ClCG05G014310 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G014310
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr05 : 23880934 .. 23881275 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAACTGTCTACGGCGGGACGGAGAGGCGGCGCAGTGGGCCGGCGAGGAGTGGGATTTTCTCGCGGCGCAGGACGACGATGGTCGGGAAGAGCTTCTCAGCGACAGCAAGAAGAAAAAGTGTTCAACGGCGGAGATGGCGGCGGCGTCGACGACGGCGACGGAGGTGAAGATTAAGATCACGAAGAGGCAGTTGGAGGAGCTTTTGGGGAAGGTGGATGTTAAGGAGATGTCCGTACAACAGGTTCTAGCTCAGTTGATGGGCGTCGGAGATCAGTTTCACGAATCTCGCCACCGTCACTGGCGGCCGGTGTTGCAGAGTATACCGGAATTAGATTGA

mRNA sequence

ATGGGCAACTGTCTACGGCGGGACGGAGAGGCGGCGCAGTGGGCCGGCGAGGAGTGGGATTTTCTCGCGGCGCAGGACGACGATGGTCGGGAAGAGCTTCTCAGCGACAGCAAGAAGAAAAAGTGTTCAACGGCGGAGATGGCGGCGGCGTCGACGACGGCGACGGAGGTGAAGATTAAGATCACGAAGAGGCAGTTGGAGGAGCTTTTGGGGAAGGTGGATGTTAAGGAGATGTCCGTACAACAGGTTCTAGCTCAGTTGATGGGCGTCGGAGATCAGTTTCACGAATCTCGCCACCGTCACTGGCGGCCGGTGTTGCAGAGTATACCGGAATTAGATTGA

Coding sequence (CDS)

ATGGGCAACTGTCTACGGCGGGACGGAGAGGCGGCGCAGTGGGCCGGCGAGGAGTGGGATTTTCTCGCGGCGCAGGACGACGATGGTCGGGAAGAGCTTCTCAGCGACAGCAAGAAGAAAAAGTGTTCAACGGCGGAGATGGCGGCGGCGTCGACGACGGCGACGGAGGTGAAGATTAAGATCACGAAGAGGCAGTTGGAGGAGCTTTTGGGGAAGGTGGATGTTAAGGAGATGTCCGTACAACAGGTTCTAGCTCAGTTGATGGGCGTCGGAGATCAGTTTCACGAATCTCGCCACCGTCACTGGCGGCCGGTGTTGCAGAGTATACCGGAATTAGATTGA

Protein sequence

MGNCLRRDGEAAQWAGEEWDFLAAQDDDGREELLSDSKKKKCSTAEMAAASTTATEVKIKITKRQLEELLGKVDVKEMSVQQVLAQLMGVGDQFHESRHRHWRPVLQSIPELD

Homology

[Close]

BLAST of ClCG05G014310 vs. TrEMBL
Match: A0A0D2U1A6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G438000 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-21
Identity = 61/122 (50.00%), Postives = 79/122 (64.75%), Query Frame = 1


Query: 1   MGNCLRRDGEAAQWAGEEWDFLAAQDDDGREELLSDSKKKKCSTAE---------MAAAS 60
           MGNCLR    + QWAG++W    A  D G ++  SD K K+                +++
Sbjct: 1   MGNCLRHQS-STQWAGDDWGTTVA--DYGEDDGFSDIKTKEKGIVGDHHQKDGFITTSST 60

Query: 61  TTATEVKIKITKRQLEELLGKVDVKEMSVQQVLAQLMGVGDQFHESRHRHWRPVLQSIPE 114
            T  EVK+KITK+QLEELLG+VDVKE+SVQQVLAQL+ V +QF E+  R WRP LQSIPE
Sbjct: 61  PTVHEVKVKITKKQLEELLGRVDVKELSVQQVLAQLINVSNQFDETNQRSWRPALQSIPE 119

[Close]

BLAST of ClCG05G014310 vs. TrEMBL
Match: M5WJU4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021614mg PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 6.5e-21
Identity = 60/124 (48.39%), Postives = 82/124 (66.13%), Query Frame = 1


