CmaCh16G008680 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G008680
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr16 : 5239744 .. 5240064 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAATTGTACAAGCAACAAATATTTGGCAGAGACAATGCCGATGAGTGAGGAGGAGGAACTGGTGGAGACGTTGAAGAGGAAGCTGAATGCCGATGACGGTGCTTCGAGATCTTCGAGAGGGACGACGACGACGACGACGGAGGTGAAGATTAGGATGACAAAGAGAGAGCTGGAGAAGTTATTGAGCAAAGTGGAAGTGGAGGAGCTGCCAGTGACGGAGCTGTTATTGCAGTTGATTGAGGTTGGGGATGAGTCGGAGAGTACTCATCGGCGATCATGGCGACCATCTTTGCAAAGCATTCCTGAGCTGTGCTGA

mRNA sequence

ATGGGAAATTGTACAAGCAACAAATATTTGGCAGAGACAATGCCGATGAGTGAGGAGGAGGAACTGGTGGAGACGTTGAAGAGGAAGCTGAATGCCGATGACGGTGCTTCGAGATCTTCGAGAGGGACGACGACGACGACGACGGAGGTGAAGATTAGGATGACAAAGAGAGAGCTGGAGAAGTTATTGAGCAAAGTGGAAGTGGAGGAGCTGCCAGTGACGGAGCTGTTATTGCAGTTGATTGAGGTTGGGGATGAGTCGGAGAGTACTCATCGGCGATCATGGCGACCATCTTTGCAAAGCATTCCTGAGCTGTGCTGA

Coding sequence (CDS)

ATGGGAAATTGTACAAGCAACAAATATTTGGCAGAGACAATGCCGATGAGTGAGGAGGAGGAACTGGTGGAGACGTTGAAGAGGAAGCTGAATGCCGATGACGGTGCTTCGAGATCTTCGAGAGGGACGACGACGACGACGACGGAGGTGAAGATTAGGATGACAAAGAGAGAGCTGGAGAAGTTATTGAGCAAAGTGGAAGTGGAGGAGCTGCCAGTGACGGAGCTGTTATTGCAGTTGATTGAGGTTGGGGATGAGTCGGAGAGTACTCATCGGCGATCATGGCGACCATCTTTGCAAAGCATTCCTGAGCTGTGCTGA

Protein sequence

MGNCTSNKYLAETMPMSEEEELVETLKRKLNADDGASRSSRGTTTTTTEVKIRMTKRELEKLLSKVEVEELPVTELLLQLIEVGDESESTHRRSWRPSLQSIPELC

Homology

[Close]

BLAST of CmaCh16G008680 vs. TrEMBL
Match: A0A0A0L2D8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G076560 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-27
Identity = 74/107 (69.16%), Postives = 90/107 (84.11%), Query Frame = 1


Query: 1   MGNCTSNKYLAETM-PMSEE-EELVETLKRKLNADDGASRSSRGTTTTTTEVKIRMTKRE 60
           MGNCTSNKYLAET+ PMS++ EE+ E L+R+L   +GA + S    +TTTE+KIR+TKRE
Sbjct: 1   MGNCTSNKYLAETIVPMSDDDEEVEEMLRRRLVVKNGAQKCS---ASTTTELKIRITKRE 60

Query: 61  LEKLLSKVEVEELPVTELLLQLIEVGDESESTHRRSWRPSLQSIPEL 106
           LEKLL KV+VEELPVTELL +LI+VGD  ESTH+RSWRPSLQSIPE+
Sbjct: 61  LEKLLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQSIPEV 104

[Close]

BLAST of CmaCh16G008680 vs. TrEMBL
Match: B9SAC3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0584600 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.8e-12
Identity = 44/98 (44.90%), Postives = 69/98 (70.41%), Query Frame = 1


Query: 7   NKYLAETMPMSEEEELVETLKRKLNADDGASRSSRGTTTTTTEVKIRMTKRELEKLLSKV 66
           +++ +      EE+ L+      L  D G++ SS   T T+TEVKI++TK++LE+LL +V
Sbjct: 25  DRFFSSNTRQEEEKGLL------LGEDKGSTISS--ATVTSTEVKIKITKKQLEELLGRV 84

