CmaCh00G002890 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh00G002890
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Non-specific lipid-transfer protein
Location	Cma_Chr00 : 22612057 .. 22612909 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTGATATAAAAACACACAAAATCGTAAACCCACCAAGTGTTTGTAAAAATTCCCAAGTGAAAAATGTCAGGAATCTACAATCTCCGCTTGATGATCAGTGCACTAACCTTCATCGCCATGCTTACAAGCTCCATGATGGTCGCGCTGTCTCAGAATGTCGACATGGGAAGCTGCATACTGGTGGCGCAGGAGCTATCGCCATGTTTGAGCTTCATCAAAGGCAGCGACGGAGGGTTTCTTGGAGAGAATCCACCGCCGTCGTGCTGCAGTGGCGTTACTAAGTTGGCCGCCGATGCTAAAACGAAGAACGATAAGGTTGATTTGTGCGAGTGTATCAAGAAGAGTTTGTCGATGATCGGAGCTTATGATCCGAATCGCATTCCTTCGATTCCCGAAGGCTGCGGAATTCCAGTTCAAATTCCTCCCATTGACAATTCCACTGACTGCTCAGAGTAATCAAATTAACATTTCCTTTTCCCTTTTCCTTCGCGCCATGAATCTAAAATGCATTTTCAAGGGACAAATTAAAAAGAAAAATGCGTTGGCTATGATATTGGATGCTAATATTTTGGTGTTGGTGTGTATTGGGATGCAGGGTTGAAGGCTTTGAATTTGGAAGTGGCATGTCAAATGAGGTTGGGAATTGCCATCATCAATGATCCCAATCAACATAAACCAAGCCAAAATCCCATATGATGTTCTTAAGTTTCTCTTCGTTTCAAAATAAGATTGAGTCTTGGTCTCAATAATCCTTATTTACTTCTTAATAATACTCTAATAACGATTACCAATAATCATAATTTCATAACCGTTCATCAATTTCTTCCCATTTTAGTATATTTTAAAAATTTC

mRNA sequence

ACTGATATAAAAACACACAAAATCGTAAACCCACCAAGTGTTTGTAAAAATTCCCAAGTGAAAAATGTCAGGAATCTACAATCTCCGCTTGATGATCAGTGCACTAACCTTCATCGCCATGCTTACAAGCTCCATGATGGTCGCGCTGTCTCAGAATGTCGACATGGGAAGCTGCATACTGGTGGCGCAGGAGCTATCGCCATGTTTGAGCTTCATCAAAGGCAGCGACGGAGGGTTTCTTGGAGAGAATCCACCGCCGTCGTGCTGCAGTGGCGTTACTAAGTTGGCCGCCGATGCTAAAACGAAGAACGATAAGGTTGATTTGTGCGAGTGTATCAAGAAGAGTTTGTCGATGATCGGAGCTTATGATCCGAATCGCATTCCTTCGATTCCCGAAGGCTGCGGAATTCCAGTTCAAATTCCTCCCATTGACAATTCCACTGACTGCTCAGAGGTTGAAGGCTTTGAATTTGGAAGTGGCATGTCAAATGAGGTTGGGAATTGCCATCATCAATGATCCCAATCAACATAAACCAAGCCAAAATCCCATATGATGTTCTTAAGTTTCTCTTCGTTTCAAAATAAGATTGAGTCTTGGTCTCAATAATCCTTATTTACTTCTTAATAATACTCTAATAACGATTACCAATAATCATAATTTCATAACCGTTCATCAATTTCTTCCCATTTTAGTATATTTTAAAAATTTC

Coding sequence (CDS)