Query: 1   MGNCLRRDGEAAQWAGEEWDFLA-AQDDDGREELLSDSKKKKCSTAE----------MAA 60
           MGNC+R +  + QW G++W  +A   DD   EE++  +KK K    +          +A 
Sbjct: 1   MGNCIRHE-PSMQWGGDDWGCMANGVDDHEEEEIMKKNKKIKMEEGQGGFEDLGAVGLAK 60

Query: 61  ASTTATEVKIKITKRQLEELLGKVDVKEMSVQQVLAQLMGVGDQFHESRHRHWRPVLQSI 114
               ATEVKIKITK+QLEELLG+VD+K+MSVQQVLA+L+  GD++ E+  R WRP LQSI
Sbjct: 61  KLGGATEVKIKITKKQLEELLGRVDLKQMSVQQVLAKLISFGDRY-EAHQRSWRPALQSI 120

[Close]

BLAST of ClCG05G014310 vs. TrEMBL
Match: B9SAC3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0584600 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-20
Identity = 58/115 (50.43%), Postives = 78/115 (67.83%), Query Frame = 1


Query: 1   MGNCLRRDGEAAQWAGEEWDFLAAQD----DDGREELLSDSKKKKCSTAEMAAASTTATE 60
           MGNCLRR+  + QW G++W      D     + R+E        +   + +++A+ T+TE
Sbjct: 1   MGNCLRRES-SMQWGGDDWGSPLPDDRFFSSNTRQEEEKGLLLGEDKGSTISSATVTSTE 60

Query: 61  VKIKITKRQLEELLGKVDVKEMSVQQVLAQLMGVGDQFHESRHRHWRPVLQSIPE 112
           VKIKITK+QLEELLG+VD+KE+S++QVLAQLM VGD   E+  R WRP LQSIPE
Sbjct: 61  VKIKITKKQLEELLGRVDMKELSIEQVLAQLMKVGDPSFETHQRSWRPNLQSIPE 114

[Close]

BLAST of ClCG05G014310 vs. TrEMBL
Match: A0A061F4T5_THECC (Expression of the gene is downregulated in the presence of paraquat, putative OS=Theobroma cacao GN=TCM_030889 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 7.2e-20
Identity = 61/130 (46.92%), Postives = 78/130 (60.00%), Query Frame = 1


Query: 1   MGNCLRRDGEAAQWAGEEWDFLAAQDDDGREELLSDSKKKKCSTAEM------------- 60
           MGNCLR    + QWAG++W    A+DDD      S++    C    M             
Sbjct: 1   MGNCLRHQS-STQWAGDDWGTSPAEDDDSGF-FASETTNDTCEYKAMMNMEEKGLLRNHQ 60

Query: 61  ----AAASTTATEVKIKITKRQLEELLGKVDVKEMSVQQVLAQLMGVGDQFHESRHRHWR 114
                 +S T  EVK+KITK+QLEELLG+VDVKE+SVQQVLAQL+ V +Q+ E+  R WR
Sbjct: 61  KNGFTTSSATTHEVKVKITKKQLEELLGRVDVKELSVQQVLAQLINVRNQY-ETSQRSWR 120

[Close]

BLAST of ClCG05G014310 vs. TrEMBL
Match: W9R0F6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017842 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.7e-19
Identity = 59/139 (42.45%), Postives = 82/139 (58.99%), Query Frame = 1


Query: 1   MGNCLRRDGEAAQWAGEEW---------------------DFLAAQDDDGREELLSDSKK 60
           MGNC+RR+  + +W GE+W                     D +  ++D G   +L    +
Sbjct: 1   MGNCMRRES-SMRWGGEDWGSPAADHGLFPVNKSGGTSKNDIMEIEEDQGL--ILKHGGE 60

Query: 61  K-----KCSTAEMAAASTTATEVKIKITKRQLEELLGKVDVKEMSVQQVLAQLMGVGDQF 114
           K       S +    ++T+ TEVKIKITK+QLE+LLGK+DVK+MSVQQVLAQL+ V D++
Sbjct: 61  KGFVNATSSYSNYGTSTTSGTEVKIKITKKQLEKLLGKMDVKDMSVQQVLAQLISVSDKY 120

[Close]

BLAST of ClCG05G014310 vs. TAIR10
Match: AT3G20340.1 (AT3G20340.1 Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.)

