAACAAAATCACTATCATGTATTAAGATGCATTGCAAATTGCATCATTTTTATGCAAACCTACTCAAGTGTTTATTCATAAGTTGTCGCAGAGAAATTTTAAAAAAAATGAAAAGAAAGAAAGAATATTTTCCCTACGTTGAAGAAGGGATGTATATACGAAGATAAATACAACTTTACATGCATCAAAATAAATATATATATATTTTTATTTATTTTGGATAATTAAAACAGATAACTTTTATCTTTTTAAGATTTAATAGTAAAAGTATAG

mRNA sequence

ATGGGAAATTGTACAAGCAACAAATATTTGGCAGAGACAATAGTGCCGATGAGCGATGACGACGAAGAAGTGGAGGAGATGCTGAGAAGGAGGCTAGTTGTCAAAAACGGAGCTCAGAAATGTTCAGCGAGTACCACGACGGAGTTGAAGATTAGGATCACAAAGAGAGAGCTGGAGAAGTTGTTGTGCAAAGTGGATGTGGAGGAGTTGCCAGTGACGGAGCTGTTATCCAAGTTAATCGATGTTGGCGATACATTCGAGAGTACCCATCAGCGATCATGGCGGCCTTCTTTGCAAATAAAAGTATAG

Coding sequence (CDS)

ATGGGAAATTGTACAAGCAACAAATATTTGGCAGAGACAATAGTGCCGATGAGCGATGACGACGAAGAAGTGGAGGAGATGCTGAGAAGGAGGCTAGTTGTCAAAAACGGAGCTCAGAAATGTTCAGCGAGTACCACGACGGAGTTGAAGATTAGGATCACAAAGAGAGAGCTGGAGAAGTTGTTGTGCAAAGTGGATGTGGAGGAGTTGCCAGTGACGGAGCTGTTATCCAAGTTAATCGATGTTGGCGATACATTCGAGAGTACCCATCAGCGATCATGGCGGCCTTCTTTGCAAATAAAAGTATAG

Protein sequence

MGNCTSNKYLAETIVPMSDDDEEVEEMLRRRLVVKNGAQKCSASTTTELKIRITKRELEKLLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQIKV
BLAST of CsaV3_3G005050 vs. NCBI nr
Match: KGN56120.1 (hypothetical protein Csa_3G076560 [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 7.4e-29
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0

Query: 1   MGNCTSNKYLAETIVPMSXXXXXXXXXXXXXXXXXXXXXXXXXXXTTELKIRITKRELEK 60
           MGNCTSNKYLAETIVPMSXXXXXXXXXXXXXXXXXXXXXXXXXXXTTELKIRITKRELEK
Sbjct: 1   MGNCTSNKYLAETIVPMSXXXXXXXXXXXXXXXXXXXXXXXXXXXTTELKIRITKRELEK 60

Query: 61  LLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQ 100
           LLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQ
Sbjct: 61  LLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQ 99

BLAST of CsaV3_3G005050 vs. NCBI nr
Match: XP_008463409.1 (PREDICTED: uncharacterized protein LOC103501580 [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 7.2e-24
Identity = 79/99 (79.80%), Postives = 84/99 (84.85%), Query Frame = 0

Query: 1   MGNCTSNKYLAETIVPMSXXXXXXXXXXXXXXXXXXXXXXXXXXXTTELKIRITKRELEK 60
           MGNCTSNKYLAET +PMS XXXXXXXXXXXXXXX           TTELKIRITK+ELEK
Sbjct: 1   MGNCTSNKYLAET-MPMSDXXXXXXXXXXXXXXXESRAQKCSASTTTELKIRITKKELEK 60

Query: 61  LLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQ 100
           LLCKVD+EELPV ELLSKLIDVGD FESTH+RSW+PSLQ
Sbjct: 61  LLCKVDMEELPVAELLSKLIDVGDAFESTHRRSWQPSLQ 98

BLAST of CsaV3_3G005050 vs. NCBI nr
Match: XP_022151029.1 (uncharacterized protein LOC111019048 [Momordica charantia])

HSP 1 Score: 108.2 bits (269), Expect = 1.7e-20
Identity = 64/102 (62.75%), Postives = 67/102 (65.69%), Query Frame = 0

