Carg00075 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00075
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	DUF4228 domain protein
Location	Cucurbita_argyrosperma_scaffold_001 : 319629 .. 319952 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAACTGCGTTTCCAACAAAATTTTCTGTGGGAAATCATCAAGAATTAGTGATGAAGAGGCTCTGGAGATGGTGAAGAGAAGCCTCATGGCCTACGACGAGGCTCCGGTGGCCTCTGTGACGGCGACCACGACAGAGTTGAAGATCAAGATCACAAAGAGAGAGCTGGAGATGTTACTAGCTAATTATAATGTGGTAGAGGTGAAGGAAGAGCTGCAGACAGAGCAGCTGTTGTCGCCACTGTTTTACGTCGATGGTACGCTCGAGATGCAGCCACGATCGTGGCAGCCTTCCCTGCAGAGTATCCCTGAGGCGGATTGA

mRNA sequence

ATGGGAAACTGCGTTTCCAACAAAATTTTCTGTGGGAAATCATCAAGAATTAGTGATGAAGAGGCTCTGGAGATGGTGAAGAGAAGCCTCATGGCCTACGACGAGGCTCCGGTGGCCTCTGTGACGGCGACCACGACAGAGTTGAAGATCAAGATCACAAAGAGAGAGCTGGAGATGTTACTAGCTAATTATAATGTGGTAGAGGTGAAGGAAGAGCTGCAGACAGAGCAGCTGTTGTCGCCACTGTTTTACGTCGATGGTACGCTCGAGATGCAGCCACGATCGTGGCAGCCTTCCCTGCAGAGTATCCCTGAGGCGGATTGA

Coding sequence (CDS)

ATGGGAAACTGCGTTTCCAACAAAATTTTCTGTGGGAAATCATCAAGAATTAGTGATGAAGAGGCTCTGGAGATGGTGAAGAGAAGCCTCATGGCCTACGACGAGGCTCCGGTGGCCTCTGTGACGGCGACCACGACAGAGTTGAAGATCAAGATCACAAAGAGAGAGCTGGAGATGTTACTAGCTAATTATAATGTGGTAGAGGTGAAGGAAGAGCTGCAGACAGAGCAGCTGTTGTCGCCACTGTTTTACGTCGATGGTACGCTCGAGATGCAGCCACGATCGTGGCAGCCTTCCCTGCAGAGTATCCCTGAGGCGGATTGA

Protein sequence

MGNCVSNKIFCGKSSRISDEEALEMVKRSLMAYDEAPVASVTATTTELKIKITKRELEMLLANYNVVEVKEELQTEQLLSPLFYVDGTLEMQPRSWQPSLQSIPEAD

Homology

[Close]

BLAST of Carg00075 vs. NCBI nr
Match: XP_011652736.1 (PREDICTED: uncharacterized protein LOC105435072 [Cucumis sativus] >KGN56121.1 hypothetical protein Csa_3G076570 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 1.5e-27
Identity = 73/114 (64.04%), Postives = 85/114 (74.56%), Query Frame = 0


Query: 1   MGNCVSNKIFCGKSSRI-SDEEALEMVKRSLMAYDEAPVASVTATTTELKIKITKRELEM 60
           MGNCVS+   CGK +RI SDEEALEM+KR +MAYDE P +S  ATTTE+KIKITK+ELEM
Sbjct: 1   MGNCVSSNCLCGKPTRILSDEEALEMMKRRIMAYDETPRSSKAATTTEVKIKITKKELEM 60

Query: 61  LLANYNVVEVKEELQTEQLLS-PL-----FYVDGTLEMQPRSWQPSLQSIPEAD 108
           LL NY VVEVK+EL +    S P+       +D   EMQPRSW+PSLQSIPE D
Sbjct: 61  LLGNYTVVEVKDELPSAHFFSQPIVELQPIDIDDAFEMQPRSWRPSLQSIPEMD 114

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BLAST of Carg00075 vs. NCBI nr
Match: XP_016903026.1 (PREDICTED: uncharacterized protein LOC103501581 [Cucumis melo])

HSP 1 Score: 125.9 bits (315), Expect = 8.0e-26
Identity = 72/117 (61.54%), Postives = 81/117 (69.23%), Query Frame = 0


Query: 1   MGNCVSNKIFCGKSSRISDEEALEMVKRSLMAY-------DEAPVASVT---ATTTELKI 60
           MGNCVS+K  CGKS+RISDEEALEM+KR++MAY       DE P +SV            
Sbjct: 1   MGNCVSSKYLCGKSTRISDEEALEMMKRTVMAYNDETPKIDETPRSSVAXXXXXXXXXXX 60

