Carg20891 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20891
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Non-specific lipid-transfer protein
Location	Cucurbita_argyrosperma_scaffold_141 : 197107 .. 198174 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGTGTCAATAACCAAAAGAAACTCATAAAATCGGCATGGTAGCAGAATTTCAGGAATCGTTACACAAGAAACTGATATAAAAACACACAAAATCGTAAACCCACCAAGTGTTTGTAAAAATTCCCAAGTGAAATATGTCAGGAATCTACAATCTCCGCTTGATGATCAGTGCACTAACCTTCATCGCCATGCTTACAAGCTCCATGATGGTCGCGCTGTCTCAGAATGTCGACATGGGAAGCTGCATACTGGTGGCGCAGGAGCTATCTCCATGTTTGAGCTTCATCAAAGGCAGCAACGGAGGGTCTCTTGGAGAGAATCCACCGCCGTCGTGCTGCAGTGGCGTTACTAAGTTGGCCGCCGATGCTAAAACGAAGAACGATAAGGTTGATTTGTGCGAGTGTATCAAGAAGAGTTTGTCGATGATCGGAGCTTATGACCCGAATCGCATTCCTTCGATTCCCGAAGGCTGCGGAATCCCAGTTCAAATTCCTCCCATCGATAATTCCACCAACTGCTCAGAGTAATCAAATTAACATTCCCTTTTCCTTTACCTTCGCGCCATGAATCTAAAAAACATTTTCAAGGGACAAATCTAAACAAAAAAATGCGTTGGCTATGATATTGGATGCTAATATTTTGGTGTTGGTGTGTATTGGGATGCAGGGTTGAAGGCTTTGAATTTGGAAGTGGCATACCAAATGAGGTTGGGAATTGCCATCATCATTGATCCCAATCAACATAAACCAAGCCAAAATCCCATATGATGTTCTTCTTAAGTTCCTCTTCGTTTCAAAATAAGATTGAGTCTTGGTCTCAATAATCCTTATTTACTTCCTAATAATACTCTAATAACGATTACCAATAATCATAATTTCATCCGGTTCATCAATTTCTTCCCATTTCTCTTATTTTAATCGTGAATTTGGAGACAATGAATATCTTAAAAAATACGGGAAAGTCTCCAACTTTTTAGTATCTAATAAGTCTCTAAACTTTCAATTTTGTAATTAATAGACCTTGGACTTTAGAATATTTAATAGATTCTTGAACTTTTCGTGATTTT

mRNA sequence

TGTGTGTCAATAACCAAAAGAAACTCATAAAATCGGCATGGTAGCAGAATTTCAGGAATCGTTACACAAGAAACTGATATAAAAACACACAAAATCGTAAACCCACCAAGTGTTTGTAAAAATTCCCAAGTGAAATATGTCAGGAATCTACAATCTCCGCTTGATGATCAGTGCACTAACCTTCATCGCCATGCTTACAAGCTCCATGATGGTCGCGCTGTCTCAGAATGTCGACATGGGAAGCTGCATACTGGTGGCGCAGGAGCTATCTCCATGTTTGAGCTTCATCAAAGGCAGCAACGGAGGGTCTCTTGGAGAGAATCCACCGCCGTCGTGCTGCAGTGGCGTTACTAAGTTGGCCGCCGATGCTAAAACGAAGAACGATAAGGTTGATTTGTGCGAGTGTATCAAGAAGAGTTTGTCGATGATCGGAGCTTATGACCCGAATCGCATTCCTTCGATTCCCGAAGGCTGCGGAATCCCAGTTCAAATTCCTCCCATCGATAATTCCACCAACTGCTCAGAGGTTGAAGGCTTTGAATTTGGAAGTGGCATACCAAATGAGGTTGGGAATTGCCATCATCATTGATCCCAATCAACATAAACCAAGCCAAAATCCCATATGATGTTCTTCTTAAGTTCCTCTTCGTTTCAAAATAAGATTGAGTCTTGGTCTCAATAATCCTTATTTACTTCCTAATAATACTCTAATAACGATTACCAATAATCATAATTTCATCCGGTTCATCAATTTCTTCCCATTTCTCTTATTTTAATCGTGAATTTGGAGACAATGAATATCTTAAAAAATACGGGAAAGTCTCCAACTTTTTAGTATCTAATAAGTCTCTAAACTTTCAATTTTGTAATTAATAGACCTTGGACTTTAGAATATTTAATAGATTCTTGAACTTTTCGTGATTTT