Query: 67  EVEELPVTELLLQLIEVGDESESTHRRSWRPSLQSIPE 105
           +++EL + ++L QL++VGD S  TH+RSWRP+LQSIPE
Sbjct: 85  DMKELSIEQVLAQLMKVGDPSFETHQRSWRPNLQSIPE 114

[Close]

BLAST of CmaCh16G008680 vs. TrEMBL
Match: B9SAC5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0584620 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.4e-10
Identity = 38/93 (40.86%), Postives = 64/93 (68.82%), Query Frame = 1


Query: 12  ETMPMSEEEELVETLKRKLNADDGASRSSRGTTTTTTEVKIRMTKRELEKLLSKVEVEEL 71
           E +   EE+ L+    +       ++ ++  TT++  E+KI++TK++LE+LL +V++ EL
Sbjct: 38  ENITNIEEKGLLIGDNKGTTISPTSAAAAGATTSSCRELKIKITKKQLEELLGRVDMNEL 97

Query: 72  PVTELLLQLIEVGDESESTHRRSWRPSLQSIPE 105
            + ++L+QL++V D S  THRRSWRP+LQSIPE
Sbjct: 98  SIEQVLVQLVKVSDSSFETHRRSWRPNLQSIPE 130

[Close]

BLAST of CmaCh16G008680 vs. TrEMBL
Match: W9R0F6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017842 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.4e-10
Identity = 38/71 (53.52%), Postives = 58/71 (81.69%), Query Frame = 1


Query: 36  ASRSSRGTTTTT-TEVKIRMTKRELEKLLSKVEVEELPVTELLLQLIEVGDESESTHRRS 95
           +S S+ GT+TT+ TEVKI++TK++LEKLL K++V+++ V ++L QLI V D+ ++   RS
Sbjct: 65  SSYSNYGTSTTSGTEVKIKITKKQLEKLLGKMDVKDMSVQQVLAQLISVSDKYQTQQIRS 124

Query: 96  WRPSLQSIPEL 106
           WRP+LQSIPE+
Sbjct: 125 WRPALQSIPEV 135

[Close]

BLAST of CmaCh16G008680 vs. TrEMBL
Match: A0A0D2U1A6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G438000 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.2e-09
Identity = 33/63 (52.38%), Postives = 52/63 (82.54%), Query Frame = 1


Query: 43  TTTTTTEVKIRMTKRELEKLLSKVEVEELPVTELLLQLIEVGDESESTHRRSWRPSLQSI 102
           +T T  EVK+++TK++LE+LL +V+V+EL V ++L QLI V ++ + T++RSWRP+LQSI
Sbjct: 56  STPTVHEVKVKITKKQLEELLGRVDVKELSVQQVLAQLINVSNQFDETNQRSWRPALQSI 115

Query: 103 PEL 106
           PE+
Sbjct: 116 PEV 118

[Close]

BLAST of CmaCh16G008680 vs. TAIR10
Match: AT4G21920.1 (AT4G21920.1 unknown protein)

HSP 1 Score: 47.0 bits (110), Expect = 8.5e-06
Identity = 29/86 (33.72%), Postives = 50/86 (58.14%), Query Frame = 1


Query: 27  KRKLNADDGASRSSRGTTTTTTEVKIRMTKRELEKLLSKVEVEELPVTELLLQLI-EVGD 86
           ++ L      + +S  +++   E+KIR+TK+ELE L+  + ++ L   E+L +LI E GD
Sbjct: 43  EKLLGETSNVTSTSSSSSSERREIKIRITKKELEDLMRNIGLKSLTAEEILSKLIFEGGD 102

Query: 87  E------SESTHRRSWRPSLQSIPEL 106
           +        + H + W+P LQSIPE+
Sbjct: 103 QIGFSAVDVTNHHQPWKPVLQSIPEM 128

[Close]

BLAST of CmaCh16G008680 vs. NCBI nr
Match: gi|659126877|ref|XP_008463409.1| (PREDICTED: uncharacterized protein LOC103501580 [Cucumis melo])

HSP 1 Score: 132.1 bits (331), Expect = 5.7e-28
Identity = 72/106 (67.92%), Postives = 90/106 (84.91%), Query Frame = 1


Query: 1   MGNCTSNKYLAETMPMSE-EEELVETLKRKLNADDGASRSSRGTTTTTTEVKIRMTKREL 60
           MGNCTSNKYLAETMPMS+ EEE+ E L+R+L  +   SR+ + + +TTTE+KIR+TK+EL
Sbjct: 1   MGNCTSNKYLAETMPMSDDEEEVEEMLRRRLVVE---SRAQKCSASTTTELKIRITKKEL 60