ATGTCAGGAATCTACAATCTCCGCTTGATGATCAGTGCACTAACCTTCATCGCCATGCTTACAAGCTCCATGATGGTCGCGCTGTCTCAGAATGTCGACATGGGAAGCTGCATACTGGTGGCGCAGGAGCTATCGCCATGTTTGAGCTTCATCAAAGGCAGCGACGGAGGGTTTCTTGGAGAGAATCCACCGCCGTCGTGCTGCAGTGGCGTTACTAAGTTGGCCGCCGATGCTAAAACGAAGAACGATAAGGTTGATTTGTGCGAGTGTATCAAGAAGAGTTTGTCGATGATCGGAGCTTATGATCCGAATCGCATTCCTTCGATTCCCGAAGGCTGCGGAATTCCAGTTCAAATTCCTCCCATTGACAATTCCACTGACTGCTCAGAGGTTGAAGGCTTTGAATTTGGAAGTGGCATGTCAAATGAGGTTGGGAATTGCCATCATCAATGA

Protein sequence

MSGIYNLRLMISALTFIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLGENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTDCSEVEGFEFGSGMSNEVGNCHHQ

Homology

[Close]

BLAST of CmaCh00G002890 vs. Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.3e-13
Identity = 43/124 (34.68%), Postives = 68/124 (54.84%), Query Frame = 1


Query: 8   RLMISALTFIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLGENPPPSC 67
           R   + L  +AM+ + ++VA    +   SC  V+  LSPC+S+ +G+     G  PP +C
Sbjct: 3   RAAATQLVLVAMVAAMLLVATDAAI---SCGQVSSALSPCISYARGN-----GAKPPVAC 62

Query: 68  CSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTD 127
           CSGV +LA  A++  DK   C C+K   + I   +  ++  +P  CG+ V   PI  STD
Sbjct: 63  CSGVKRLAGAAQSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPF-PISMSTD 117

Query: 128 CSEV 132
           C++V
Sbjct: 123 CNKV 117

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BLAST of CmaCh00G002890 vs. Swiss-Prot
Match: NLT22_PARJU (Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.3e-13
Identity = 44/129 (34.11%), Postives = 63/129 (48.84%), Query Frame = 1


Query: 11  ISALTFIAML---TSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLGENPPPSC 70
           ++AL  IA     TSS  +A +     G C  V   + PCL F+KG +     + P  SC
Sbjct: 6   MAALVVIAAALAWTSSAELASAPAPGEGPCGKVVHHIMPCLKFVKGEE-----KEPSKSC 65

Query: 71  CSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTD 130
           CSG  KL+ + KT   K + C+CI  +   I       +  +P+ CGI   +PPI    D
Sbjct: 66  CSGTKKLSEEVKTTEQKREACKCIVAATKGISGIKNELVAEVPKKCGITTTLPPITADFD 125

Query: 131 CSEVEGFEF 137
           CS++E   F
Sbjct: 126 CSKIESTIF 129

[Close]

BLAST of CmaCh00G002890 vs. Swiss-Prot
Match: NLTP6_AMBAR (Non-specific lipid-transfer protein OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-12
Identity = 36/96 (37.50%), Postives = 52/96 (54.17%), Query Frame = 1


Query: 36  SCILVAQELSPCLSFIKGSDGGFLGENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSL 95
           +C  V   L+PC  F+ G +       P  +CC+GV  L    KTK D+V +C CIK+  
Sbjct: 29  TCDTVQNILAPCAGFLTGQE-------PSKACCTGVNNLNNSRKTKADRVAVCNCIKELT 88

Query: 96  SMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTDCSEV 132
             I AYDP R+P +   CG+    P +D + DCS++
Sbjct: 89  KSI-AYDPKRMPLLSTKCGVKPDFPAVDKNLDCSKL 116

[Close]

BLAST of CmaCh00G002890 vs. Swiss-Prot
Match: NLT41_HORVU (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-11
Identity = 44/124 (35.48%), Postives = 66/124 (53.23%), Query Frame = 1


Query: 8   RLMISALTFIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLGENPPPSC 67
           R   S L  +A++ + ++VA    +   SC  V+  LSPC+S+ +G+     G  PP +C
Sbjct: 3   RAAASQLVLVALVAAMLLVAADAAI---SCGQVSSALSPCISYARGN-----GAKPPAAC 62

