Carg05628 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05628
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	DUF4228 domain protein
Location	Cucurbita_argyrosperma_scaffold_033 : 19763 .. 20047 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAACTGTCTGCGGCGGGACGGCGCGGCGGCGCGTTGGGCAGGCGAGGAGTGGGACTTTCTCGCGGCGGATGTGGAGGACGGGGGGAAAAGACAGGGATCCACGGCGGCGTCCACGGAGGTGAAAATTAAGATCACGAAGAGGCAGTTGGAGGAGCTGTTGGGGAAGGTGGATGTTGAGGAGATGTCCGTACAGCAGGTTTTGGCTCAATTGATCAGTGCCGGCGAGTCTCGCCACCGTTCGTGGCGCCCGGTGTTGCAGAGCATACGGGAAGTTGACTGA

mRNA sequence

ATGGGCAACTGTCTGCGGCGGGACGGCGCGGCGGCGCGTTGGGCAGGCGAGGAGTGGGACTTTCTCGCGGCGGATGTGGAGGACGGGGGGAAAAGACAGGGATCCACGGCGGCGTCCACGGAGGTGAAAATTAAGATCACGAAGAGGCAGTTGGAGGAGCTGTTGGGGAAGGTGGATGTTGAGGAGATGTCCGTACAGCAGGTTTTGGCTCAATTGATCAGTGCCGGCGAGTCTCGCCACCGTTCGTGGCGCCCGGTGTTGCAGAGCATACGGGAAGTTGACTGA

Coding sequence (CDS)

ATGGGCAACTGTCTGCGGCGGGACGGCGCGGCGGCGCGTTGGGCAGGCGAGGAGTGGGACTTTCTCGCGGCGGATGTGGAGGACGGGGGGAAAAGACAGGGATCCACGGCGGCGTCCACGGAGGTGAAAATTAAGATCACGAAGAGGCAGTTGGAGGAGCTGTTGGGGAAGGTGGATGTTGAGGAGATGTCCGTACAGCAGGTTTTGGCTCAATTGATCAGTGCCGGCGAGTCTCGCCACCGTTCGTGGCGCCCGGTGTTGCAGAGCATACGGGAAGTTGACTGA

Protein sequence

MGNCLRRDGAAARWAGEEWDFLAADVEDGGKRQGSTAASTEVKIKITKRQLEELLGKVDVEEMSVQQVLAQLISAGESRHRSWRPVLQSIREVD

Homology

[Close]

BLAST of Carg05628 vs. NCBI nr
Match: XP_022936225.1 (uncharacterized protein LOC111442898 [Cucurbita moschata])

HSP 1 Score: 137.9 bits (346), Expect = 1.8e-29
Identity = 77/106 (72.64%), Postives = 85/106 (80.19%), Query Frame = 0


Query: 1   MGNCLRRDGAAARWAGEEWDFLAADVEDGGK--------RQGSTAASTEVKIKITKRQLE 60
           MGNCLRRDGAAA+WAGEEWDFLAA  ED G+        ++ S+ A+TEVKIKITKRQLE
Sbjct: 1   MGNCLRRDGAAAQWAGEEWDFLAA--EDDGREGLLGEIEKKKSSTAATEVKIKITKRQLE 60

Query: 61  ELLGKVDVEEMSVQQVLAQLISAG----ESRHRSWRPVLQSIREVD 95
           ELLGKVD++EMSVQQVLAQLI  G    ESRHR WRPVLQSI EVD
Sbjct: 61  ELLGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 104

[Close]

BLAST of Carg05628 vs. NCBI nr
Match: XP_022975730.1 (uncharacterized protein LOC111475920 [Cucurbita maxima])

HSP 1 Score: 134.4 bits (337), Expect = 2.0e-28
Identity = 74/105 (70.48%), Postives = 84/105 (80.00%), Query Frame = 0


Query: 1   MGNCLRRDGAAARWAGEEWDFLAADVEDG-------GKRQGSTAASTEVKIKITKRQLEE 60
           MGNCLRRDGAAA+WAGEEWD LAA+ +DG        +++ S+  +TEVKIKITKRQLEE
Sbjct: 1   MGNCLRRDGAAAQWAGEEWDLLAAE-DDGREGLLGENEKKKSSTTATEVKIKITKRQLEE 60