Coding sequence (CDS)

ATGTCAGGAATCTACAATCTCCGCTTGATGATCAGTGCACTAACCTTCATCGCCATGCTTACAAGCTCCATGATGGTCGCGCTGTCTCAGAATGTCGACATGGGAAGCTGCATACTGGTGGCGCAGGAGCTATCTCCATGTTTGAGCTTCATCAAAGGCAGCAACGGAGGGTCTCTTGGAGAGAATCCACCGCCGTCGTGCTGCAGTGGCGTTACTAAGTTGGCCGCCGATGCTAAAACGAAGAACGATAAGGTTGATTTGTGCGAGTGTATCAAGAAGAGTTTGTCGATGATCGGAGCTTATGACCCGAATCGCATTCCTTCGATTCCCGAAGGCTGCGGAATCCCAGTTCAAATTCCTCCCATCGATAATTCCACCAACTGCTCAGAGGTTGAAGGCTTTGAATTTGGAAGTGGCATACCAAATGAGGTTGGGAATTGCCATCATCATTGA

Protein sequence

MSGIYNLRLMISALTFIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSNGGSLGENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTNCSEVEGFEFGSGIPNEVGNCHHH

Homology

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BLAST of Carg20891 vs. NCBI nr
Match: XP_022938404.1 (non-specific lipid-transfer protein 3-like [Cucurbita moschata])

HSP 1 Score: 299.7 bits (766), Expect = 5.7e-78
Identity = 147/150 (98.00%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 1   MSGIYNLRLMISALTFIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSNGGSLG 60
           MSGIYNLRLMISALTFIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGS+GG LG
Sbjct: 1   MSGIYNLRLMISALTFIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLG 60

Query: 61  ENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIP 120
           ENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIP
Sbjct: 61  ENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIP 120

Query: 121 PIDNSTNCSEVEGFEFGSGIPNEVGNCHHH 151
           PIDNSTNCSEVEGFEFGSG+PNEVGNCHHH
Sbjct: 121 PIDNSTNCSEVEGFEFGSGLPNEVGNCHHH 150

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BLAST of Carg20891 vs. NCBI nr
Match: XP_023539575.1 (non-specific lipid-transfer protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 293.1 bits (749), Expect = 5.3e-76
Identity = 144/150 (96.00%), Postives = 148/150 (98.67%), Query Frame = 0


Query: 1   MSGIYNLRLMISALTFIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSNGGSLG 60
           MSGIYNLRLMISALTFIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSNGG LG
Sbjct: 1   MSGIYNLRLMISALTFIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSNGGFLG 60

Query: 61  ENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIP 120
           ENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSLS+IGAYDPNRIPSI +GCGIPVQIP
Sbjct: 61  ENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSLSIIGAYDPNRIPSIAKGCGIPVQIP 120

Query: 121 PIDNSTNCSEVEGFEFGSGIPNEVGNCHHH 151
           PIDNST+CSEVEGFEFGSG+PNEVGNCHHH
Sbjct: 121 PIDNSTDCSEVEGFEFGSGMPNEVGNCHHH 150

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BLAST of Carg20891 vs. NCBI nr
Match: XP_022974952.1 (non-specific lipid-transfer protein 3-like [Cucurbita maxima])

HSP 1 Score: 291.6 bits (745), Expect = 1.5e-75
Identity = 144/149 (96.64%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 1   MSGIYNLRLMISALTFIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSNGGSLG 60
           MSGIYNLRLMISALTFIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGS+GG LG
Sbjct: 1   MSGIYNLRLMISALTFIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLG 60

Query: 61  ENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIP 120
           ENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIP
Sbjct: 61  ENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIP 120

Query: 121 PIDNSTNCSEVEGFEFGSGIPNEVGNCHH 150
           PIDNST+CSEVEGFEFGSG+ NEVGNCHH
Sbjct: 121 PIDNSTDCSEVEGFEFGSGMSNEVGNCHH 149

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BLAST of Carg20891 vs. NCBI nr
Match: XP_022974667.1 (non-specific lipid-transfer protein 3-like [Cucurbita maxima])

