Lsi05G005870 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G005870
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Expression of the gene is downregulated in the presence of paraquat, putative
Location	chr05 : 7316494 .. 7318387 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTCAATTCAAAACTGATAAAAAGGTAATCAATATTAAATTTATTCCTCTTCAAAAAAATATATTAAATTTAGTCCTTATTACTAGTTTCTTATTGATTTTTTCAAGAACTTTTTATTATTAGTTATCATTTACACTTTGAATTCCATGAAAAGTAATTACATTTGTTTTTTCTTACATGAAAATTATTATTACAATTAACTAATTTTGAAAAAAAATTCATCTCTAAGAATCAAATTTAAGATTTAATTATAGTAGGACAAACTATTCACACACACAGATAGACAATAAAATTTTACAGACAGTAAAATTACACACACACAGTCTATCATTGATAGACAGTAATGATAGACAGTAAAATTTTAAGCTAATAACAAAATTTTAAGCTAATAACTCTGTGTTTTTTTATAGACAGTAAAATTTTTCTATATTTGTAAATAGTTTGATATTTTTTTCTGTTTAGAGTAATTTCTCAAAAATCAACCATATTAATTATTATTATATTAGAGTCAAAGAATCAAACATTTTGGCATTCTCCGGGTCCATGAATTAGAATGACGATGAAAAGTCCAACATATATTTGTCTAATTCTATAATGTATCATTACAAAATCATTAAGCTAATAACTCTGTGTTTTTTTTAAAAAAGTTCCAACTATTTTTCCAACCAAAATTATGTTTAACAAATTCTAAAATATATATAGATTAAGCAAACTCAAATCTTGTCGTCTTAATCTTCAAATTTTCATAAAAATAACAATTTAATTCTAAACTTTAGTTCATGTACTTTCAAATTTGTAACAATTTTGTTAACGAATTTTAATAATTGACAATTTAGCTCTTCTACTTTACAATTTGTAATGTTTAGTCTTTATCATGAAAAAAACTATTAAGAGTTAATGAATTTCTTACATGTATATATATAAATTAATTATGGATAAGATTTGTTTAATTATAGATGGTGAAAACTAAGTCATTACGTAATAATAATTGATAGTTAATTTTGATGAGATGTTTCAAGCTAAAGACTAATTAAATTGTTACAAATTAAATTTTAGGGACTAAATTGTTACAAACTAAAAGTTTAGGGACTAAATTATTACTTTTATGTAAGTTTAGGGACCAAAAGTATATTTTAACTTTCTTATGATGAATCCAAATTTAAACTACACAAATTCAAATACTTTCTTAGTTTAACAACAAAACACGTAGGTTGAAAGATTTGAACTTCTGACCTATTAATTACAAACATATCATAACTAGTTGTGTATTATGCTTAATTGTCACAAGTCTAGTCTTTCTTAGTTTATACTAATTTATAATAAATATTAAAATTAAAGGACATTTTATTGGAAGAGTATATTAGGTGATAAATTTCAGTCAAACTTTTTTCTTGATAGTTTTCAATATTTTCACGTGATAATTAAGGAGATGCTTTGGCTTGACTATTCAATATACGCCAACCAACCATCACAATTTTTCCATCCAAATATTTATATATGTAACACAATTCTTTCTCCTTTCTCCAAAACTACCCTTTATTTCTCTCTTTCTTTCTCAAAAGATAATATCAACACCATGGGAAATTGTACGAGCAACAAATATTTGGCCGACACAATGCCGATGAGCGATGAGGACGAGGAAGCGGTGGAGACAGTGAGGAGGAGGCTGATTGCCGATGACGGAGCTCAAAAATCTTCGGCAAGTACCACGATGGAGCTGAAGATTAGGATCACAAAGAGAGAGCTGGAGAAGTTATTGAGCAAAGTGGATGTGGAAGAGCTGCCAGTGAGGGAGCTGTTATCGCAGTTAATAGACGTCGGGGATGCGTTCGAGAGTACTCACCGGCGATCATGGCAGCCTTCTTTGCAAAGCATTCCTGAGGTGAATTGA

mRNA sequence

ATGCATAATATCAACACCATGGGAAATTGTACGAGCAACAAATATTTGGCCGACACAATGCCGATGAGCGATGAGGACGAGGAAGCGGTGGAGACAGTGAGGAGGAGGCTGATTGCCGATGACGGAGCTCAAAAATCTTCGGCAAGTACCACGATGGAGCTGAAGATTAGGATCACAAAGAGAGAGCTGGAGAAGTTATTGAGCAAAGTGGATGTGGAAGAGCTGCCAGTGAGGGAGCTGTTATCGCAGTTAATAGACGTCGGGGATGCGTTCGAGAGTACTCACCGGCGATCATGGCAGCCTTCTTTGCAAAGCATTCCTGAGGTGAATTGA