Query: 68  CSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTD 127
           CSGV +LA  A++  DK   C+CIK   S  G  +  +   IP  CG+ V    I  S D
Sbjct: 63  CSGVKRLAGAAQSTADKQAACKCIK---SAAGGLNAGKAAGIPSMCGVSVPY-AISASVD 114

Query: 128 CSEV 132
           CS++
Sbjct: 123 CSKI 114

[Close]

BLAST of CmaCh00G002890 vs. Swiss-Prot
Match: NLT43_HORVU (Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-11
Identity = 44/124 (35.48%), Postives = 66/124 (53.23%), Query Frame = 1


Query: 8   RLMISALTFIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLGENPPPSC 67
           R   + L  +AM+ + ++VA    +   SC  V+  LSPC+S+ +G+     G  PP +C
Sbjct: 3   RAAATQLVLVAMVAAMLLVATDAAI---SCGQVSSALSPCISYARGN-----GAKPPVAC 62

Query: 68  CSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTD 127
           CSGV +LA  A++  DK   C+CIK   S  G  +  +   IP  CG+ V    I  S D
Sbjct: 63  CSGVKRLAGAAQSTADKQAACKCIK---SAAGGLNAGKAAGIPSMCGVSVPY-AISASVD 114

Query: 128 CSEV 132
           CS++
Sbjct: 123 CSKI 114

[Close]

BLAST of CmaCh00G002890 vs. TrEMBL
Match: A0A0A0L5X1_CUCSA (Non-specific lipid-transfer protein OS=Cucumis sativus GN=Csa_3G119620 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 9.5e-36
Identity = 80/130 (61.54%), Postives = 97/130 (74.62%), Query Frame = 1


Query: 1   MSGIYNLRLMISALTFIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLG 60
           MSGI+N+R    +L F+A+ T S+MV LSQN D+ SC+ VAQ L+PCL FIKG+      
Sbjct: 1   MSGIFNIR----SLAFVAVFTCSLMVVLSQNEDLESCVPVAQALAPCLGFIKGNG----- 60

Query: 61  ENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIP 120
             P  SCCSGV +LA D KTK DKV LCEC+KKSLS+IG YDP+RIP IP+ CG+ VQIP
Sbjct: 61  -KPSASCCSGVKQLARDTKTKKDKVALCECVKKSLSVIGTYDPSRIPLIPKQCGVSVQIP 120

Query: 121 PIDNSTDCSE 131
           PI NSTDCS+
Sbjct: 121 PIKNSTDCSK 120

[Close]

BLAST of CmaCh00G002890 vs. TrEMBL
Match: A0A151TY04_CAJCA (Non-specific lipid-transfer protein OS=Cajanus cajan GN=KK1_011210 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.3e-20
Identity = 49/123 (39.84%), Postives = 81/123 (65.85%), Query Frame = 1


Query: 10  MISALTFIAMLTSSMMVALSQNVDMGS--CILVAQELSPCLSFIKGSDGGFLGENPPPSC 69
           M    TF+A L S +++ +++   + S  C  V +E++PC SF++ S      + P  +C
Sbjct: 3   MSRTATFLAGLLSIVILIITRCEALASVPCSTVIEEVAPCTSFLQEST-----KKPSQAC 62

Query: 70  CSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTD 129
           CSGV K++ +  TK D+ D+C+C+K+ L+++G YDPN IP +P+ CG+ V++PPID  TD
Sbjct: 63  CSGVKKVSGEGVTKKDRADICQCLKEGLALVGNYDPNLIPQLPKACGLSVKLPPIDKKTD 120

Query: 130 CSE 131
           CS+
Sbjct: 123 CSK 120

[Close]

BLAST of CmaCh00G002890 vs. TrEMBL
Match: A0A061DSH8_THECC (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein, putative OS=Theobroma cacao GN=TCM_005159 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.8e-18
Identity = 49/124 (39.52%), Postives = 79/124 (63.71%), Query Frame = 1