Query: 61  KITKRELEMLLANYNVVEVKEELQTEQLLSPLFYVDGTLEMQPRSWQPSLQSIPEAD 108
             TKRELEMLL NY VVEVKEEL T Q LS L  +D  +EMQPRSW+PSLQSIPE D
Sbjct: 61  XXTKRELEMLLGNYKVVEVKEELSTTQFLSRLIDIDEGIEMQPRSWRPSLQSIPETD 117

[Close]

BLAST of Carg00075 vs. NCBI nr
Match: XP_022932152.1 (uncharacterized protein LOC111438472 [Cucurbita moschata])

HSP 1 Score: 75.9 bits (185), Expect = 9.5e-11
Identity = 52/105 (49.52%), Postives = 62/105 (59.05%), Query Frame = 0


Query: 1   MGNCVSNKIFCGKSSRISDEEALEMVKRSLMAYDEAPVASVTATTTELKIKITKRELEML 60
           MGNC SNK          +EE +E VKR L A D    AS   TTTE+KI++TKRELE L
Sbjct: 1   MGNCTSNKYLAETMPMSEEEEVVETVKRKLNADDG---ASRGTTTTEVKIRMTKRELEKL 60

Query: 61  LANYNVVEVKEELQTEQLLSPLFYVDGTLEMQPRSWQPSLQSIPE 106
           L+    VEV+E   TE LL  +   D +     RSW+PSLQSIPE
Sbjct: 61  LSK---VEVEELPVTELLLQMIEVGDESESTHRRSWRPSLQSIPE 99

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BLAST of Carg00075 vs. NCBI nr
Match: XP_022151029.1 (uncharacterized protein LOC111019048 [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 8.0e-10
Identity = 53/109 (48.62%), Postives = 64/109 (58.72%), Query Frame = 0


Query: 1   MGNCVSNKIFCGKSSRISDEEALEMVKRSLMAYDE---APVASVTATTTELKIKITKREL 60
           MGNC SNK     S    +EEA+E VKR L+  D+   A  +S  A TTE+KI+ITKREL
Sbjct: 1   MGNCTSNKYSAEISPMSDEEEAVETVKRRLIPDDDGHGALRSSSLARTTEVKIRITKREL 60

Query: 61  EMLLANYNVVEVKEELQTEQLLSPLFYVDGTLE-MQPRSWQPSLQSIPE 106
           E LL   +V    EEL   +LLS L  V    E    RSW+PSLQ+I E
Sbjct: 61  EKLLRKVDV----EELPVTELLSQLIDVGDAFESTHRRSWRPSLQTIHE 105

[Close]

BLAST of Carg00075 vs. NCBI nr
Match: XP_022985276.1 (uncharacterized protein LOC111483315 [Cucurbita maxima])

HSP 1 Score: 67.0 bits (162), Expect = 4.4e-08
Identity = 48/107 (44.86%), Postives = 60/107 (56.07%), Query Frame = 0


Query: 1   MGNCVSNKIFCGKSSRISDEEALEMVKRSLMAYDEAPVAS--VTATTTELKIKITKRELE 60
           MGNC SNK          +EE +E +KR L A D A  +S        E+KI++TKRELE
Sbjct: 1   MGNCTSNKYLAETMPMSEEEELVETLKRKLNADDGASRSSRGTXXXXXEVKIRMTKRELE 60

Query: 61  MLLANYNVVEVKEELQTEQLLSPLFYVDGTLEMQPRSWQPSLQSIPE 106
            LL+    VEV+E   TE LL  +   D +     RSW+PSLQSIPE
Sbjct: 61  KLLSK---VEVEELPVTELLLQLIEVGDESESTHRRSWRPSLQSIPE 104

[Close]

BLAST of Carg00075 vs. TAIR10
Match: AT4G21920.1 (unknown protein)

HSP 1 Score: 42.4 bits (98), Expect = 2.1e-04
Identity = 30/71 (42.25%), Postives = 40/71 (56.34%), Query Frame = 0


Query: 47  ELKIKITKRELEMLLANYNVVEVKEELQTEQLLSPLFY----------VDGTLEMQPRSW 106
           E+KI+ITK+ELE L+ N  +    + L  E++LS L +          VD T   QP  W
Sbjct: 65  EIKIRITKKELEDLMRNIGL----KSLTAEEILSKLIFEGGDQIGFSAVDVTNHHQP--W 124

Query: 107 QPSLQSIPEAD 108
           +P LQSIPE D
Sbjct: 125 KPVLQSIPEMD 129

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BLAST of Carg00075 vs. TrEMBL
Match: tr|A0A0A0L7M3|A0A0A0L7M3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G076570 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 9.6e-28
Identity = 73/114 (64.04%), Postives = 85/114 (74.56%), Query Frame = 0