Coding sequence (CDS)

ATGCATAATATCAACACCATGGGAAATTGTACGAGCAACAAATATTTGGCCGACACAATGCCGATGAGCGATGAGGACGAGGAAGCGGTGGAGACAGTGAGGAGGAGGCTGATTGCCGATGACGGAGCTCAAAAATCTTCGGCAAGTACCACGATGGAGCTGAAGATTAGGATCACAAAGAGAGAGCTGGAGAAGTTATTGAGCAAAGTGGATGTGGAAGAGCTGCCAGTGAGGGAGCTGTTATCGCAGTTAATAGACGTCGGGGATGCGTTCGAGAGTACTCACCGGCGATCATGGCAGCCTTCTTTGCAAAGCATTCCTGAGGTGAATTGA

Protein sequence

MHNINTMGNCTSNKYLADTMPMSDEDEEAVETVRRRLIADDGAQKSSASTTMELKIRITKRELEKLLSKVDVEELPVRELLSQLIDVGDAFESTHRRSWQPSLQSIPEVN

Homology

[Close]

BLAST of Lsi05G005870 vs. TrEMBL
Match: A0A0A0L2D8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G076560 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.2e-37
Identity = 85/105 (80.95%), Postives = 94/105 (89.52%), Query Frame = 1


Query: 7   MGNCTSNKYLADTM-PMSDEDEEAVETVRRRLIADDGAQKSSASTTMELKIRITKRELEK 66
           MGNCTSNKYLA+T+ PMSD+DEE  E +RRRL+  +GAQK SASTT ELKIRITKRELEK
Sbjct: 1   MGNCTSNKYLAETIVPMSDDDEEVEEMLRRRLVVKNGAQKCSASTTTELKIRITKRELEK 60

Query: 67  LLSKVDVEELPVRELLSQLIDVGDAFESTHRRSWQPSLQSIPEVN 111
           LL KVDVEELPV ELLS+LIDVGD FESTH+RSW+PSLQSIPEVN
Sbjct: 61  LLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQSIPEVN 105

[Close]

BLAST of Lsi05G005870 vs. TrEMBL
Match: A0A0D2U1A6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G438000 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-12
Identity = 50/119 (42.02%), Postives = 79/119 (66.39%), Query Frame = 1


Query: 7   MGNC----TSNKYLAD----TMPMSDEDE--EAVETVRRRLIAD----DG-AQKSSASTT 66
           MGNC    +S ++  D    T+    ED+    ++T  + ++ D    DG    SS  T 
Sbjct: 1   MGNCLRHQSSTQWAGDDWGTTVADYGEDDGFSDIKTKEKGIVGDHHQKDGFITTSSTPTV 60

Query: 67  MELKIRITKRELEKLLSKVDVEELPVRELLSQLIDVGDAFESTHRRSWQPSLQSIPEVN 111
            E+K++ITK++LE+LL +VDV+EL V+++L+QLI+V + F+ T++RSW+P+LQSIPEVN
Sbjct: 61  HEVKVKITKKQLEELLGRVDVKELSVQQVLAQLINVSNQFDETNQRSWRPALQSIPEVN 119

[Close]

BLAST of Lsi05G005870 vs. TrEMBL
Match: A0A0A0L7M3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G076570 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.2e-12
Identity = 54/115 (46.96%), Postives = 70/115 (60.87%), Query Frame = 1


Query: 7   MGNCTSNKYLADTMPMSDEDEEAVETVRRRLIADDGAQKSS-ASTTMELKIRITKRELEK 66
           MGNC S+  L         DEEA+E ++RR++A D   +SS A+TT E+KI+ITK+ELE 
Sbjct: 1   MGNCVSSNCLCGKPTRILSDEEALEMMKRRIMAYDETPRSSKAATTTEVKIKITKKELEM 60

Query: 67  LLSKVDV----EELPVRELLS------QLIDVGDAFESTHRRSWQPSLQSIPEVN 111
           LL    V    +ELP     S      Q ID+ DAFE    RSW+PSLQSIPE++
Sbjct: 61  LLGNYTVVEVKDELPSAHFFSQPIVELQPIDIDDAFE-MQPRSWRPSLQSIPEMD 114