Query: 10  MISALTFIAMLTSSMMVALSQ---NVDMGSCILVAQELSPCLSFIKGSDGGFLGENPPPS 69
           M  ++ F+AML   M+ AL+    ++   SC  V + ++PCL+F+KG  G     +P  +
Sbjct: 1   MAVSINFLAMLVLLMLSALATAETSLLAPSCADVTKAVAPCLNFLKGKGGA----DPSQA 60

Query: 70  CCSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNST 129
           CC G   LA +A+TKND+  +CEC+K +L  +G+YD +R+P I + C + + IPPI++ T
Sbjct: 61  CCDGARDLAKEARTKNDRQAICECLKTALGKVGSYDASRVPLIAKKCNVDINIPPINDKT 120

Query: 130 DCSE 131
           DCS+
Sbjct: 121 DCSK 120

[Close]

BLAST of CmaCh00G002890 vs. TrEMBL
Match: A0A067H3L3_CITSI (Non-specific lipid-transfer protein (Fragment) OS=Citrus sinensis GN=CISIN_1g039540mg PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.0e-18
Identity = 46/96 (47.92%), Postives = 64/96 (66.67%), Query Frame = 1


Query: 36  SCILVAQELSPCLSFIKGSDGGFLGENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSL 95
           SC  V  +L PCLS+++G       + P  +CCSG  K++  AK++  K D+C CI+KSL
Sbjct: 5   SCDEVILDLVPCLSYLRGET-----KQPSAACCSGAQKISNGAKSQAAKKDVCTCIQKSL 64

Query: 96  SMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTDCSEV 132
           + +G YD N IP IP+ CGIP+ +PPID  TDCS+V
Sbjct: 65  ASVGPYDKNLIPLIPQKCGIPLTLPPIDAKTDCSKV 95

[Close]

BLAST of CmaCh00G002890 vs. TrEMBL
Match: V4VXH9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022824mg PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.0e-18
Identity = 46/96 (47.92%), Postives = 64/96 (66.67%), Query Frame = 1


Query: 36  SCILVAQELSPCLSFIKGSDGGFLGENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSL 95
           SC  V  +L PCLS+++G       + P  +CCSG  K++  AK++  K D+C CI+KSL
Sbjct: 38  SCDEVILDLVPCLSYLRGET-----KQPSAACCSGAQKISNGAKSQAAKKDVCTCIQKSL 97

Query: 96  SMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTDCSEV 132
           + +G YD N IP IP+ CGIP+ +PPID  TDCS+V
Sbjct: 98  ASVGPYDKNLIPLIPQKCGIPLTLPPIDAKTDCSKV 128

[Close]

BLAST of CmaCh00G002890 vs. TAIR10
Match: AT5G59320.1 (AT5G59320.1 lipid transfer protein 3)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-11
Identity = 41/123 (33.33%), Postives = 65/123 (52.85%), Query Frame = 1


Query: 10  MISALTFIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLGENPPPSCCS 69
           M  AL F   L  ++ +  S +  + SC  VA  L+PC +++  S GG +    PPSCC+
Sbjct: 1   MAFALRFFTCLVLTVCIVASVDAAI-SCGTVAGSLAPCATYL--SKGGLV----PPSCCA 60

Query: 70  GVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTDCS 129
           GV  L + AKT  D+   C CI+ +   I   +P+    +P  CG+ +   PI  ST+C+
Sbjct: 61  GVKTLNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPY-PISMSTNCN 115

Query: 130 EVE 133
            ++
Sbjct: 121 NIK 115

[Close]

BLAST of CmaCh00G002890 vs. TAIR10
Match: AT5G59310.1 (AT5G59310.1 lipid transfer protein 4)

HSP 1 Score: 59.3 bits (142), Expect = 2.3e-09
Identity = 38/123 (30.89%), Postives = 63/123 (51.22%), Query Frame = 1