HSP 1 Score: 78.2 bits (191), Expect = 3.7e-15
Identity = 43/116 (37.07%), Postives = 67/116 (57.76%), Query Frame = 1


Query: 1   MGNCLRRDGEAAQWAGEEWD-FLAAQDDDGREELLSDSKKKKCSTAEMAAASTTATEVKI 60
           MGNCLR + E   WAGE+WD F+   ++D      +    K       + +S  + E+KI
Sbjct: 1   MGNCLRHESEM-HWAGEDWDEFITEDEEDHHYSSKTTRDGKPVIVTRDSKSSVPSHEIKI 60

Query: 61  KITKRQLEELLGKVDVKEMSVQQVLAQLMGVGDQFHE--SRHRHWRPVLQSIPELD 114
           ++TK+QL +LL KV+V +++ QQ       + ++ +E  ++ R WRPVLQSIPE++
Sbjct: 61  RLTKKQLHDLLSKVNVHDLTFQQQTFSCPILNNRGYEEANQQRLWRPVLQSIPEVN 115

[Close]

BLAST of ClCG05G014310 vs. TAIR10
Match: AT4G21920.1 (AT4G21920.1 unknown protein)

HSP 1 Score: 64.7 bits (156), Expect = 4.2e-11
Identity = 40/132 (30.30%), Postives = 72/132 (54.55%), Query Frame = 1


Query: 1   MGNCLR-RDGEAAQWAGEE-----------WDFLAAQDDDGREELLSDSKKKKCSTAEMA 60
           MGNC+   +     W+G++              +   D+D  E+LL ++      T+  +
Sbjct: 1   MGNCICVTEKTTTSWSGDDNGSYNKRRRRRRSTVVHDDNDDGEKLLGETSNV---TSTSS 60

Query: 61  AASTTATEVKIKITKRQLEELLGKVDVKEMSVQQVLAQLM-GVGDQFHES------RHRH 114
           ++S+   E+KI+ITK++LE+L+  + +K ++ +++L++L+   GDQ   S       H+ 
Sbjct: 61  SSSSERREIKIRITKKELEDLMRNIGLKSLTAEEILSKLIFEGGDQIGFSAVDVTNHHQP 120

[Close]

BLAST of ClCG05G014310 vs. NCBI nr
Match: gi|823222168|ref|XP_012443791.1| (PREDICTED: uncharacterized protein LOC105768423 [Gossypium raimondii])

HSP 1 Score: 110.5 bits (275), Expect = 1.9e-21
Identity = 61/122 (50.00%), Postives = 79/122 (64.75%), Query Frame = 1


Query: 1   MGNCLRRDGEAAQWAGEEWDFLAAQDDDGREELLSDSKKKKCSTAE---------MAAAS 60
           MGNCLR    + QWAG++W    A  D G ++  SD K K+                +++
Sbjct: 1   MGNCLRHQS-STQWAGDDWGTTVA--DYGEDDGFSDIKTKEKGIVGDHHQKDGFITTSST 60

Query: 61  TTATEVKIKITKRQLEELLGKVDVKEMSVQQVLAQLMGVGDQFHESRHRHWRPVLQSIPE 114
            T  EVK+KITK+QLEELLG+VDVKE+SVQQVLAQL+ V +QF E+  R WRP LQSIPE
Sbjct: 61  PTVHEVKVKITKKQLEELLGRVDVKELSVQQVLAQLINVSNQFDETNQRSWRPALQSIPE 119

[Close]

BLAST of ClCG05G014310 vs. NCBI nr
Match: gi|694394646|ref|XP_009372706.1| (PREDICTED: uncharacterized protein LOC103961815 [Pyrus x bretschneideri])

HSP 1 Score: 109.4 bits (272), Expect = 4.2e-21
Identity = 66/133 (49.62%), Postives = 82/133 (61.65%), Query Frame = 1