Query: 61  LLGKVDVEEMSVQQVLAQLISAG----ESRHRSWRPVLQSIREVD 95
           LLGKVD++EMSVQQVLAQLI  G    ESRHR WRPVLQSI EVD
Sbjct: 61  LLGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 104

[Close]

BLAST of Carg05628 vs. NCBI nr
Match: XP_023536165.1 (uncharacterized protein LOC111797410 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.4 bits (337), Expect = 2.0e-28
Identity = 75/106 (70.75%), Postives = 84/106 (79.25%), Query Frame = 0


Query: 1   MGNCLRRDGAAARWAGEEWDFLAADVEDGGK--------RQGSTAASTEVKIKITKRQLE 60
           MGNC+RRDGAAA+WAGEEWDFLAA  ED G+        ++ S+ A+TEVKIKITKRQLE
Sbjct: 1   MGNCIRRDGAAAQWAGEEWDFLAA--EDDGREGLLGEIEKKKSSTAATEVKIKITKRQLE 60

Query: 61  ELLGKVDVEEMSVQQVLAQLISAG----ESRHRSWRPVLQSIREVD 95
           ELLGKVD++EMSVQQVLAQLI       ESRHR WRPVLQSI EVD
Sbjct: 61  ELLGKVDIKEMSVQQVLAQLIGVDDQFHESRHRHWRPVLQSIPEVD 104

[Close]

BLAST of Carg05628 vs. NCBI nr
Match: XP_022139678.1 (uncharacterized protein LOC111010526 [Momordica charantia])

HSP 1 Score: 129.4 bits (324), Expect = 6.4e-27
Identity = 71/98 (72.45%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 1  MGNCLRRDGAAARWAGEEWDFLAADVEDGGKRQGSTAASTEVKIKITKRQLEELLGKVDV 60
          MGNCLRRDGAA RWAGEEW FLA   E  G     TAA+TEVKIKITK+QLEELLGK DV
Sbjct: 1  MGNCLRRDGAAERWAGEEWGFLAE--EKQGSAAAPTAAATEVKIKITKKQLEELLGKADV 60

Query: 61 EEMSVQQVLAQLISAG----ESRHRSWRPVLQSIREVD 95
          + +SVQQVLAQLI+ G    ESRHR WRPVLQSI E+D
Sbjct: 61 KGLSVQQVLAQLIAVGDQFHESRHRPWRPVLQSIPEMD 96

[Close]

BLAST of Carg05628 vs. NCBI nr
Match: XP_012469087.1 (PREDICTED: uncharacterized protein LOC105787199 [Gossypium raimondii] >KJB13668.1 hypothetical protein B456_002G088300 [Gossypium raimondii])

HSP 1 Score: 94.0 bits (232), Expect = 3.0e-16
Identity = 55/109 (50.46%), Postives = 71/109 (65.14%), Query Frame = 0


Query: 1   MGNCLR--RDGAAARWAGEEWDFLAADVEDGGKRQG------------STAASTEVKIKI 60
           MGNCLR  +  ++ RWAG+EW   A+   DG + +G            S +A  EVK+KI
Sbjct: 1   MGNCLRHQQHQSSTRWAGDEWGSSASAANDGDEEKGLLVNNPEIGLNASPSAIHEVKVKI 60

Query: 61  TKRQLEELLGKVDVEEMSVQQVLAQLISAG---ESRHRSWRPVLQSIRE 93
           +K+QLEELLG+VD +E+SVQQVL QLI+ G   E+  RSWRP LQSI E
Sbjct: 61  SKKQLEELLGRVDAKELSVQQVLEQLINVGNQYEANQRSWRPALQSIPE 109

[Close]

BLAST of Carg05628 vs. TAIR10
Match: AT4G21920.1 (unknown protein)

HSP 1 Score: 48.9 bits (115), Expect = 2.0e-06
Identity = 23/65 (35.38%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 41  EVKIKITKRQLEELLGKVDVEEMSVQQVLAQLISAG-----------ESRHRSWRPVLQS 95
           E+KI+ITK++LE+L+  + ++ ++ +++L++LI  G            + H+ W+PVLQS
Sbjct: 65  EIKIRITKKELEDLMRNIGLKSLTAEEILSKLIFEGGDQIGFSAVDVTNHHQPWKPVLQS 124