HSP 1 Score: 288.9 bits (738), Expect = 1.0e-74
Identity = 143/149 (95.97%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 1   MSGIYNLRLMISALTFIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSNGGSLG 60
           MSGIYNLRLMISALT IAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGS+GG LG
Sbjct: 1   MSGIYNLRLMISALTVIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLG 60

Query: 61  ENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIP 120
           ENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIP
Sbjct: 61  ENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIP 120

Query: 121 PIDNSTNCSEVEGFEFGSGIPNEVGNCHH 150
           PIDNST+CSEVEGFEFGSG+ NEVGNCHH
Sbjct: 121 PIDNSTDCSEVEGFEFGSGMSNEVGNCHH 149

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BLAST of Carg20891 vs. NCBI nr
Match: XP_022980045.1 (non-specific lipid-transfer protein-like [Cucurbita maxima])

HSP 1 Score: 196.8 bits (499), Expect = 5.2e-47
Identity = 96/150 (64.00%), Postives = 116/150 (77.33%), Query Frame = 0


Query: 1   MSGIYNLRLMISALTFIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSNGGSLG 60
           MSGI++LR  I AL F+A+     MV LSQ+ D+ +CI V QELSPCL FIKGS+ G  G
Sbjct: 1   MSGIFHLRSTIGALAFVAIFICPQMVTLSQSADVEACIPVVQELSPCLGFIKGSDSGFGG 60

Query: 61  ENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIP 120
           ENP PSCC+GV KL  DAKTK D+VDLCECIK SLSMIG YDP+RIP IPE CGIP QIP
Sbjct: 61  ENPSPSCCTGVGKLVDDAKTKKDRVDLCECIKTSLSMIGPYDPSRIPLIPEDCGIPAQIP 120

Query: 121 PIDNSTNCSEVEGFEFGSGIPNEVGNCHHH 151
           PID+ST+CS+ EG++FGS   +E+ + H+H
Sbjct: 121 PIDSSTDCSKAEGYQFGSAFSSELEDNHNH 150

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BLAST of Carg20891 vs. TAIR10
Match: AT2G18370.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 60.8 bits (146), Expect = 8.0e-10
Identity = 33/93 (35.48%), Postives = 47/93 (50.54%), Query Frame = 0


Query: 36  SCILVAQELSPCLSFIKGSNGGSLGENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSL 95
           SC +V Q+L PC+S++   +G     NPP +CC GV  LAA   T  DK   C+CIK   
Sbjct: 27  SCSVVLQDLQPCVSYLTSGSG-----NPPETCCDGVKSLAAATTTSADKKAACQCIKSVA 86

Query: 96  SMIGAYDPNRIPSIPEGCG--IPVQIPPIDNST 127
           + +    P    ++   CG  +PV   P  + T
Sbjct: 87  NSV-TVKPELAQALASNCGASLPVDASPTVDCT 113

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BLAST of Carg20891 vs. TAIR10
Match: AT5G01870.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 52.8 bits (125), Expect = 2.2e-07
Identity = 30/99 (30.30%), Postives = 52/99 (52.53%), Query Frame = 0


Query: 36  SCILVAQELSPCLSFIKGSNGGSLGENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSL 95
           SC  V   L PC+ ++    GG++    P SCC+G+  L+  A + +DK  +C CIK  +
Sbjct: 25  SCNAVQANLYPCVVYV--VQGGAI----PYSCCNGIRMLSKQATSASDKQGVCRCIKSVV 84

Query: 96  SMI--GAYDPNRIPSIPEGCGIPVQIPPIDNSTNCSEVE 133
             +   +    +  ++P  CG+ +    ID STNC+ ++
Sbjct: 85  GRVSYSSIYLKKAAALPGKCGVKLPY-KIDPSTNCNSIK 116

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BLAST of Carg20891 vs. TAIR10
Match: AT3G08770.2 (lipid transfer protein 6)

HSP 1 Score: 50.1 bits (118), Expect = 1.4e-06
Identity = 36/115 (31.30%), Postives = 59/115 (51.30%), Query Frame = 0


Query: 19  MLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSNGGSLGENPPPSCCSGVTKLAADA 78
           +L   +++AL       SC  V  +L PCLS++  + GG +    P  CC+G+T L + A
Sbjct: 5   LLAVCLVLALHCGEAAVSCNTVIADLYPCLSYV--TQGGPV----PTLCCNGLTTLKSQA 64