Query: 10  MISALTFIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLGENPPPSCCS 69
           M  AL F      ++ +  S +  + +C  VA  LSPCL ++  S GG +    PP CC+
Sbjct: 1   MAFALRFFTCFVLTVFIVASVDAAI-TCGTVASSLSPCLGYL--SKGGVV----PPPCCA 60

Query: 70  GVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTDCS 129
           GV KL   A+T  D+   C C++ +   +   +P+    +P  CG+ +   PI  ST+C+
Sbjct: 61  GVKKLNGMAQTTPDRQQACRCLQSAAKGV---NPSLASGLPGKCGVSIPY-PISTSTNCA 112

Query: 130 EVE 133
            ++
Sbjct: 121 TIK 112

[Close]

BLAST of CmaCh00G002890 vs. TAIR10
Match: AT2G38540.1 (AT2G38540.1 lipid transfer protein 1)

HSP 1 Score: 55.8 bits (133), Expect = 2.6e-08
Identity = 42/126 (33.33%), Postives = 64/126 (50.79%), Query Frame = 1


Query: 10  MISALTFIAMLTSSMMVA--LSQNVDMGSCILVAQELSPCLSFIKGSDGGFLGENPPPSC 69
           M   +    +L + M+VA  ++ N  + SC  V   L+ C+ ++    GG +    PP+C
Sbjct: 1   MAGVMKLACLLLACMIVAGPITSNAAL-SCGSVNSNLAACIGYVL--QGGVI----PPAC 60

Query: 70  CSGVTKLAADAKTKNDKVDLCECIKKSLSMIGA-YDPNRIPSIPEGCGIPVQIP-PIDNS 129
           CSGV  L + AKT  D+   C CI+ +   +G+  +  R   IP+ CG  V IP  I  S
Sbjct: 61  CSGVKNLNSIAKTTPDRQQACNCIQGAARALGSGLNAGRAAGIPKACG--VNIPYKISTS 117

Query: 130 TDCSEV 132
           T+C  V
Sbjct: 121 TNCKTV 117

[Close]

BLAST of CmaCh00G002890 vs. TAIR10
Match: AT3G08770.2 (AT3G08770.2 lipid transfer protein 6)

HSP 1 Score: 51.6 bits (122), Expect = 4.9e-07
Identity = 37/115 (32.17%), Postives = 59/115 (51.30%), Query Frame = 1


Query: 19  MLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLGENPPPSCCSGVTKLAADA 78
           +L   +++AL       SC  V  +L PCLS++  + GG +    P  CC+G+T L + A
Sbjct: 5   LLAVCLVLALHCGEAAVSCNTVIADLYPCLSYV--TQGGPV----PTLCCNGLTTLKSQA 64

Query: 79  KTKNDKVDLCECIKKSLSMIGAYDPNRIPS---IPEGCGI--PVQIPPIDNSTDC 129
           +T  D+  +C CIK ++  +    P  I +   +P  CG+  P +  P   STDC
Sbjct: 65  QTSVDRQGVCRCIKSAIGGL-TLSPRTIQNALELPSKCGVDLPYKFSP---STDC 109

[Close]

BLAST of CmaCh00G002890 vs. TAIR10
Match: AT3G51590.1 (AT3G51590.1 lipid transfer protein 12)

HSP 1 Score: 50.4 bits (119), Expect = 1.1e-06
Identity = 34/119 (28.57%), Postives = 57/119 (47.90%), Query Frame = 1


Query: 14  LTFIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLGENPPPS-CCSGVT 73
           +T + +LT  M       +  G+   V   L+ CL+++  S        P PS CC GV 
Sbjct: 8   ITCLIVLTIYMASPTESTIQCGT---VTSTLAQCLTYLTNS-------GPLPSQCCVGVK 67

Query: 74  KLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTDCSEV 132
            L   A+T  D+  +CEC+K +   I   + + + ++P  CG+ +   PI  ST+C  +
Sbjct: 68  SLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPY-PISFSTNCDSI 115

[Close]