Query: 1   MGNCVSNKIFCGKSSRI-SDEEALEMVKRSLMAYDEAPVASVTATTTELKIKITKRELEM 60
           MGNCVS+   CGK +RI SDEEALEM+KR +MAYDE P +S  ATTTE+KIKITK+ELEM
Sbjct: 1   MGNCVSSNCLCGKPTRILSDEEALEMMKRRIMAYDETPRSSKAATTTEVKIKITKKELEM 60

Query: 61  LLANYNVVEVKEELQTEQLLS-PL-----FYVDGTLEMQPRSWQPSLQSIPEAD 108
           LL NY VVEVK+EL +    S P+       +D   EMQPRSW+PSLQSIPE D
Sbjct: 61  LLGNYTVVEVKDELPSAHFFSQPIVELQPIDIDDAFEMQPRSWRPSLQSIPEMD 114

[Close]

BLAST of Carg00075 vs. TrEMBL
Match: tr|A0A1S4E465|A0A1S4E465_CUCME (uncharacterized protein LOC103501581 OS=Cucumis melo OX=3656 GN=LOC103501581 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.3e-26
Identity = 72/117 (61.54%), Postives = 81/117 (69.23%), Query Frame = 0


Query: 1   MGNCVSNKIFCGKSSRISDEEALEMVKRSLMAY-------DEAPVASVT---ATTTELKI 60
           MGNCVS+K  CGKS+RISDEEALEM+KR++MAY       DE P +SV            
Sbjct: 1   MGNCVSSKYLCGKSTRISDEEALEMMKRTVMAYNDETPKIDETPRSSVAXXXXXXXXXXX 60

Query: 61  KITKRELEMLLANYNVVEVKEELQTEQLLSPLFYVDGTLEMQPRSWQPSLQSIPEAD 108
             TKRELEMLL NY VVEVKEEL T Q LS L  +D  +EMQPRSW+PSLQSIPE D
Sbjct: 61  XXTKRELEMLLGNYKVVEVKEELSTTQFLSRLIDIDEGIEMQPRSWRPSLQSIPETD 117

[Close]

BLAST of Carg00075 vs. TrEMBL
Match: tr|A0A1S3CJ77|A0A1S3CJ77_CUCME (uncharacterized protein LOC103501580 OS=Cucumis melo OX=3656 GN=LOC103501580 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.2e-07
Identity = 47/109 (43.12%), Postives = 59/109 (54.13%), Query Frame = 0


Query: 1   MGNCVSNKIFCGKSSRISDEEALEMVKRSLMAYDEAPVASVTA-TTTELKIKITKRELEM 60
           MGNC SNK +  ++  +SD               E+     +A TTTELKI+ITK+ELE 
Sbjct: 1   MGNCTSNK-YLAETMPMSDXXXXXXXXXXXXXXXESRAQKCSASTTTELKIRITKKELEK 60

Query: 61  LLANYNVVEVKEELQTEQLLSPLFYVDGTLE-MQPRSWQPSLQSIPEAD 108
           LL   ++    EEL   +LLS L  V    E    RSWQPSLQSIPE +
Sbjct: 61  LLCKVDM----EELPVAELLSKLIDVGDAFESTHRRSWQPSLQSIPEVN 104

[Close]

BLAST of Carg00075 vs. TrEMBL
Match: tr|G7IXN7|G7IXN7_MEDTR (DUF4228 domain protein OS=Medicago truncatula OX=3880 GN=11424619 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.7e-06
Identity = 41/107 (38.32%), Postives = 59/107 (55.14%), Query Frame = 0


Query: 1   MGNCVSNKIFCGKSSRISDEEALEMVKRSLMAYDEAPVASVTATTTELKIKITKRELEML 60
           MGNC+ ++ +        D +A E    +   Y  A        TTE+KIKITK++LE L
Sbjct: 1   MGNCMKHQKYATDDEDDWDFQASEGDSPAKSNYTGA------KATTEVKIKITKKQLEEL 60

Query: 61  LANYNVVEVKEELQTEQLLSPLFYVDGTLEMQPRSWQPSLQSIPEAD 108
           L+  ++    +EL+ EQ+L+ L       E   RSW+P+LQSIPEAD
Sbjct: 61  LSKVDI----KELRVEQVLAQLMNHSNGYESLQRSWRPALQSIPEAD 97

[Close]