Query: 1   MGNCLRRDGEAAQWAGEEWDFLA--AQDDDGREELLSDSKKKK--------------CST 60
           MGNC+R D  + +WAGE+W  LA   + DD R++      KKK              CST
Sbjct: 1   MGNCIRHDS-SMKWAGEDWGCLADGMKGDDYRDQTDVKIMKKKDNKKIAEASQMDSFCST 60

Query: 61  AEMAAASTT----ATEVKIKITKRQLEELLGKVDVKEMSVQQVLAQLMGVGDQFHESRHR 114
                +S++    ATEVKIKITK+QLEELLGKV+ K+MSVQQVLAQL+ V D F     R
Sbjct: 61  TTATKSSSSKVGAATEVKIKITKKQLEELLGKVEYKQMSVQQVLAQLIRVSDGFETQLQR 120

[Close]

BLAST of ClCG05G014310 vs. NCBI nr
Match: gi|645241090|ref|XP_008226914.1| (PREDICTED: uncharacterized protein LOC103326464 [Prunus mume])

HSP 1 Score: 109.0 bits (271), Expect = 5.5e-21
Identity = 61/126 (48.41%), Postives = 81/126 (64.29%), Query Frame = 1


Query: 1   MGNCLRRDGEAAQWAGEEWDFLAAQDDDGREELLSDSKKKK-------------CSTAEM 60
           MGNC+R +  + QW G++W  +A   DD  E++    KKKK                A +
Sbjct: 1   MGNCIRHE-PSMQWGGDDWGCMANGVDDHEEDMEEIMKKKKKIKMEEGQGGFEDLGAAGL 60

Query: 61  AAASTTATEVKIKITKRQLEELLGKVDVKEMSVQQVLAQLMGVGDQFHESRHRHWRPVLQ 114
           A     ATEVKIKITK+QLEELLG+VD+K+MSVQQVLA+L+  GD++ E+  R WRP LQ
Sbjct: 61  AKKLGGATEVKIKITKKQLEELLGRVDLKQMSVQQVLAKLISFGDRY-EAHQRSWRPALQ 120

[Close]

BLAST of ClCG05G014310 vs. NCBI nr
Match: gi|595883901|ref|XP_007212873.1| (hypothetical protein PRUPE_ppa021614mg [Prunus persica])

HSP 1 Score: 108.2 bits (269), Expect = 9.4e-21
Identity = 60/124 (48.39%), Postives = 82/124 (66.13%), Query Frame = 1


Query: 1   MGNCLRRDGEAAQWAGEEWDFLA-AQDDDGREELLSDSKKKKCSTAE----------MAA 60
           MGNC+R +  + QW G++W  +A   DD   EE++  +KK K    +          +A 
Sbjct: 1   MGNCIRHE-PSMQWGGDDWGCMANGVDDHEEEEIMKKNKKIKMEEGQGGFEDLGAVGLAK 60

Query: 61  ASTTATEVKIKITKRQLEELLGKVDVKEMSVQQVLAQLMGVGDQFHESRHRHWRPVLQSI 114
               ATEVKIKITK+QLEELLG+VD+K+MSVQQVLA+L+  GD++ E+  R WRP LQSI
Sbjct: 61  KLGGATEVKIKITKKQLEELLGRVDLKQMSVQQVLAKLISFGDRY-EAHQRSWRPALQSI 120

[Close]

BLAST of ClCG05G014310 vs. NCBI nr
Match: gi|255563885|ref|XP_002522942.1| (PREDICTED: uncharacterized protein LOC8260822 [Ricinus communis])

HSP 1 Score: 107.5 bits (267), Expect = 1.6e-20
Identity = 58/115 (50.43%), Postives = 78/115 (67.83%), Query Frame = 1


Query: 1   MGNCLRRDGEAAQWAGEEWDFLAAQD----DDGREELLSDSKKKKCSTAEMAAASTTATE 60
           MGNCLRR+  + QW G++W      D     + R+E        +   + +++A+ T+TE
Sbjct: 1   MGNCLRRES-SMQWGGDDWGSPLPDDRFFSSNTRQEEEKGLLLGEDKGSTISSATVTSTE 60