BLAST of CmaCh00G002890 vs. NCBI nr
Match: gi|778676915|ref|XP_004134304.2| (PREDICTED: non-specific lipid-transfer protein Cw18-like [Cucumis sativus])

HSP 1 Score: 177.9 bits (450), Expect = 1.3e-41
Identity = 89/149 (59.73%), Postives = 109/149 (73.15%), Query Frame = 1


Query: 1   MSGIYNLRLMISALTFIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLG 60
           MSGI+N+R    +L F+A+ T S+MV LSQN D+ SC+ VAQ L+PCL FIKG+      
Sbjct: 1   MSGIFNIR----SLAFVAVFTCSLMVVLSQNEDLESCVPVAQALAPCLGFIKGNG----- 60

Query: 61  ENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIP 120
             P  SCCSGV +LA D KTK DKV LCEC+KKSLS+IG YDP+RIP IP+ CG+ VQIP
Sbjct: 61  -KPSASCCSGVKQLARDTKTKKDKVALCECVKKSLSVIGTYDPSRIPLIPKQCGVSVQIP 120

Query: 121 PIDNSTDCSEVEGFEFGSGMSNEVGNCHH 150
           PI NSTDCS+V G++FGS +  E G  HH
Sbjct: 121 PIKNSTDCSKVTGYQFGSALIYEAGGIHH 139

[Close]

BLAST of CmaCh00G002890 vs. NCBI nr
Match: gi|659074983|ref|XP_008437901.1| (PREDICTED: non-specific lipid-transfer protein 3-like [Cucumis melo])

HSP 1 Score: 177.9 bits (450), Expect = 1.3e-41
Identity = 91/149 (61.07%), Postives = 109/149 (73.15%), Query Frame = 1


Query: 1   MSGIYNLRLMISALTFIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLG 60
           MSG++N R    +L F+A+LT S+MV LSQ  D+ SC+ VAQ LSPCL FIKGS      
Sbjct: 1   MSGVFNFR----SLAFVAVLTCSLMVVLSQTEDVESCVPVAQSLSPCLGFIKGSG----- 60

Query: 61  ENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIP 120
             P  SCCSGV +LA + KTK DKV LCECIKKSL+MIG YDP RIP IP+ CGI VQIP
Sbjct: 61  -KPSASCCSGVKQLAGNTKTKKDKVALCECIKKSLAMIGPYDPTRIPLIPKQCGISVQIP 120

Query: 121 PIDNSTDCSEVEGFEFGSGMSNEVGNCHH 150
           PI+NST+CS+V+GF+FGS +  E G  HH
Sbjct: 121 PINNSTNCSKVKGFQFGSALIYEAGGIHH 139

[Close]

BLAST of CmaCh00G002890 vs. NCBI nr
Match: gi|700201296|gb|KGN56429.1| (hypothetical protein Csa_3G119620 [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 1.4e-35
Identity = 80/130 (61.54%), Postives = 97/130 (74.62%), Query Frame = 1


Query: 1   MSGIYNLRLMISALTFIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLG 60
           MSGI+N+R    +L F+A+ T S+MV LSQN D+ SC+ VAQ L+PCL FIKG+      
Sbjct: 1   MSGIFNIR----SLAFVAVFTCSLMVVLSQNEDLESCVPVAQALAPCLGFIKGNG----- 60

Query: 61  ENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIP 120
             P  SCCSGV +LA D KTK DKV LCEC+KKSLS+IG YDP+RIP IP+ CG+ VQIP
Sbjct: 61  -KPSASCCSGVKQLARDTKTKKDKVALCECVKKSLSVIGTYDPSRIPLIPKQCGVSVQIP 120

Query: 121 PIDNSTDCSE 131
           PI NSTDCS+
Sbjct: 121 PIKNSTDCSK 120

[Close]

BLAST of CmaCh00G002890 vs. NCBI nr
Match: gi|1012360746|gb|KYP71930.1| (putative non-specific lipid-transfer protein 1 [Cajanus cajan])