[Close]

BLAST of Lsi05G005870 vs. TrEMBL
Match: F6HEJ8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0090g00360 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.7e-11
Identity = 38/68 (55.88%), Postives = 55/68 (80.88%), Query Frame = 1


Query: 43  AQKSSASTTMELKIRITKRELEKLLSKVDVEELPVRELLSQLIDVGDAFESTHRRSWQPS 102
           +  SS+STT E+K++I+K++LE+LL KVDV+ L V ++L  L++V D FE T +RSW+P+
Sbjct: 59  SSSSSSSTTTEVKVKISKKQLEELLGKVDVQGLTVHQVLQHLMNVSDRFE-TEQRSWRPA 118

Query: 103 LQSIPEVN 111
           LQSIPEVN
Sbjct: 119 LQSIPEVN 125

[Close]

BLAST of Lsi05G005870 vs. TrEMBL
Match: A0A061F4T5_THECC (Expression of the gene is downregulated in the presence of paraquat, putative OS=Theobroma cacao GN=TCM_030889 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.5e-11
Identity = 37/65 (56.92%), Postives = 58/65 (89.23%), Query Frame = 1


Query: 46  SSASTTMELKIRITKRELEKLLSKVDVEELPVRELLSQLIDVGDAFESTHRRSWQPSLQS 105
           +S++TT E+K++ITK++LE+LL +VDV+EL V+++L+QLI+V + +E T +RSW+P+LQS
Sbjct: 64  TSSATTHEVKVKITKKQLEELLGRVDVKELSVQQVLAQLINVRNQYE-TSQRSWRPALQS 123

Query: 106 IPEVN 111
           IPEVN
Sbjct: 124 IPEVN 127

[Close]

BLAST of Lsi05G005870 vs. TAIR10
Match: AT4G21920.1 (AT4G21920.1 unknown protein)

HSP 1 Score: 52.4 bits (124), Expect = 2.1e-07
Identity = 43/129 (33.33%), Postives = 62/129 (48.06%), Query Frame = 1


Query: 7   MGNCTSNKYLADTMPMSDEDEEAVETVRRRLIA------DDGAQ------------KSSA 66
           MGNC        T    D++    +  RRR         DDG +             SS+
Sbjct: 1   MGNCICVTEKTTTSWSGDDNGSYNKRRRRRRSTVVHDDNDDGEKLLGETSNVTSTSSSSS 60

Query: 67  STTMELKIRITKRELEKLLSKVDVEELPVRELLSQLI-DVGDAF------ESTHRRSWQP 111
           S   E+KIRITK+ELE L+  + ++ L   E+LS+LI + GD         + H + W+P
Sbjct: 61  SERREIKIRITKKELEDLMRNIGLKSLTAEEILSKLIFEGGDQIGFSAVDVTNHHQPWKP 120

[Close]

BLAST of Lsi05G005870 vs. TAIR10
Match: AT3G20340.1 (AT3G20340.1 Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.)

HSP 1 Score: 47.8 bits (112), Expect = 5.2e-06
Identity = 27/66 (40.91%), Postives = 43/66 (65.15%), Query Frame = 1


Query: 47  SASTTMELKIRITKRELEKLLSKVDVEELPVRE--LLSQLIDVGDAFESTHRRSWQPSLQ 106
           S+  + E+KIR+TK++L  LLSKV+V +L  ++      +++     E+  +R W+P LQ
Sbjct: 50  SSVPSHEIKIRLTKKQLHDLLSKVNVHDLTFQQQTFSCPILNNRGYEEANQQRLWRPVLQ 109

Query: 107 SIPEVN 111
           SIPEVN
Sbjct: 110 SIPEVN 115

[Close]

BLAST of Lsi05G005870 vs. NCBI nr
Match: gi|659126877|ref|XP_008463409.1| (PREDICTED: uncharacterized protein LOC103501580 [Cucumis melo])

HSP 1 Score: 167.5 bits (423), Expect = 1.3e-38
Identity = 85/104 (81.73%), Postives = 94/104 (90.38%), Query Frame = 1


Query: 7   MGNCTSNKYLADTMPMSDEDEEAVETVRRRLIADDGAQKSSASTTMELKIRITKRELEKL 66
           MGNCTSNKYLA+TMPMSD++EE  E +RRRL+ +  AQK SASTT ELKIRITK+ELEKL
Sbjct: 1   MGNCTSNKYLAETMPMSDDEEEVEEMLRRRLVVESRAQKCSASTTTELKIRITKKELEKL 60