Query: 61  VKIKITKRQLEELLGKVDVKEMSVQQVLAQLMGVGDQFHESRHRHWRPVLQSIPE 112
           VKIKITK+QLEELLG+VD+KE+S++QVLAQLM VGD   E+  R WRP LQSIPE
Sbjct: 61  VKIKITKKQLEELLGRVDMKELSIEQVLAQLMKVGDPSFETHQRSWRPNLQSIPE 114

The following BLAST results are available for this feature:

BLAST of ClCG05G014310 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D2U1A6_GOSRA	1.3e-21	50.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G438000 PE=4 SV=1	[more]
M5WJU4_PRUPE	6.5e-21	48.39	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021614mg PE=4 SV=1	[more]
B9SAC3_RICCO	1.1e-20	50.43	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0584600 PE=4 SV=1	[more]
A0A061F4T5_THECC	7.2e-20	46.92	Expression of the gene is downregulated in the presence of paraquat, putative OS...	[more]
W9R0F6_9ROSA	2.7e-19	42.45	Uncharacterized protein OS=Morus notabilis GN=L484_017842 PE=4 SV=1	[more]

BLAST of ClCG05G014310 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G20340.1	3.7e-15	37.07	Expression of the gene is downregulated in the presence of paraquat,...	[more]
AT4G21920.1	4.2e-11	30.30	unknown protein	[more]

BLAST of ClCG05G014310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|823222168\|ref\|XP_012443791.1\|	1.9e-21	50.00	PREDICTED: uncharacterized protein LOC105768423 [Gossypium raimondii]	[more]
gi\|694394646\|ref\|XP_009372706.1\|	4.2e-21	49.62	PREDICTED: uncharacterized protein LOC103961815 [Pyrus x bretschneideri]	[more]
gi\|645241090\|ref\|XP_008226914.1\|	5.5e-21	48.41	PREDICTED: uncharacterized protein LOC103326464 [Prunus mume]	[more]
gi\|595883901\|ref\|XP_007212873.1\|	9.4e-21	48.39	hypothetical protein PRUPE_ppa021614mg [Prunus persica]	[more]
gi\|255563885\|ref\|XP_002522942.1\|	1.6e-20	50.43	PREDICTED: uncharacterized protein LOC8260822 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006979	response to oxidative stress
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G014310.1	ClCG05G014310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33647	FAMILY NOT NAMED	coord: 2..113 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G014310	Cla97C03G055920	Watermelon (97103) v2	wcgwmbB226
ClCG05G014310	Cla97C10G189580	Watermelon (97103) v2	wcgwmbB219
ClCG05G014310	Cla97C05G095570	Watermelon (97103) v2	wcgwmbB229
ClCG05G014310	Bhi09G001606	Wax gourd	wcgwgoB473
ClCG05G014310	CmaCh09G009520	Cucurbita maxima (Rimu)	cmawcgB025
ClCG05G014310	CmaCh16G008680	Cucurbita maxima (Rimu)	cmawcgB298
ClCG05G014310	CmoCh09G009500	Cucurbita moschata (Rifu)	cmowcgB019
ClCG05G014310	Cp4.1LG06g08830	Cucurbita pepo (Zucchini)	cpewcgB704
ClCG05G014310	Cp4.1LG02g01000	Cucurbita pepo (Zucchini)	cpewcgB519
ClCG05G014310	MELO3C002460.2	Melon (DHL92) v3.6.1	medwcgB149
ClCG05G014310	Carg12819	Silver-seed gourd	carwcgB0885
ClCG05G014310	Carg05628	Silver-seed gourd	carwcgB0998

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
ClCG05G014310	ClCG10G005340	Watermelon (Charleston Gray)	wcgwcgB053
ClCG05G014310	ClCG03G004770	Watermelon (Charleston Gray)	wcgwcgB142

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G014310	Wax gourd	wcgwgoB451
ClCG05G014310	Cucurbita maxima (Rimu)	cmawcgB408
ClCG05G014310	Cucurbita moschata (Rifu)	cmowcgB407
ClCG05G014310	Melon (DHL92) v3.5.1	mewcgB437
ClCG05G014310	Watermelon (97103) v1	wcgwmB285
ClCG05G014310	Bottle gourd (USVL1VR-Ls)	lsiwcgB285
ClCG05G014310	Melon (DHL92) v3.6.1	medwcgB419