HSP 1 Score: 105.9 bits (263), Expect = 6.2e-20
Identity = 49/123 (39.84%), Postives = 81/123 (65.85%), Query Frame = 1


Query: 10  MISALTFIAMLTSSMMVALSQNVDMGS--CILVAQELSPCLSFIKGSDGGFLGENPPPSC 69
           M    TF+A L S +++ +++   + S  C  V +E++PC SF++ S      + P  +C
Sbjct: 3   MSRTATFLAGLLSIVILIITRCEALASVPCSTVIEEVAPCTSFLQEST-----KKPSQAC 62

Query: 70  CSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTD 129
           CSGV K++ +  TK D+ D+C+C+K+ L+++G YDPN IP +P+ CG+ V++PPID  TD
Sbjct: 63  CSGVKKVSGEGVTKKDRADICQCLKEGLALVGNYDPNLIPQLPKACGLSVKLPPIDKKTD 120

Query: 130 CSE 131
           CS+
Sbjct: 123 CSK 120

[Close]

BLAST of CmaCh00G002890 vs. NCBI nr
Match: gi|590721283|ref|XP_007051567.1| (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 100.5 bits (249), Expect = 2.6e-18
Identity = 49/124 (39.52%), Postives = 79/124 (63.71%), Query Frame = 1


Query: 10  MISALTFIAMLTSSMMVALSQ---NVDMGSCILVAQELSPCLSFIKGSDGGFLGENPPPS 69
           M  ++ F+AML   M+ AL+    ++   SC  V + ++PCL+F+KG  G     +P  +
Sbjct: 1   MAVSINFLAMLVLLMLSALATAETSLLAPSCADVTKAVAPCLNFLKGKGGA----DPSQA 60

Query: 70  CCSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNST 129
           CC G   LA +A+TKND+  +CEC+K +L  +G+YD +R+P I + C + + IPPI++ T
Sbjct: 61  CCDGARDLAKEARTKNDRQAICECLKTALGKVGSYDASRVPLIAKKCNVDINIPPINDKT 120

Query: 130 DCSE 131
           DCS+
Sbjct: 121 DCSK 120

The following BLAST results are available for this feature:

BLAST of CmaCh00G002890 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NLTP3_HORVU	3.3e-13	34.68	Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1	[more]
NLT22_PARJU	4.3e-13	34.11	Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica PE=1 SV=1	[more]
NLTP6_AMBAR	1.2e-12	37.50	Non-specific lipid-transfer protein OS=Ambrosia artemisiifolia PE=1 SV=1	[more]
NLT41_HORVU	1.4e-11	35.48	Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1	[more]
NLT43_HORVU	1.8e-11	35.48	Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1	[more]

BLAST of CmaCh00G002890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5X1_CUCSA	9.5e-36	61.54	Non-specific lipid-transfer protein OS=Cucumis sativus GN=Csa_3G119620 PE=3 SV=1	[more]
A0A151TY04_CAJCA	4.3e-20	39.84	Non-specific lipid-transfer protein OS=Cajanus cajan GN=KK1_011210 PE=3 SV=1	[more]
A0A061DSH8_THECC	1.8e-18	39.52	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
A0A067H3L3_CITSI	4.0e-18	47.92	Non-specific lipid-transfer protein (Fragment) OS=Citrus sinensis GN=CISIN_1g039...	[more]
V4VXH9_9ROSI	4.0e-18	47.92	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022824mg PE=3 SV=1	[more]

BLAST of CmaCh00G002890 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G59320.1	1.1e-11	33.33	lipid transfer protein 3	[more]
AT5G59310.1	2.3e-09	30.89	lipid transfer protein 4	[more]
AT2G38540.1	2.6e-08	33.33	lipid transfer protein 1	[more]
AT3G08770.2	4.9e-07	32.17	lipid transfer protein 6	[more]
AT3G51590.1	1.1e-06	28.57	lipid transfer protein 12	[more]