[Close]

BLAST of Carg05628 vs. TrEMBL
Match: tr|A0A0D2NK27|A0A0D2NK27_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G088300 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-16
Identity = 55/109 (50.46%), Postives = 71/109 (65.14%), Query Frame = 0


Query: 1   MGNCLR--RDGAAARWAGEEWDFLAADVEDGGKRQG------------STAASTEVKIKI 60
           MGNCLR  +  ++ RWAG+EW   A+   DG + +G            S +A  EVK+KI
Sbjct: 1   MGNCLRHQQHQSSTRWAGDEWGSSASAANDGDEEKGLLVNNPEIGLNASPSAIHEVKVKI 60

Query: 61  TKRQLEELLGKVDVEEMSVQQVLAQLISAG---ESRHRSWRPVLQSIRE 93
           +K+QLEELLG+VD +E+SVQQVL QLI+ G   E+  RSWRP LQSI E
Sbjct: 61  SKKQLEELLGRVDAKELSVQQVLEQLINVGNQYEANQRSWRPALQSIPE 109

[Close]

BLAST of Carg05628 vs. TrEMBL
Match: tr|A0A2P5F2I3|A0A2P5F2I3_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_123290 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.7e-16
Identity = 59/123 (47.97%), Postives = 69/123 (56.10%), Query Frame = 0


Query: 1   MGNCLRRDGAAARWAGEEWDFLAADVEDG------------------------GKRQGST 60
           MGNCLR + +   W GE+W     D   G                        G    + 
Sbjct: 1   MGNCLRHE-SPMTWGGEDWGSPVEDDRRGEMTKRAMEIEEEKGLIKVDRKGFIGTTASNI 60

Query: 61  AASTEVKIKITKRQLEELLGKVDVEEMSVQQVLAQLISAGE-----SRHRSWRPVLQSIR 95
            +STEVKIKITK+QLEELLGKVDV++MSVQQVLAQLIS  +     S HRSWRP LQSI 
Sbjct: 61  TSSTEVKIKITKKQLEELLGKVDVKDMSVQQVLAQLISVSDRCQATSLHRSWRPALQSIP 120

[Close]

BLAST of Carg05628 vs. TrEMBL
Match: tr|A0A2P5WTE6|A0A2P5WTE6_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA26296 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 7.4e-16
Identity = 53/109 (48.62%), Postives = 71/109 (65.14%), Query Frame = 0


Query: 1   MGNCLR--RDGAAARWAGEEWDFLAADVEDGGKRQG------------STAASTEVKIKI 60
           MGNCLR  +  ++ RWAG++W   A+   DG + +G            S +A  EVK+KI
Sbjct: 1   MGNCLRHQQHQSSTRWAGDKWGSTASAANDGDEEKGLLVNNPEIGLNASPSAIHEVKVKI 60

Query: 61  TKRQLEELLGKVDVEEMSVQQVLAQLISAG---ESRHRSWRPVLQSIRE 93
           +K+QLEELLG+VD +E+SVQQVL QLI+ G   E+  RSWRP +QSI E
Sbjct: 61  SKKQLEELLGRVDTKELSVQQVLEQLINVGNQYEANQRSWRPAMQSIPE 109

[Close]

BLAST of Carg05628 vs. TrEMBL
Match: tr|A0A1U8J884|A0A1U8J884_GOSHI (uncharacterized protein LOC107903327 OS=Gossypium hirsutum OX=3635 GN=LOC107903327 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-15
Identity = 57/120 (47.50%), Postives = 70/120 (58.33%), Query Frame = 0


Query: 1   MGNCLRRDGAAARWAGEEWDFLAADV----------------------EDGGKRQGSTAA 60
           MGNCLR   ++ +WAG++W   AAD                       +DG     ST  
Sbjct: 1   MGNCLRHQ-SSTQWAGDDWGTTAADYGDDDGFSDIKTKEKGIVGDHHQKDGFITTSSTPT 60

Query: 61  STEVKIKITKRQLEELLGKVDVEEMSVQQVLAQLISAG----ESRHRSWRPVLQSIREVD 95
             EVK+KITK+QLEELLG+VDV+E+SVQQVLAQLI       E+  RSWRP LQSI EV+
Sbjct: 61  VHEVKVKITKKQLEELLGRVDVKELSVQQVLAQLIHVSNQFDETNQRSWRPALQSIPEVN 119