Query: 67  LSKVDVEELPVRELLSQLIDVGDAFESTHRRSWQPSLQSIPEVN 111
           L KVD+EELPV ELLS+LIDVGDAFESTHRRSWQPSLQSIPEVN
Sbjct: 61  LCKVDMEELPVAELLSKLIDVGDAFESTHRRSWQPSLQSIPEVN 104

[Close]

BLAST of Lsi05G005870 vs. NCBI nr
Match: gi|700200987|gb|KGN56120.1| (hypothetical protein Csa_3G076560 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 3.1e-37
Identity = 85/105 (80.95%), Postives = 94/105 (89.52%), Query Frame = 1


Query: 7   MGNCTSNKYLADTM-PMSDEDEEAVETVRRRLIADDGAQKSSASTTMELKIRITKRELEK 66
           MGNCTSNKYLA+T+ PMSD+DEE  E +RRRL+  +GAQK SASTT ELKIRITKRELEK
Sbjct: 1   MGNCTSNKYLAETIVPMSDDDEEVEEMLRRRLVVKNGAQKCSASTTTELKIRITKRELEK 60

Query: 67  LLSKVDVEELPVRELLSQLIDVGDAFESTHRRSWQPSLQSIPEVN 111
           LL KVDVEELPV ELLS+LIDVGD FESTH+RSW+PSLQSIPEVN
Sbjct: 61  LLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQSIPEVN 105

[Close]

BLAST of Lsi05G005870 vs. NCBI nr
Match: gi|823222168|ref|XP_012443791.1| (PREDICTED: uncharacterized protein LOC105768423 [Gossypium raimondii])

HSP 1 Score: 80.5 bits (197), Expect = 2.0e-12
Identity = 50/119 (42.02%), Postives = 79/119 (66.39%), Query Frame = 1


Query: 7   MGNC----TSNKYLAD----TMPMSDEDE--EAVETVRRRLIAD----DG-AQKSSASTT 66
           MGNC    +S ++  D    T+    ED+    ++T  + ++ D    DG    SS  T 
Sbjct: 1   MGNCLRHQSSTQWAGDDWGTTVADYGEDDGFSDIKTKEKGIVGDHHQKDGFITTSSTPTV 60

Query: 67  MELKIRITKRELEKLLSKVDVEELPVRELLSQLIDVGDAFESTHRRSWQPSLQSIPEVN 111
            E+K++ITK++LE+LL +VDV+EL V+++L+QLI+V + F+ T++RSW+P+LQSIPEVN
Sbjct: 61  HEVKVKITKKQLEELLGRVDVKELSVQQVLAQLINVSNQFDETNQRSWRPALQSIPEVN 119

[Close]

BLAST of Lsi05G005870 vs. NCBI nr
Match: gi|778688380|ref|XP_011652736.1| (PREDICTED: uncharacterized protein LOC105435072 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 4.5e-12
Identity = 54/115 (46.96%), Postives = 70/115 (60.87%), Query Frame = 1


Query: 7   MGNCTSNKYLADTMPMSDEDEEAVETVRRRLIADDGAQKSS-ASTTMELKIRITKRELEK 66
           MGNC S+  L         DEEA+E ++RR++A D   +SS A+TT E+KI+ITK+ELE 
Sbjct: 1   MGNCVSSNCLCGKPTRILSDEEALEMMKRRIMAYDETPRSSKAATTTEVKIKITKKELEM 60

Query: 67  LLSKVDV----EELPVRELLS------QLIDVGDAFESTHRRSWQPSLQSIPEVN 111
           LL    V    +ELP     S      Q ID+ DAFE    RSW+PSLQSIPE++
Sbjct: 61  LLGNYTVVEVKDELPSAHFFSQPIVELQPIDIDDAFE-MQPRSWRPSLQSIPEMD 114

[Close]

BLAST of Lsi05G005870 vs. NCBI nr
Match: gi|225460987|ref|XP_002278220.1| (PREDICTED: uncharacterized protein LOC100260689 [Vitis vinifera])

HSP 1 Score: 76.3 bits (186), Expect = 3.8e-11
Identity = 38/68 (55.88%), Postives = 55/68 (80.88%), Query Frame = 1