Query: 61  EKLLSKVEVEELPVTELLLQLIEVGDESESTHRRSWRPSLQSIPEL 106
           EKLL KV++EELPV ELL +LI+VGD  ESTHRRSW+PSLQSIPE+
Sbjct: 61  EKLLCKVDMEELPVAELLSKLIDVGDAFESTHRRSWQPSLQSIPEV 103

[Close]

BLAST of CmaCh16G008680 vs. NCBI nr
Match: gi|700200987|gb|KGN56120.1| (hypothetical protein Csa_3G076560 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 1.7e-27
Identity = 74/107 (69.16%), Postives = 90/107 (84.11%), Query Frame = 1


Query: 1   MGNCTSNKYLAETM-PMSEE-EELVETLKRKLNADDGASRSSRGTTTTTTEVKIRMTKRE 60
           MGNCTSNKYLAET+ PMS++ EE+ E L+R+L   +GA + S    +TTTE+KIR+TKRE
Sbjct: 1   MGNCTSNKYLAETIVPMSDDDEEVEEMLRRRLVVKNGAQKCS---ASTTTELKIRITKRE 60

Query: 61  LEKLLSKVEVEELPVTELLLQLIEVGDESESTHRRSWRPSLQSIPEL 106
           LEKLL KV+VEELPVTELL +LI+VGD  ESTH+RSWRPSLQSIPE+
Sbjct: 61  LEKLLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQSIPEV 104

[Close]

BLAST of CmaCh16G008680 vs. NCBI nr
Match: gi|659126879|ref|XP_008463410.1| (PREDICTED: uncharacterized protein LOC103501581 [Cucumis melo])

HSP 1 Score: 83.6 bits (205), Expect = 2.3e-13
Identity = 56/116 (48.28%), Postives = 69/116 (59.48%), Query Frame = 1


Query: 1   MGNCTSNKYLAETMPMSEEEELVETLKRKLNA--------DDGASRSSRGTTTTTTEVKI 60
           MGNC S+KYL        +EE +E +KR + A        D+    S   TTTTTTEVKI
Sbjct: 1   MGNCVSSKYLCGKSTRISDEEALEMMKRTVMAYNDETPKIDETPRSSVAATTTTTTEVKI 60

Query: 61  RMTKRELEKLLSKVEV----EELPVTELLLQLIEVGDESESTHRRSWRPSLQSIPE 105
           ++TKRELE LL   +V    EEL  T+ L +LI++ DE      RSWRPSLQSIPE
Sbjct: 61  KITKRELEMLLGNYKVVEVKEELSTTQFLSRLIDI-DEGIEMQPRSWRPSLQSIPE 115

[Close]

BLAST of CmaCh16G008680 vs. NCBI nr
Match: gi|255563885|ref|XP_002522942.1| (PREDICTED: uncharacterized protein LOC8260822 [Ricinus communis])

HSP 1 Score: 78.2 bits (191), Expect = 9.7e-12
Identity = 44/98 (44.90%), Postives = 69/98 (70.41%), Query Frame = 1


Query: 7   NKYLAETMPMSEEEELVETLKRKLNADDGASRSSRGTTTTTTEVKIRMTKRELEKLLSKV 66
           +++ +      EE+ L+      L  D G++ SS   T T+TEVKI++TK++LE+LL +V
Sbjct: 25  DRFFSSNTRQEEEKGLL------LGEDKGSTISS--ATVTSTEVKIKITKKQLEELLGRV 84

Query: 67  EVEELPVTELLLQLIEVGDESESTHRRSWRPSLQSIPE 105
           +++EL + ++L QL++VGD S  TH+RSWRP+LQSIPE
Sbjct: 85  DMKELSIEQVLAQLMKVGDPSFETHQRSWRPNLQSIPE 114

[Close]

BLAST of CmaCh16G008680 vs. NCBI nr
Match: gi|703083197|ref|XP_010092153.1| (hypothetical protein L484_017842 [Morus notabilis])

HSP 1 Score: 71.6 bits (174), Expect = 9.1e-10
Identity = 38/71 (53.52%), Postives = 58/71 (81.69%), Query Frame = 1