Query: 1   MGNCTSNKYLAETIVPMS---XXXXXXXXXXXXXXXXXXXXXXXXXXXTTELKIRITKRE 60
           MGNCTSNKY AE I PMS                              TTE+KIRITKRE
Sbjct: 1   MGNCTSNKYSAE-ISPMSDEEEAVETVKRRLIPDDDGHGALRSSSLARTTEVKIRITKRE 60

Query: 61  LEKLLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQ 100
           LEKLL KVDVEELPVTELLS+LIDVGD FESTH+RSWRPSLQ
Sbjct: 61  LEKLLRKVDVEELPVTELLSQLIDVGDAFESTHRRSWRPSLQ 101

BLAST of CsaV3_3G005050 vs. NCBI nr
Match: XP_022932152.1 (uncharacterized protein LOC111438472 [Cucurbita moschata])

HSP 1 Score: 103.6 bits (257), Expect = 4.1e-19
Identity = 59/99 (59.60%), Postives = 67/99 (67.68%), Query Frame = 0

Query: 1   MGNCTSNKYLAETIVPMSXXXXXXXXXXXXXXXXXXXXXXXXXXXTTELKIRITKRELEK 60
           MGNCTSNKYLAET +PMS                           TTE+KIR+TKRELEK
Sbjct: 1   MGNCTSNKYLAET-MPMS---EEEEVVETVKRKLNADDGASRGTTTTEVKIRMTKRELEK 60

Query: 61  LLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQ 100
           LL KV+VEELPVTELL ++I+VGD  ESTH+RSWRPSLQ
Sbjct: 61  LLSKVEVEELPVTELLLQMIEVGDESESTHRRSWRPSLQ 95

BLAST of CsaV3_3G005050 vs. NCBI nr
Match: XP_022985276.1 (uncharacterized protein LOC111483315 [Cucurbita maxima])

HSP 1 Score: 99.0 bits (245), Expect = 1.0e-17
Identity = 61/101 (60.40%), Postives = 68/101 (67.33%), Query Frame = 0

Query: 1   MGNCTSNKYLAETIVPMS--XXXXXXXXXXXXXXXXXXXXXXXXXXXTTELKIRITKREL 60
           MGNCTSNKYLAET +PMS                          XXX  E+KIR+TKREL
Sbjct: 1   MGNCTSNKYLAET-MPMSEEEELVETLKRKLNADDGASRSSRGTXXXXXEVKIRMTKREL 60

Query: 61  EKLLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQ 100
           EKLL KV+VEELPVTELL +LI+VGD  ESTH+RSWRPSLQ
Sbjct: 61  EKLLSKVEVEELPVTELLLQLIEVGDESESTHRRSWRPSLQ 100

BLAST of CsaV3_3G005050 vs. TAIR10
Match: AT4G21920.1 (unknown protein)

HSP 1 Score: 43.5 bits (101), Expect = 9.1e-05
Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 0

Query: 48  ELKIRITKRELEKLLCKVDVEELPVTELLSKLI-DVGDTF------ESTHQRSWRPSLQ 100
           E+KIRITK+ELE L+  + ++ L   E+LSKLI + GD         + H + W+P LQ
Sbjct: 65  EIKIRITKKELEDLMRNIGLKSLTAEEILSKLIFEGGDQIGFSAVDVTNHHQPWKPVLQ 123

BLAST of CsaV3_3G005050 vs. TrEMBL
Match: tr|A0A0A0L2D8|A0A0A0L2D8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G076560 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.9e-29
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0

Query: 1   MGNCTSNKYLAETIVPMSXXXXXXXXXXXXXXXXXXXXXXXXXXXTTELKIRITKRELEK 60
           MGNCTSNKYLAETIVPMSXXXXXXXXXXXXXXXXXXXXXXXXXXXTTELKIRITKRELEK
Sbjct: 1   MGNCTSNKYLAETIVPMSXXXXXXXXXXXXXXXXXXXXXXXXXXXTTELKIRITKRELEK 60

Query: 61  LLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQ 100
           LLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQ
Sbjct: 61  LLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQ 99

BLAST of CsaV3_3G005050 vs. TrEMBL
Match: tr|A0A1S3CJ77|A0A1S3CJ77_CUCME (uncharacterized protein LOC103501580 OS=Cucumis melo OX=3656 GN=LOC103501580 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.8e-24
Identity = 79/99 (79.80%), Postives = 84/99 (84.85%), Query Frame = 0