Query: 79  KTKNDKVDLCECIKKSLSMIGAYDPNRIPS---IPEGCGI--PVQIPPIDNSTNC 129
           +T  D+  +C CIK ++  +    P  I +   +P  CG+  P +  P   ST+C
Sbjct: 65  QTSVDRQGVCRCIKSAIGGL-TLSPRTIQNALELPSKCGVDLPYKFSP---STDC 109

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BLAST of Carg20891 vs. TAIR10
Match: AT2G15325.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 47.0 bits (110), Expect = 1.2e-05
Identity = 24/89 (26.97%), Postives = 45/89 (50.56%), Query Frame = 0


Query: 44  LSPCLSFIKGSNGGSLGENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDP 103
           L+PCL ++           P P CCSG+ K+    KT +D+ D+C C+    ++  A D 
Sbjct: 38  LTPCLRYLWAPPEA----KPSPECCSGLDKVNKGVKTYDDRHDMCICLSSEAAITSA-DQ 97

Query: 104 NRIPSIPEGCGIPVQIPPIDNSTNCSEVE 133
            +  ++P+ C + +   P+    +CS ++
Sbjct: 98  YKFDNLPKLCNVAL-FAPVGPKFDCSTIK 120

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BLAST of Carg20891 vs. Swiss-Prot
Match: sp|O04004|NLTP6_AMBAR (Non-specific lipid-transfer protein OS=Ambrosia artemisiifolia OX=4212 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.3e-12
Identity = 35/96 (36.46%), Postives = 52/96 (54.17%), Query Frame = 0


Query: 36  SCILVAQELSPCLSFIKGSNGGSLGENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSL 95
           +C  V   L+PC  F+        G+ P  +CC+GV  L    KTK D+V +C CIK+  
Sbjct: 29  TCDTVQNILAPCAGFL-------TGQEPSKACCTGVNNLNNSRKTKADRVAVCNCIKELT 88

Query: 96  SMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTNCSEV 132
             I AYDP R+P +   CG+    P +D + +CS++
Sbjct: 89  KSI-AYDPKRMPLLSTKCGVKPDFPAVDKNLDCSKL 116

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BLAST of Carg20891 vs. Swiss-Prot
Match: sp|Q43871|NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare OX=4513 GN=CW18 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.0e-10
Identity = 42/124 (33.87%), Postives = 65/124 (52.42%), Query Frame = 0


Query: 8   RLMISALTFIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSNGGSLGENPPPSC 67
           R   + L  +A++ + ++VA    +   +C  V+  L PC ++ KGS     G +P   C
Sbjct: 3   RTAATKLALVALVAAMLLVAADAAI---TCGQVSSALGPCAAYAKGS-----GTSPSAGC 62

Query: 68  CSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTN 127
           CSGV +LA  A++  DK   C C+K   S+ GAY+  R   IP  CG+ V    I  S +
Sbjct: 63  CSGVKRLAGLARSTADKQATCRCLK---SVAGAYNAGRAAGIPSRCGVSVPY-TISASVD 114

Query: 128 CSEV 132
           CS++
Sbjct: 123 CSKI 114

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BLAST of Carg20891 vs. Swiss-Prot
Match: sp|Q9ZPW9|NLTP8_ARATH (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana OX=3702 GN=LTP8 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-08
Identity = 33/93 (35.48%), Postives = 47/93 (50.54%), Query Frame = 0


Query: 36  SCILVAQELSPCLSFIKGSNGGSLGENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSL 95
           SC +V Q+L PC+S++   +G     NPP +CC GV  LAA   T  DK   C+CIK   
Sbjct: 27  SCSVVLQDLQPCVSYLTSGSG-----NPPETCCDGVKSLAAATTTSADKKAACQCIKSVA 86

Query: 96  SMIGAYDPNRIPSIPEGCG--IPVQIPPIDNST 127
           + +    P    ++   CG  +PV   P  + T
Sbjct: 87  NSV-TVKPELAQALASNCGASLPVDASPTVDCT 113

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BLAST of Carg20891 vs. Swiss-Prot
Match: sp|Q43748|NLTP_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris OX=161934 GN=IWF1' PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-08
Identity = 35/116 (30.17%), Postives = 60/116 (51.72%), Query Frame = 0