Query: 43  AQKSSASTTMELKIRITKRELEKLLSKVDVEELPVRELLSQLIDVGDAFESTHRRSWQPS 102
           +  SS+STT E+K++I+K++LE+LL KVDV+ L V ++L  L++V D FE T +RSW+P+
Sbjct: 59  SSSSSSSTTTEVKVKISKKQLEELLGKVDVQGLTVHQVLQHLMNVSDRFE-TEQRSWRPA 118

Query: 103 LQSIPEVN 111
           LQSIPEVN
Sbjct: 119 LQSIPEVN 125

The following BLAST results are available for this feature:

BLAST of Lsi05G005870 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G005870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2D8_CUCSA	2.2e-37	80.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G076560 PE=4 SV=1	[more]
A0A0D2U1A6_GOSRA	1.4e-12	42.02	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G438000 PE=4 SV=1	[more]
A0A0A0L7M3_CUCSA	3.2e-12	46.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G076570 PE=4 SV=1	[more]
F6HEJ8_VITVI	2.7e-11	55.88	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0090g00360 PE=4 SV=...	[more]
A0A061F4T5_THECC	3.5e-11	56.92	Expression of the gene is downregulated in the presence of paraquat, putative OS...	[more]

BLAST of Lsi05G005870 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21920.1	2.1e-07	33.33	unknown protein	[more]
AT3G20340.1	5.2e-06	40.91	Expression of the gene is downregulated in the presence of paraquat,...	[more]

BLAST of Lsi05G005870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126877\|ref\|XP_008463409.1\|	1.3e-38	81.73	PREDICTED: uncharacterized protein LOC103501580 [Cucumis melo]	[more]
gi\|700200987\|gb\|KGN56120.1\|	3.1e-37	80.95	hypothetical protein Csa_3G076560 [Cucumis sativus]	[more]
gi\|823222168\|ref\|XP_012443791.1\|	2.0e-12	42.02	PREDICTED: uncharacterized protein LOC105768423 [Gossypium raimondii]	[more]
gi\|778688380\|ref\|XP_011652736.1\|	4.5e-12	46.96	PREDICTED: uncharacterized protein LOC105435072 [Cucumis sativus]	[more]
gi\|225460987\|ref\|XP_002278220.1\|	3.8e-11	55.88	PREDICTED: uncharacterized protein LOC100260689 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G005870.1	Lsi05G005870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33647	FAMILY NOT NAMED	coord: 8..110 score: 3.9
None	No IPR available	PANTHER	PTHR33647:SF5	SUBFAMILY NOT NAMED	coord: 8..110 score: 3.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G005870	Csa3G076560	Cucumber (Chinese Long) v2	culsiB198
Lsi05G005870	CSPI03G05050	Wild cucumber (PI 183967)	cpilsiB197
Lsi05G005870	Cucsa.060030	Cucumber (Gy14) v1	cgylsiB048
Lsi05G005870	CmaCh16G008680	Cucurbita maxima (Rimu)	cmalsiB315
Lsi05G005870	CmaCh04G009600	Cucurbita maxima (Rimu)	cmalsiB691
Lsi05G005870	CmoCh16G008930	Cucurbita moschata (Rifu)	cmolsiB301
Lsi05G005870	Cla005317	Watermelon (97103) v1	lsiwmB348
Lsi05G005870	MELO3C025367	Melon (DHL92) v3.5.1	lsimeB370
Lsi05G005870	ClCG10G005340	Watermelon (Charleston Gray)	lsiwcgB318
Lsi05G005870	MELO3C025367.2	Melon (DHL92) v3.6.1	lsimedB388
Lsi05G005870	Cla97C10G189580	Watermelon (97103) v2	lsiwmbB322
Lsi05G005870	Bhi11G000471	Wax gourd	lsiwgoB410
Lsi05G005870	Cp4.1LG01g08040	Cucurbita pepo (Zucchini)	cpelsiB370
Lsi05G005870	Cp4.1LG14g07320	Cucurbita pepo (Zucchini)	cpelsiB175
Lsi05G005870	CsGy3G005120	Cucumber (Gy14) v2	cgyblsiB183
Lsi05G005870	Carg00075	Silver-seed gourd	carlsiB616
Lsi05G005870	CsaV3_3G005050	Cucumber (Chinese Long) v3	cuclsiB217

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G005870	Cucurbita moschata (Rifu)	cmolsiB306
Lsi05G005870	Cucurbita moschata (Rifu)	cmolsiB684
Lsi05G005870	Cucurbita pepo (Zucchini)	cpelsiB179