CmaCh06G010580 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G010580
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Non-specific lipid-transfer protein
Location	Cma_Chr06 : 7120668 .. 7121429 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAGTGCACTAACCGTCATCGCCATGCTTACAAGCTCCATGATGGTCGCGCTGTCTCAGAATGTCGACATGGGAAGCTGCATACTGGTGGCGCAGGAGCTATCGCCATGTTTGAGCTTCATCAAAGGCAGTGACGGAGGGTTTCTTGGAGAGAATCCACCGCCGTCGTGCTGCAGTGGCGTTACTAAGTTGGCCGCCGATGCTAAAACGAAGAACGATAAGGTTGATTTGTGCGAGTGTATCAAGAAGAGTTTGTCGATGATCGGAGCTTATGATCCGAATCGCATTCCTTCGATTCCCGAAGGCTGCGGAATTCCAGTTCAAATTCCTCCCATTGACAATTCCACTGACTGCTCAGAGTAATCAAATTAACATTTCCTTTTCCCTTTTCCTTCGCGCCATGAATCTAAAATGCATTTTCAAGGGACAAATTAAAAAGAAAAATGCGTTGGCTATGATATTGGATGCTAATATTTTGGTGTTGGTGTGTATTGGGATGCAGGGTTGAAGGCTTTGAATTTGGAAGTGGCATGTCAAATGAGGTTGGGAATTGCCATCATCAATGATCCCAATCAACATAAACCAAGCCAAAATCCCATATGATGTTCTTAAGTTTCTCTTCGTTTCAAAATAAGATTGAGTCTTGGTCTCAATAATCCTTATTTACTTCTTAATAATACTCTAATAACGATTACCAATAATCATAATTTCATAACCGTTCATCAATTTCTTCCCATTTTAGTATATTTTAAAAATTTC

mRNA sequence

ATGATCAGTGCACTAACCGTCATCGCCATGCTTACAAGCTCCATGATGGTCGCGCTGTCTCAGAATGTCGACATGGGAAGCTGCATACTGGTGGCGCAGGAGCTATCGCCATGTTTGAGCTTCATCAAAGGCAGTGACGGAGGGTTTCTTGGAGAGAATCCACCGCCGTCGTGCTGCAGTGGCGTTACTAAGTTGGCCGCCGATGCTAAAACGAAGAACGATAAGGTTGATTTGTGCGAGTGTATCAAGAAGAGTTTGTCGATGATCGGAGCTTATGATCCGAATCGCATTCCTTCGATTCCCGAAGGCTGCGGAATTCCAGTTCAAATTCCTCCCATTGACAATTCCACTGACTGCTCAGAGGTTGAAGGCTTTGAATTTGGAAGTGGCATGTCAAATGAGGTTGGGAATTGCCATCATCAATGATCCCAATCAACATAAACCAAGCCAAAATCCCATATGATGTTCTTAAGTTTCTCTTCGTTTCAAAATAAGATTGAGTCTTGGTCTCAATAATCCTTATTTACTTCTTAATAATACTCTAATAACGATTACCAATAATCATAATTTCATAACCGTTCATCAATTTCTTCCCATTTTAGTATATTTTAAAAATTTC

Coding sequence (CDS)

ATGATCAGTGCACTAACCGTCATCGCCATGCTTACAAGCTCCATGATGGTCGCGCTGTCTCAGAATGTCGACATGGGAAGCTGCATACTGGTGGCGCAGGAGCTATCGCCATGTTTGAGCTTCATCAAAGGCAGTGACGGAGGGTTTCTTGGAGAGAATCCACCGCCGTCGTGCTGCAGTGGCGTTACTAAGTTGGCCGCCGATGCTAAAACGAAGAACGATAAGGTTGATTTGTGCGAGTGTATCAAGAAGAGTTTGTCGATGATCGGAGCTTATGATCCGAATCGCATTCCTTCGATTCCCGAAGGCTGCGGAATTCCAGTTCAAATTCCTCCCATTGACAATTCCACTGACTGCTCAGAGGTTGAAGGCTTTGAATTTGGAAGTGGCATGTCAAATGAGGTTGGGAATTGCCATCATCAATGA

Protein sequence

MISALTVIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLGENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTDCSEVEGFEFGSGMSNEVGNCHHQ

Homology

[Close]

BLAST of CmaCh06G010580 vs. Swiss-Prot
Match: NLT22_PARJU (Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.4e-13
Identity = 45/129 (34.88%), Postives = 64/129 (49.61%), Query Frame = 1


Query: 2   ISALTVIAML---TSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLGENPPPSC 61
           ++AL VIA     TSS  +A +     G C  V   + PCL F+KG +     + P  SC
Sbjct: 6   MAALVVIAAALAWTSSAELASAPAPGEGPCGKVVHHIMPCLKFVKGEE-----KEPSKSC 65