BLAST of CmaCh00G002890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778676915\|ref\|XP_004134304.2\|	1.3e-41	59.73	PREDICTED: non-specific lipid-transfer protein Cw18-like [Cucumis sativus]	[more]
gi\|659074983\|ref\|XP_008437901.1\|	1.3e-41	61.07	PREDICTED: non-specific lipid-transfer protein 3-like [Cucumis melo]	[more]
gi\|700201296\|gb\|KGN56429.1\|	1.4e-35	61.54	hypothetical protein Csa_3G119620 [Cucumis sativus]	[more]
gi\|1012360746\|gb\|KYP71930.1\|	6.2e-20	39.84	putative non-specific lipid-transfer protein 1 [Cajanus cajan]	[more]
gi\|590721283\|ref\|XP_007051567.1\|	2.6e-18	39.52	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000528	Plant_LTP
IPR016140	Bifunc_inhib/LTP/seed_store

Vocabulary: **Biological Process**
Term	Definition
GO:0006869	lipid transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0008289	lipid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
biological_process	GO:0045454	cell redox homeostasis
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
molecular_function	GO:0008289	lipid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G002890.1	CmaCh00G002890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000528	Plant lipid transfer protein/Par allergen	PRINTS	PR00382	LIPIDTRNSFER	coord: 119..130 score: 2.6E-9coord: 100..117 score: 2.6E-9coord: 83..98 score: 2.6E-9coord: 36..52 score: 2.
IPR000528	Plant lipid transfer protein/Par allergen	PROSITE	PS00597	PLANT_LTP	coord: 109..131 scor
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF00234	Tryp_alpha_amyl	coord: 34..119 score: 1.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 37..128 score: 3.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	unknown	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 36..130 score: 2.46
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 36..131 score: 2.7
None	No IPR available	PANTHER	PTHR33076	FAMILY NOT NAMED	coord: 1..136 score: 5.8
None	No IPR available	PANTHER	PTHR33076:SF9	SUBFAMILY NOT NAMED	coord: 1..136 score: 5.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh00G002890	Cla021161	Watermelon (97103) v1	cmawmB004
CmaCh00G002890	Csa3G119620	Cucumber (Chinese Long) v2	cmacuB005
CmaCh00G002890	ClCG05G000860	Watermelon (Charleston Gray)	cmawcgB002
CmaCh00G002890	CSPI03G07980	Wild cucumber (PI 183967)	cmacpiB005
CmaCh00G002890	CmoCh14G021690	Cucurbita moschata (Rifu)	cmacmoB005
CmaCh00G002890	CmoCh06G010430	Cucurbita moschata (Rifu)	cmacmoB022
CmaCh00G002890	Lsi05G021190	Bottle gourd (USVL1VR-Ls)	cmalsiB000
CmaCh00G002890	Cp4.1LG03g16090	Cucurbita pepo (Zucchini)	cmacpeB002
CmaCh00G002890	CsaV3_3G008100	Cucumber (Chinese Long) v3	cmacucB0006
CmaCh00G002890	Cla97C05G081020	Watermelon (97103) v2	cmawmbB008
CmaCh00G002890	Bhi01G000346	Wax gourd	cmawgoB0000
CmaCh00G002890	CsGy3G008120	Cucumber (Gy14) v2	cgybcmaB281
CmaCh00G002890	Carg25695	Silver-seed gourd	carcmaB0161
CmaCh00G002890	Carg20891	Silver-seed gourd	carcmaB1370

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh00G002890	CmaCh14G021060	Cucurbita maxima (Rimu)	cmacmaB008
CmaCh00G002890	CmaCh06G010580	Cucurbita maxima (Rimu)	cmacmaB019

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh00G002890	Melon (DHL92) v3.6.1	cmamedB006
CmaCh00G002890	Cucurbita maxima (Rimu)	cmacmaB029
CmaCh00G002890	Cucumber (Gy14) v1	cgycmaB0700
CmaCh00G002890	Melon (DHL92) v3.5.1	cmameB004
CmaCh00G002890	Cucurbita pepo (Zucchini)	cmacpeB009