Query: 16  FIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSNGGSLGENPPPSCCSGVTKLA 75
           F   L   MMVA +   +  +C LVA +L+PC+ +++G+ G      P  +CC G+  L 
Sbjct: 9   FTCALVMCMMVA-APLAEAITCGLVASKLAPCIGYLQGAPG------PSAACCGGIKSLN 68

Query: 76  ADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTNCSEV 132
           + A +  D+   C C+K + + I   +  +  S+P  CG+ V    I  +TNC+ +
Sbjct: 69  SAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPY-AISPNTNCNAI 116

[Close]

BLAST of Carg20891 vs. Swiss-Prot
Match: sp|O24038|NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii OX=28526 GN=LTP2 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.6e-07
Identity = 39/118 (33.05%), Postives = 57/118 (48.31%), Query Frame = 0


Query: 17  IAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSNGGSLGENPPPSCCSGVTKLAA 76
           IA      MV ++ + +  +C  V   L+PCL ++   N G LG      CC GV  L  
Sbjct: 7   IACFVLLCMVVVAPHAEALTCGQVTSTLAPCLPYL--MNRGPLG-----GCCGGVKGLLG 66

Query: 77  DAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGC--GIPVQIPPIDNSTNCSEVE 133
            A+T  D+   C C+K + S     D  +  S+P  C   IP +I P   ST+CS+V+
Sbjct: 67  QAQTTVDRQTACTCLKSAASSFTGLDLGKAASLPSTCSVNIPYKISP---STDCSKVQ 114

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BLAST of Carg20891 vs. TrEMBL
Match: tr|A0A0A0L5X1|A0A0A0L5X1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119620 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 8.7e-35
Identity = 81/130 (62.31%), Postives = 98/130 (75.38%), Query Frame = 0


Query: 1   MSGIYNLRLMISALTFIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSNGGSLG 60
           MSGI+N+R    +L F+A+ T S+MV LSQN D+ SC+ VAQ L+PCL FIKG NG    
Sbjct: 1   MSGIFNIR----SLAFVAVFTCSLMVVLSQNEDLESCVPVAQALAPCLGFIKG-NG---- 60

Query: 61  ENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIP 120
             P  SCCSGV +LA D KTK DKV LCEC+KKSLS+IG YDP+RIP IP+ CG+ VQIP
Sbjct: 61  -KPSASCCSGVKQLARDTKTKKDKVALCECVKKSLSVIGTYDPSRIPLIPKQCGVSVQIP 120

Query: 121 PIDNSTNCSE 131
           PI NST+CS+
Sbjct: 121 PIKNSTDCSK 120

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BLAST of Carg20891 vs. TrEMBL
Match: tr|A0A1J7HL36|A0A1J7HL36_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_25682 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.3e-19
Identity = 52/120 (43.33%), Postives = 79/120 (65.83%), Query Frame = 0


Query: 11  ISALTFIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSNGGSLGENPPPSCCSG 70
           I+ L+FI +L+SS        V + SC  V QE++PC  FI  SN      +P  +CC+G
Sbjct: 7   ITILSFIILLSSS-----EAKVSI-SCPKVIQEIAPCSDFILKSN------DPSQACCNG 66

Query: 71  VTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTNCSE 130
           V  L+ +AK++ D+ D+C+C+K+ LS IG YDP RIP +P+ CG+ + +PPID +T+CS+
Sbjct: 67  VKTLSDEAKSQKDRTDICQCLKQGLSGIGKYDPKRIPQLPKACGVSITLPPIDQNTDCSK 114

[Close]

BLAST of Carg20891 vs. TrEMBL
Match: tr|A0A151TY04|A0A151TY04_CAJCA (Non-specific lipid-transfer protein OS=Cajanus cajan OX=3821 GN=KK1_011210 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.9e-19
Identity = 48/123 (39.02%), Postives = 81/123 (65.85%), Query Frame = 0


Query: 10  MISALTFIAMLTSSMMVALSQNVDMGS--CILVAQELSPCLSFIKGSNGGSLGENPPPSC 69
           M    TF+A L S +++ +++   + S  C  V +E++PC SF++ S      + P  +C
Sbjct: 3   MSRTATFLAGLLSIVILIITRCEALASVPCSTVIEEVAPCTSFLQEST-----KKPSQAC 62