Query: 1   MGNCTSNKYLAETIVPMSXXXXXXXXXXXXXXXXXXXXXXXXXXXTTELKIRITKRELEK 60
           MGNCTSNKYLAET +PMS XXXXXXXXXXXXXXX           TTELKIRITK+ELEK
Sbjct: 1   MGNCTSNKYLAET-MPMSDXXXXXXXXXXXXXXXESRAQKCSASTTTELKIRITKKELEK 60

Query: 61  LLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQ 100
           LLCKVD+EELPV ELLSKLIDVGD FESTH+RSW+PSLQ
Sbjct: 61  LLCKVDMEELPVAELLSKLIDVGDAFESTHRRSWQPSLQ 98

BLAST of CsaV3_3G005050 vs. TrEMBL
Match: tr|B9SAC3|B9SAC3_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0584600 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.8e-08
Identity = 30/54 (55.56%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 46  TTELKIRITKRELEKLLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQ 100
           +TE+KI+ITK++LE+LL +VD++EL + ++L++L+ VGD    THQRSWRP+LQ
Sbjct: 57  STEVKIKITKKQLEELLGRVDMKELSIEQVLAQLMKVGDPSFETHQRSWRPNLQ 110

BLAST of CsaV3_3G005050 vs. TrEMBL
Match: tr|A0A0D2U1A6|A0A0D2U1A6_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G438000 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.3e-08
Identity = 29/52 (55.77%), Postives = 46/52 (88.46%), Query Frame = 0

Query: 48  ELKIRITKRELEKLLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQ 100
           E+K++ITK++LE+LL +VDV+EL V ++L++LI+V + F+ T+QRSWRP+LQ
Sbjct: 62  EVKVKITKKQLEELLGRVDVKELSVQQVLAQLINVSNQFDETNQRSWRPALQ 113

BLAST of CsaV3_3G005050 vs. TrEMBL
Match: tr|A0A2I4EY00|A0A2I4EY00_9ROSI (uncharacterized protein LOC108993715 OS=Juglans regia OX=51240 GN=LOC108993715 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.2e-08
Identity = 31/53 (58.49%), Postives = 47/53 (88.68%), Query Frame = 0

Query: 47  TELKIRITKRELEKLLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQ 100
           TE+KI+IT+++LE+LL +VDV+EL V ++L++L++V D +E THQRSWRP+LQ
Sbjct: 73  TEVKIKITRKQLEELLGRVDVKELSVHQVLAQLMNVSDRYE-THQRSWRPALQ 124

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN56120.17.4e-29100.00hypothetical protein Csa_3G076560 [Cucumis sativus][more]
XP_008463409.17.2e-2479.80PREDICTED: uncharacterized protein LOC103501580 [Cucumis melo][more]
XP_022151029.11.7e-2062.75uncharacterized protein LOC111019048 [Momordica charantia][more]
XP_022932152.14.1e-1959.60uncharacterized protein LOC111438472 [Cucurbita moschata][more]
XP_022985276.11.0e-1760.40uncharacterized protein LOC111483315 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT4G21920.19.1e-0542.37unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0L2D8|A0A0A0L2D8_CUCSA4.9e-29100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G076560 PE=4 SV=1[more]
tr|A0A1S3CJ77|A0A1S3CJ77_CUCME4.8e-2479.80uncharacterized protein LOC103501580 OS=Cucumis melo OX=3656 GN=LOC103501580 PE=... [more]
tr|B9SAC3|B9SAC3_RICCO2.8e-0855.56Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0584600 PE=4 SV=1[more]
tr|A0A0D2U1A6|A0A0D2U1A6_GOSRA6.3e-0855.77Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G438000 PE=4 ... [more]
tr|A0A2I4EY00|A0A2I4EY00_9ROSI8.2e-0858.49uncharacterized protein LOC108993715 OS=Juglans regia OX=51240 GN=LOC108993715 P... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G005050.1CsaV3_3G005050.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33647:SF5SUBFAMILY NOT NAMEDcoord: 1..99
NoneNo IPR availablePANTHERPTHR33647FAMILY NOT NAMEDcoord: 1..99

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G005050Watermelon (Charleston Gray)cucwcgB219
CsaV3_3G005050Cucurbita moschata (Rifu)cmocucB0822
CsaV3_3G005050Cucurbita pepo (Zucchini)cpecucB0256