Cp4.1LG01g08040 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g08040
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	DUF4228 domain protein
Location	Cp4.1LG01 : 5141666 .. 5141917 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAGAGAAGCTTCATGGCTTACGACGAGGCTCCGGTGGCCTCTGCGACGGCGACCACGACAGAGTTGAAGATCAAGATCACAAAGAGAGAGCTGGAGATGTTATTAGCTAATTATAGTGTGGTGGAGGTGAAGGAAGAGCTGCAGATGGAGCATCTGTTGTCGCCACTGTTTTACGTCGATGGTACGCTCGAGATGCAGCCACGATCGTGGCAGCCTTCCCTGCAGAGTATCCCTGAGGCGGATTGA

mRNA sequence

ATGGTGAAGAGAAGCTTCATGGCTTACGACGAGGCTCCGGTGGCCTCTGCGACGGCGACCACGACAGAGTTGAAGATCAAGATCACAAAGAGAGAGCTGGAGATGTTATTAGCTAATTATAGTGTGGTGGAGGTGAAGGAAGAGCTGCAGATGGAGCATCTGTTGTCGCCACTGTTTTACGTCGATGGTACGCTCGAGATGCAGCCACGATCGTGGCAGCCTTCCCTGCAGAGTATCCCTGAGGCGGATTGA

Coding sequence (CDS)

ATGGTGAAGAGAAGCTTCATGGCTTACGACGAGGCTCCGGTGGCCTCTGCGACGGCGACCACGACAGAGTTGAAGATCAAGATCACAAAGAGAGAGCTGGAGATGTTATTAGCTAATTATAGTGTGGTGGAGGTGAAGGAAGAGCTGCAGATGGAGCATCTGTTGTCGCCACTGTTTTACGTCGATGGTACGCTCGAGATGCAGCCACGATCGTGGCAGCCTTCCCTGCAGAGTATCCCTGAGGCGGATTGA

Protein sequence

MVKRSFMAYDEAPVASATATTTELKIKITKRELEMLLANYSVVEVKEELQMEHLLSPLFYVDGTLEMQPRSWQPSLQSIPEAD

Homology

[Close]

BLAST of Cp4.1LG01g08040 vs. TrEMBL
Match: A0A0A0L7M3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G076570 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.4e-19
Identity = 56/89 (62.92%), Postives = 65/89 (73.03%), Query Frame = 1


Query: 1   MVKRSFMAYDEAPVASATATTTELKIKITKRELEMLLANYSVVEVKEELQMEHLLS-PL- 60
           M+KR  MAYDE P +S  ATTTE+KIKITK+ELEMLL NY+VVEVK+EL   H  S P+ 
Sbjct: 26  MMKRRIMAYDETPRSSKAATTTEVKIKITKKELEMLLGNYTVVEVKDELPSAHFFSQPIV 85

Query: 61  ----FYVDGTLEMQPRSWQPSLQSIPEAD 84
                 +D   EMQPRSW+PSLQSIPE D
Sbjct: 86  ELQPIDIDDAFEMQPRSWRPSLQSIPEMD 114

[Close]

BLAST of Cp4.1LG01g08040 vs. TrEMBL
Match: A0A0A0L2D8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G076560 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-06
Identity = 42/84 (50.00%), Postives = 51/84 (60.71%), Query Frame = 1


Query: 1   MVKRSFMAYDEAPVASATATTTELKIKITKRELEMLLANYSVVEVKEELQMEHLLSPLFY 60
           M++R  +  + A   S  +TTTELKI+ITKRELE LL    V    EEL +  LLS L  
Sbjct: 27  MLRRRLVVKNGAQKCS-ASTTTELKIRITKRELEKLLCKVDV----EELPVTELLSKLID 86

Query: 61  VDGTLE-MQPRSWQPSLQSIPEAD 84
           V  T E    RSW+PSLQSIPE +
Sbjct: 87  VGDTFESTHQRSWRPSLQSIPEVN 105

[Close]

BLAST of Cp4.1LG01g08040 vs. TrEMBL
Match: B9SAC3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0584600 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.7e-06
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 1


Query: 14  VASATATTTELKIKITKRELEMLLANYSVVEVKEELQMEHLLSPLFYV-DGTLEMQPRSW 73
           ++SAT T+TE+KIKITK++LE LL    +    +EL +E +L+ L  V D + E   RSW
Sbjct: 50  ISSATVTSTEVKIKITKKQLEELLGRVDM----KELSIEQVLAQLMKVGDPSFETHQRSW 109

Query: 74  QPSLQSIPE 82
           +P+LQSIPE
Sbjct: 110 RPNLQSIPE 114

[Close]

BLAST of Cp4.1LG01g08040 vs. NCBI nr
Match: gi|659126879|ref|XP_008463410.1| (PREDICTED: uncharacterized protein LOC103501581 [Cucumis melo])

HSP 1 Score: 102.4 bits (254), Expect = 3.8e-19
Identity = 59/93 (63.44%), Postives = 66/93 (70.97%), Query Frame = 1


Query: 1   MVKRSFMAY-DEAP---------VASATATTTELKIKITKRELEMLLANYSVVEVKEELQ 60
           M+KR+ MAY DE P         VA+ T TTTE+KIKITKRELEMLL NY VVEVKEEL 
Sbjct: 25  MMKRTVMAYNDETPKIDETPRSSVAATTTTTTEVKIKITKRELEMLLGNYKVVEVKEELS 84