Query: 70  CSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTN 129
           CSGV K++ +  TK D+ D+C+C+K+ L+++G YDPN IP +P+ CG+ V++PPID  T+
Sbjct: 63  CSGVKKVSGEGVTKKDRADICQCLKEGLALVGNYDPNLIPQLPKACGLSVKLPPIDKKTD 120

Query: 130 CSE 131
           CS+
Sbjct: 123 CSK 120

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BLAST of Carg20891 vs. TrEMBL
Match: tr|A0A1R3KNI3|A0A1R3KNI3_9ROSI (Plant lipid transfer protein/Par allergen OS=Corchorus olitorius OX=93759 GN=COLO4_06294 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.1e-18
Identity = 50/120 (41.67%), Postives = 74/120 (61.67%), Query Frame = 0


Query: 10  MISALTFIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSNGGSLGENPPPSCCS 69
           M   + F+ +L  S  +A+++     SC+ V   ++PCL+F+KG+      E P P+CCS
Sbjct: 1   MTHFINFLVLLALSTTLAIAEIPLAPSCVEVTMAVAPCLTFLKGA------ETPSPACCS 60

Query: 70  GVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTNCS 129
           G  KLA  A  K D+  +C C+K SLS IG+YDP R+P I + CG+ + IPPI + T+CS
Sbjct: 61  GAQKLAKQASAKADREAVCGCLKNSLSKIGSYDPQRVPLIAKKCGVNMNIPPITSKTDCS 114

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BLAST of Carg20891 vs. TrEMBL
Match: tr|A0A1R3H224|A0A1R3H224_COCAP (Plant lipid transfer protein/Par allergen OS=Corchorus capsularis OX=210143 GN=CCACVL1_21874 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.6e-18
Identity = 51/120 (42.50%), Postives = 73/120 (60.83%), Query Frame = 0


Query: 10  MISALTFIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSNGGSLGENPPPSCCS 69
           M   + F+ +L  S  +A+++     SC  V   ++PCL+F+KG+      E P P CCS
Sbjct: 1   MTRFINFLVLLALSTTLAIAEIPLAPSCGEVTMAVAPCLTFLKGA------ETPSPGCCS 60

Query: 70  GVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTNCS 129
           G  KLA  A TK D+  +C C+K SLS IG+YDP R+P I + CG+ + IPPI + T+CS
Sbjct: 61  GAQKLAKQASTKADREAVCGCLKNSLSKIGSYDPQRVPLIAKKCGVNMNIPPITSKTDCS 114

The following BLAST results are available for this feature:

BLAST of Carg20891 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022938404.1	5.7e-78	98.00	non-specific lipid-transfer protein 3-like [Cucurbita moschata]	[more]
XP_023539575.1	5.3e-76	96.00	non-specific lipid-transfer protein 3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022974952.1	1.5e-75	96.64	non-specific lipid-transfer protein 3-like [Cucurbita maxima]	[more]
XP_022974667.1	1.0e-74	95.97	non-specific lipid-transfer protein 3-like [Cucurbita maxima]	[more]
XP_022980045.1	5.2e-47	64.00	non-specific lipid-transfer protein-like [Cucurbita maxima]	[more]

BLAST of Carg20891 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G18370.1	8.0e-10	35.48	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT5G01870.1	2.2e-07	30.30	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT3G08770.2	1.4e-06	31.30	lipid transfer protein 6	[more]
AT2G15325.1	1.2e-05	26.97	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]

BLAST of Carg20891 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O04004\|NLTP6_AMBAR	6.3e-12	36.46	Non-specific lipid-transfer protein OS=Ambrosia artemisiifolia OX=4212 PE=1 SV=1	[more]
sp\|Q43871\|NLTP8_HORVU	2.0e-10	33.87	Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare OX=4513 GN=CW18 PE=1...	[more]
sp\|Q9ZPW9\|NLTP8_ARATH	1.4e-08	35.48	Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana OX=3702 GN=LTP8 PE...	[more]
sp\|Q43748\|NLTP_BETVU	1.4e-08	30.17	Non-specific lipid-transfer protein OS=Beta vulgaris OX=161934 GN=IWF1' PE=3 SV=...	[more]
sp\|O24038\|NLTP2_SOLPN	1.6e-07	33.05	Non-specific lipid-transfer protein 2 OS=Solanum pennellii OX=28526 GN=LTP2 PE=3...	[more]