[Close]

BLAST of Carg05628 vs. TrEMBL
Match: tr|A0A0D2U1A6|A0A0D2U1A6_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G438000 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.7e-15
Identity = 59/120 (49.17%), Postives = 73/120 (60.83%), Query Frame = 0


Query: 1   MGNCLRRDGAAARWAGEEWDFLAADV-EDGG------KRQG---------------STAA 60
           MGNCLR   ++ +WAG++W    AD  ED G      K +G               ST  
Sbjct: 1   MGNCLRHQ-SSTQWAGDDWGTTVADYGEDDGFSDIKTKEKGIVGDHHQKDGFITTSSTPT 60

Query: 61  STEVKIKITKRQLEELLGKVDVEEMSVQQVLAQLISAG----ESRHRSWRPVLQSIREVD 95
             EVK+KITK+QLEELLG+VDV+E+SVQQVLAQLI+      E+  RSWRP LQSI EV+
Sbjct: 61  VHEVKVKITKKQLEELLGRVDVKELSVQQVLAQLINVSNQFDETNQRSWRPALQSIPEVN 119

The following BLAST results are available for this feature:

BLAST of Carg05628 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022936225.1	1.8e-29	72.64	uncharacterized protein LOC111442898 [Cucurbita moschata]	[more]
XP_022975730.1	2.0e-28	70.48	uncharacterized protein LOC111475920 [Cucurbita maxima]	[more]
XP_023536165.1	2.0e-28	70.75	uncharacterized protein LOC111797410 [Cucurbita pepo subsp. pepo]	[more]
XP_022139678.1	6.4e-27	72.45	uncharacterized protein LOC111010526 [Momordica charantia]	[more]
XP_012469087.1	3.0e-16	50.46	PREDICTED: uncharacterized protein LOC105787199 [Gossypium raimondii] >KJB13668....	[more]

BLAST of Carg05628 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21920.1	2.0e-06	35.38	unknown protein	[more]

BLAST of Carg05628 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg05628 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0D2NK27\|A0A0D2NK27_GOSRA	2.0e-16	50.46	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G088300 PE=4 ...	[more]
tr\|A0A2P5F2I3\|A0A2P5F2I3_9ROSA	5.7e-16	47.97	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_123290 PE=4 S...	[more]
tr\|A0A2P5WTE6\|A0A2P5WTE6_GOSBA	7.4e-16	48.62	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA26296 PE=4 SV...	[more]
tr\|A0A1U8J884\|A0A1U8J884_GOSHI	1.3e-15	47.50	uncharacterized protein LOC107903327 OS=Gossypium hirsutum OX=3635 GN=LOC1079033...	[more]
tr\|A0A0D2U1A6\|A0A0D2U1A6_GOSRA	1.7e-15	49.17	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G438000 PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05628-RA	Carg05628-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33647	FAMILY NOT NAMED	coord: 1..93
None	No IPR available	PANTHER	PTHR33647:SF5	SUBFAMILY NOT NAMED	coord: 1..93

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05628	ClCG05G014310	Watermelon (Charleston Gray)	carwcgB0998
Carg05628	CmaCh09G009520	Cucurbita maxima (Rimu)	carcmaB1407
Carg05628	CmoCh09G009500	Cucurbita moschata (Rifu)	carcmoB1364
Carg05628	Cp4.1LG02g01000	Cucurbita pepo (Zucchini)	carcpeB1420
Carg05628	Cp4.1LG06g08830	Cucurbita pepo (Zucchini)	carcpeB1422
Carg05628	Cla97C10G189580	Watermelon (97103) v2	carwmbB1075
Carg05628	Cla97C03G055920	Watermelon (97103) v2	carwmbB1082
Carg05628	Cla97C05G095570	Watermelon (97103) v2	carwmbB1083
Carg05628	Bhi09G001606	Wax gourd	carwgoB1200

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg05628	Carg12819	Silver-seed gourd	carcarB641

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05628	Wax gourd	carwgoB1199
Carg05628	Cucurbita maxima (Rimu)	carcmaB1410
Carg05628	Cucurbita moschata (Rifu)	carcmoB1367