BLAST of Carg00075 vs. TrEMBL
Match: tr|G7IXN1|G7IXN1_MEDTR (DUF4228 domain protein OS=Medicago truncatula OX=3880 GN=11443525 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.9e-06
Identity = 39/107 (36.45%), Postives = 59/107 (55.14%), Query Frame = 0


Query: 1   MGNCVSNKIFCGKSSRISDEEALEMVKRSLMAYDEAPVASVTATTTELKIKITKRELEML 60
           MGNC+ N+     S + + ++     + S   Y      +   TTTE+KIKITK++LE L
Sbjct: 1   MGNCLKNQ----SSIKYATDDDEWDFQASEGDYTSKSNGAAAKTTTEVKIKITKKQLEEL 60

Query: 61  LANYNVVEVKEELQTEQLLSPLFYVDGTLEMQPRSWQPSLQSIPEAD 108
           L+  ++     EL+ EQ+L+ L       +   RSW+P+LQSIPE D
Sbjct: 61  LSKVDI----RELRVEQVLAQLMNHSNGYQSLQRSWRPALQSIPEVD 99

The following BLAST results are available for this feature:

BLAST of Carg00075 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652736.1	1.5e-27	64.04	PREDICTED: uncharacterized protein LOC105435072 [Cucumis sativus] >KGN56121.1 hy...	[more]
XP_016903026.1	8.0e-26	61.54	PREDICTED: uncharacterized protein LOC103501581 [Cucumis melo]	[more]
XP_022932152.1	9.5e-11	49.52	uncharacterized protein LOC111438472 [Cucurbita moschata]	[more]
XP_022151029.1	8.0e-10	48.62	uncharacterized protein LOC111019048 [Momordica charantia]	[more]
XP_022985276.1	4.4e-08	44.86	uncharacterized protein LOC111483315 [Cucurbita maxima]	[more]

BLAST of Carg00075 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21920.1	2.1e-04	42.25	unknown protein	[more]

BLAST of Carg00075 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg00075 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L7M3\|A0A0A0L7M3_CUCSA	9.6e-28	64.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G076570 PE=4 SV=1	[more]
tr\|A0A1S4E465\|A0A1S4E465_CUCME	5.3e-26	61.54	uncharacterized protein LOC103501581 OS=Cucumis melo OX=3656 GN=LOC103501581 PE=...	[more]
tr\|A0A1S3CJ77\|A0A1S3CJ77_CUCME	3.2e-07	43.12	uncharacterized protein LOC103501580 OS=Cucumis melo OX=3656 GN=LOC103501580 PE=...	[more]
tr\|G7IXN7\|G7IXN7_MEDTR	4.7e-06	38.32	DUF4228 domain protein OS=Medicago truncatula OX=3880 GN=11424619 PE=2 SV=1	[more]
tr\|G7IXN1\|G7IXN1_MEDTR	7.9e-06	36.45	DUF4228 domain protein OS=Medicago truncatula OX=3880 GN=11443525 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00075-RA	Carg00075-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33647	FAMILY NOT NAMED	coord: 1..106

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg00075	Cla005317	Watermelon (97103) v1	carwmB0659
Carg00075	Csa3G076560	Cucumber (Chinese Long) v2	carcuB0684
Carg00075	MELO3C025367	Melon (DHL92) v3.5.1	carmeB0672
Carg00075	ClCG10G005340	Watermelon (Charleston Gray)	carwcgB0641
Carg00075	CSPI03G05050	Wild cucumber (PI 183967)	carcpiB0696
Carg00075	Cucsa.060020	Cucumber (Gy14) v1	carcgyB0738
Carg00075	CmaCh16G008680	Cucurbita maxima (Rimu)	carcmaB0946
Carg00075	CmaCh04G009600	Cucurbita maxima (Rimu)	carcmaB0948
Carg00075	CmoCh16G008930	Cucurbita moschata (Rifu)	carcmoB0921
Carg00075	Lsi05G005870	Bottle gourd (USVL1VR-Ls)	carlsiB616
Carg00075	Cp4.1LG01g08040	Cucurbita pepo (Zucchini)	carcpeB0938
Carg00075	CsGy3G005120	Cucumber (Gy14) v2	carcgybB0659
Carg00075	MELO3C025367.2	Melon (DHL92) v3.6.1	carmedB0684
Carg00075	CsaV3_3G005050	Cucumber (Chinese Long) v3	carcucB0698
Carg00075	Cla97C10G189580	Watermelon (97103) v2	carwmbB0686
Carg00075	Bhi11G000471	Wax gourd	carwgoB0777

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg00075	Cucurbita maxima (Rimu)	carcmaB0944
Carg00075	Cucurbita moschata (Rifu)	carcmoB0919
Carg00075	Cucurbita moschata (Rifu)	carcmoB0923