BLAST of Carg20891 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L5X1\|A0A0A0L5X1_CUCSA	8.7e-35	62.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119620 PE=3 SV=1	[more]
tr\|A0A1J7HL36\|A0A1J7HL36_LUPAN	2.3e-19	43.33	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_25682 PE=3 S...	[more]
tr\|A0A151TY04\|A0A151TY04_CAJCA	3.9e-19	39.02	Non-specific lipid-transfer protein OS=Cajanus cajan OX=3821 GN=KK1_011210 PE=3 ...	[more]
tr\|A0A1R3KNI3\|A0A1R3KNI3_9ROSI	1.1e-18	41.67	Plant lipid transfer protein/Par allergen OS=Corchorus olitorius OX=93759 GN=COL...	[more]
tr\|A0A1R3H224\|A0A1R3H224_COCAP	2.6e-18	42.50	Plant lipid transfer protein/Par allergen OS=Corchorus capsularis OX=210143 GN=C...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006869	lipid transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0008289	lipid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036312	Bifun_inhib/LTP/seed_sf
IPR016140	Bifunc_inhib/LTP/seed_store
IPR000528	Plant_LTP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
biological_process	GO:0045454	cell redox homeostasis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008289	lipid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20891-RA	Carg20891-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000528	Plant lipid transfer protein/Par allergen	PRINTS	PR00382	LIPIDTRNSFER	coord: 100..117 score: 24.79 coord: 83..98 score: 30.38 coord: 119..130 score: 37.05 coord: 36..52 score: 35.11
IPR000528	Plant lipid transfer protein/Par allergen	PROSITE	PS00597	PLANT_LTP	coord: 109..131
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 37..128 e-value: 5.7E-6 score: 35.8
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 17..118 e-value: 1.4E-5 score: 25.1
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 35..132 e-value: 5.7E-23 score: 82.9
None	No IPR available	PANTHER	PTHR33076	FAMILY NOT NAMED	coord: 22..132
None	No IPR available	PANTHER	PTHR33076:SF9	SUBFAMILY NOT NAMED	coord: 22..132
None	No IPR available	CDD	cd01960	nsLTP1	coord: 36..129 e-value: 1.68147E-23 score: 88.1757
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 36..131

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20891	Cla021161	Watermelon (97103) v1	carwmB0992
Carg20891	Csa3G119620	Cucumber (Chinese Long) v2	carcuB1007
Carg20891	ClCG05G000860	Watermelon (Charleston Gray)	carwcgB0968
Carg20891	CSPI03G07980	Wild cucumber (PI 183967)	carcpiB1031
Carg20891	CmaCh06G010580	Cucurbita maxima (Rimu)	carcmaB1375
Carg20891	CmaCh14G021060	Cucurbita maxima (Rimu)	carcmaB1373
Carg20891	CmaCh00G002890	Cucurbita maxima (Rimu)	carcmaB1370
Carg20891	CmoCh06G010430	Cucurbita moschata (Rifu)	carcmoB1332
Carg20891	CmoCh14G021690	Cucurbita moschata (Rifu)	carcmoB1330
Carg20891	Lsi05G021190	Bottle gourd (USVL1VR-Ls)	carlsiB907
Carg20891	Cp4.1LG03g16090	Cucurbita pepo (Zucchini)	carcpeB1379
Carg20891	CsGy3G008120	Cucumber (Gy14) v2	carcgybB0980
Carg20891	CsaV3_3G008100	Cucumber (Chinese Long) v3	carcucB1037
Carg20891	Cla97C05G081020	Watermelon (97103) v2	carwmbB1047
Carg20891	Bhi01G000346	Wax gourd	carwgoB1162

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg20891	Carg25695	Silver-seed gourd	carcarB146

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20891	Cucumber (Gy14) v1	carcgyB1110
Carg20891	Cucurbita maxima (Rimu)	carcmaB1371
Carg20891	Cucurbita pepo (Zucchini)	carcpeB1380
Carg20891	Melon (DHL92) v3.5.1	carmeB0968
Carg20891	Melon (DHL92) v3.6.1	carmedB0978
Carg20891	Watermelon (97103) v2	carwmbB1044
Carg20891	Watermelon (97103) v2	carwmbB1046