Query: 36  ASRSSRGTTTTT-TEVKIRMTKRELEKLLSKVEVEELPVTELLLQLIEVGDESESTHRRS 95
           +S S+ GT+TT+ TEVKI++TK++LEKLL K++V+++ V ++L QLI V D+ ++   RS
Sbjct: 65  SSYSNYGTSTTSGTEVKIKITKKQLEKLLGKMDVKDMSVQQVLAQLISVSDKYQTQQIRS 124

Query: 96  WRPSLQSIPEL 106
           WRP+LQSIPE+
Sbjct: 125 WRPALQSIPEV 135

The following BLAST results are available for this feature:

BLAST of CmaCh16G008680 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh16G008680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2D8_CUCSA	1.2e-27	69.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G076560 PE=4 SV=1	[more]
B9SAC3_RICCO	6.8e-12	44.90	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0584600 PE=4 SV=1	[more]
B9SAC5_RICCO	6.4e-10	40.86	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0584620 PE=4 SV=1	[more]
W9R0F6_9ROSA	6.4e-10	53.52	Uncharacterized protein OS=Morus notabilis GN=L484_017842 PE=4 SV=1	[more]
A0A0D2U1A6_GOSRA	3.2e-09	52.38	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G438000 PE=4 SV=1	[more]

BLAST of CmaCh16G008680 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21920.1	8.5e-06	33.72	unknown protein	[more]

BLAST of CmaCh16G008680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126877\|ref\|XP_008463409.1\|	5.7e-28	67.92	PREDICTED: uncharacterized protein LOC103501580 [Cucumis melo]	[more]
gi\|700200987\|gb\|KGN56120.1\|	1.7e-27	69.16	hypothetical protein Csa_3G076560 [Cucumis sativus]	[more]
gi\|659126879\|ref\|XP_008463410.1\|	2.3e-13	48.28	PREDICTED: uncharacterized protein LOC103501581 [Cucumis melo]	[more]
gi\|255563885\|ref\|XP_002522942.1\|	9.7e-12	44.90	PREDICTED: uncharacterized protein LOC8260822 [Ricinus communis]	[more]
gi\|703083197\|ref\|XP_010092153.1\|	9.1e-10	53.52	hypothetical protein L484_017842 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G008680.1	CmaCh16G008680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33647	FAMILY NOT NAMED	coord: 2..105 score: 1.8
None	No IPR available	PANTHER	PTHR33647:SF5	SUBFAMILY NOT NAMED	coord: 2..105 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G008680	Cucsa.060030	Cucumber (Gy14) v1	cgycmaB0080
CmaCh16G008680	Cla005317	Watermelon (97103) v1	cmawmB298
CmaCh16G008680	Csa3G076560	Cucumber (Chinese Long) v2	cmacuB328
CmaCh16G008680	MELO3C025367	Melon (DHL92) v3.5.1	cmameB292
CmaCh16G008680	ClCG10G005340	Watermelon (Charleston Gray)	cmawcgB283
CmaCh16G008680	ClCG05G014310	Watermelon (Charleston Gray)	cmawcgB298
CmaCh16G008680	CSPI03G05050	Wild cucumber (PI 183967)	cmacpiB334
CmaCh16G008680	CmoCh16G008930	Cucurbita moschata (Rifu)	cmacmoB324
CmaCh16G008680	Lsi05G005870	Bottle gourd (USVL1VR-Ls)	cmalsiB315
CmaCh16G008680	MELO3C025367.2	Melon (DHL92) v3.6.1	cmamedB348
CmaCh16G008680	CsaV3_3G005050	Cucumber (Chinese Long) v3	cmacucB0382
CmaCh16G008680	Cla97C10G189580	Watermelon (97103) v2	cmawmbB336
CmaCh16G008680	Bhi11G000471	Wax gourd	cmawgoB0421
CmaCh16G008680	CsGy3G005120	Cucumber (Gy14) v2	cgybcmaB341
CmaCh16G008680	Carg12819	Silver-seed gourd	carcmaB1243
CmaCh16G008680	Carg00075	Silver-seed gourd	carcmaB0946

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh16G008680	CmaCh09G009520	Cucurbita maxima (Rimu)	cmacmaB041
CmaCh16G008680	CmaCh04G009600	Cucurbita maxima (Rimu)	cmacmaB350

The following block(s) are covering this gene:

None