Query: 61  MEHLLSPLFYVDGTLEMQPRSWQPSLQSIPEAD 84
               LS L  +D  +EMQPRSW+PSLQSIPE D
Sbjct: 85  TTQFLSRLIDIDEGIEMQPRSWRPSLQSIPETD 117

[Close]

BLAST of Cp4.1LG01g08040 vs. NCBI nr
Match: gi|778688380|ref|XP_011652736.1| (PREDICTED: uncharacterized protein LOC105435072 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 4.9e-19
Identity = 56/89 (62.92%), Postives = 65/89 (73.03%), Query Frame = 1


Query: 1   MVKRSFMAYDEAPVASATATTTELKIKITKRELEMLLANYSVVEVKEELQMEHLLS-PL- 60
           M+KR  MAYDE P +S  ATTTE+KIKITK+ELEMLL NY+VVEVK+EL   H  S P+ 
Sbjct: 26  MMKRRIMAYDETPRSSKAATTTEVKIKITKKELEMLLGNYTVVEVKDELPSAHFFSQPIV 85

Query: 61  ----FYVDGTLEMQPRSWQPSLQSIPEAD 84
                 +D   EMQPRSW+PSLQSIPE D
Sbjct: 86  ELQPIDIDDAFEMQPRSWRPSLQSIPEMD 114

[Close]

BLAST of Cp4.1LG01g08040 vs. NCBI nr
Match: gi|700200987|gb|KGN56120.1| (hypothetical protein Csa_3G076560 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 2.1e-06
Identity = 42/84 (50.00%), Postives = 51/84 (60.71%), Query Frame = 1


Query: 1   MVKRSFMAYDEAPVASATATTTELKIKITKRELEMLLANYSVVEVKEELQMEHLLSPLFY 60
           M++R  +  + A   S  +TTTELKI+ITKRELE LL    V    EEL +  LLS L  
Sbjct: 27  MLRRRLVVKNGAQKCS-ASTTTELKIRITKRELEKLLCKVDV----EELPVTELLSKLID 86

Query: 61  VDGTLE-MQPRSWQPSLQSIPEAD 84
           V  T E    RSW+PSLQSIPE +
Sbjct: 87  VGDTFESTHQRSWRPSLQSIPEVN 105

[Close]

BLAST of Cp4.1LG01g08040 vs. NCBI nr
Match: gi|255563885|ref|XP_002522942.1| (PREDICTED: uncharacterized protein LOC8260822 [Ricinus communis])

HSP 1 Score: 58.2 bits (139), Expect = 8.2e-06
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 1


Query: 14  VASATATTTELKIKITKRELEMLLANYSVVEVKEELQMEHLLSPLFYV-DGTLEMQPRSW 73
           ++SAT T+TE+KIKITK++LE LL    +    +EL +E +L+ L  V D + E   RSW
Sbjct: 50  ISSATVTSTEVKIKITKKQLEELLGRVDM----KELSIEQVLAQLMKVGDPSFETHQRSW 109

Query: 74  QPSLQSIPE 82
           +P+LQSIPE
Sbjct: 110 RPNLQSIPE 114

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g08040 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g08040 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7M3_CUCSA	3.4e-19	62.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G076570 PE=4 SV=1	[more]
A0A0A0L2D8_CUCSA	1.5e-06	50.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G076560 PE=4 SV=1	[more]
B9SAC3_RICCO	5.7e-06	49.28	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0584600 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g08040 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g08040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126879\|ref\|XP_008463410.1\|	3.8e-19	63.44	PREDICTED: uncharacterized protein LOC103501581 [Cucumis melo]	[more]
gi\|778688380\|ref\|XP_011652736.1\|	4.9e-19	62.92	PREDICTED: uncharacterized protein LOC105435072 [Cucumis sativus]	[more]
gi\|700200987\|gb\|KGN56120.1\|	2.1e-06	50.00	hypothetical protein Csa_3G076560 [Cucumis sativus]	[more]
gi\|255563885\|ref\|XP_002522942.1\|	8.2e-06	49.28	PREDICTED: uncharacterized protein LOC8260822 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g08040.1	Cp4.1LG01g08040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33647	FAMILY NOT NAMED	coord: 7..83 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g08040	Cucsa.060020	Cucumber (Gy14) v1	cgycpeB0077
Cp4.1LG01g08040	CmaCh04G009600	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g08040	Cla005317	Watermelon (97103) v1	cpewmB386
Cp4.1LG01g08040	Csa3G076560	Cucumber (Chinese Long) v2	cpecuB393
Cp4.1LG01g08040	MELO3C025368	Melon (DHL92) v3.5.1	cpemeB413
Cp4.1LG01g08040	ClCG10G005340	Watermelon (Charleston Gray)	cpewcgB349
Cp4.1LG01g08040	CSPI03G05050	Wild cucumber (PI 183967)	cpecpiB392
Cp4.1LG01g08040	Lsi05G005870	Bottle gourd (USVL1VR-Ls)	cpelsiB370
Cp4.1LG01g08040	MELO3C025367.2	Melon (DHL92) v3.6.1	cpemedB484
Cp4.1LG01g08040	CsaV3_3G005050	Cucumber (Chinese Long) v3	cpecucB0491
Cp4.1LG01g08040	Bhi11G000471	Wax gourd	cpewgoB0484
Cp4.1LG01g08040	CsGy3G005120	Cucumber (Gy14) v2	cgybcpeB369
Cp4.1LG01g08040	Carg00075	Silver-seed gourd	carcpeB0938

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g08040	Cucurbita moschata (Rifu)	cmocpeB673