Query: 62  CSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTD 121
           CSG  KL+ + KT   K + C+CI  +   I       +  +P+ CGI   +PPI    D
Sbjct: 66  CSGTKKLSEEVKTTEQKREACKCIVAATKGISGIKNELVAEVPKKCGITTTLPPITADFD 125

Query: 122 CSEVEGFEF 128
           CS++E   F
Sbjct: 126 CSKIESTIF 129

[Close]

BLAST of CmaCh06G010580 vs. Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.1e-13
Identity = 42/118 (35.59%), Postives = 67/118 (56.78%), Query Frame = 1


Query: 5   LTVIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLGENPPPSCCSGVTK 64
           L ++AM+ + ++VA    +   SC  V+  LSPC+S+ +G+     G  PP +CCSGV +
Sbjct: 9   LVLVAMVAAMLLVATDAAI---SCGQVSSALSPCISYARGN-----GAKPPVACCSGVKR 68

Query: 65  LAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTDCSEV 123
           LA  A++  DK   C C+K   + I   +  ++  +P  CG+ V   PI  STDC++V
Sbjct: 69  LAGAAQSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPF-PISMSTDCNKV 117

[Close]

BLAST of CmaCh06G010580 vs. Swiss-Prot
Match: NLTP6_AMBAR (Non-specific lipid-transfer protein OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-12
Identity = 36/96 (37.50%), Postives = 52/96 (54.17%), Query Frame = 1


Query: 27  SCILVAQELSPCLSFIKGSDGGFLGENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSL 86
           +C  V   L+PC  F+ G +       P  +CC+GV  L    KTK D+V +C CIK+  
Sbjct: 29  TCDTVQNILAPCAGFLTGQE-------PSKACCTGVNNLNNSRKTKADRVAVCNCIKELT 88

Query: 87  SMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTDCSEV 123
             I AYDP R+P +   CG+    P +D + DCS++
Sbjct: 89  KSI-AYDPKRMPLLSTKCGVKPDFPAVDKNLDCSKL 116

[Close]

BLAST of CmaCh06G010580 vs. Swiss-Prot
Match: NLT21_PARJU (Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-11
Identity = 42/129 (32.56%), Postives = 64/129 (49.61%), Query Frame = 1


Query: 2   ISALTVIAML---TSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLGENPPPSC 61
           ++AL VIA     TSS   A +      +C  V Q++ PCL F+KG +     + P   C
Sbjct: 6   MAALVVIAAALAWTSSAEPAPAPAPGEEACGKVVQDIMPCLHFVKGEE-----KEPSKEC 65

Query: 62  CSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTD 121
           CSG  KL+ + KT   K + C+CI ++   I       +  +P+ C I   +PPI    D
Sbjct: 66  CSGTKKLSEEVKTTEQKREACKCIVRATKGISGIKNELVAEVPKKCDIKTTLPPITADFD 125

Query: 122 CSEVEGFEF 128
           CS+++   F
Sbjct: 126 CSKIQSTIF 129

[Close]

BLAST of CmaCh06G010580 vs. Swiss-Prot
Match: NLT41_HORVU (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.7e-11
Identity = 43/120 (35.83%), Postives = 66/120 (55.00%), Query Frame = 1


Query: 3   SALTVIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLGENPPPSCCSGV 62
           S L ++A++ + ++VA    +   SC  V+  LSPC+S+ +G+     G  PP +CCSGV
Sbjct: 7   SQLVLVALVAAMLLVAADAAI---SCGQVSSALSPCISYARGN-----GAKPPAACCSGV 66

Query: 63  TKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTDCSEV 122
            +LA  A++  DK   C+CIK   S  G  +  +   IP  CG+ V    I  S DCS++
Sbjct: 67  KRLAGAAQSTADKQAACKCIK---SAAGGLNAGKAAGIPSMCGVSVPY-AISASVDCSKI 114

[Close]

BLAST of CmaCh06G010580 vs. TrEMBL
Match: A0A0A0L5X1_CUCSA (Non-specific lipid-transfer protein OS=Cucumis sativus GN=Csa_3G119620 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.2e-32
Identity = 74/120 (61.67%), Postives = 89/120 (74.17%), Query Frame = 1


Query: 2   ISALTVIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLGENPPPSCCSG 61
           I +L  +A+ T S+MV LSQN D+ SC+ VAQ L+PCL FIKG+        P  SCCSG
Sbjct: 7   IRSLAFVAVFTCSLMVVLSQNEDLESCVPVAQALAPCLGFIKGNG------KPSASCCSG 66

Query: 62  VTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTDCSE 121
           V +LA D KTK DKV LCEC+KKSLS+IG YDP+RIP IP+ CG+ VQIPPI NSTDCS+
Sbjct: 67  VKQLARDTKTKKDKVALCECVKKSLSVIGTYDPSRIPLIPKQCGVSVQIPPIKNSTDCSK 120

[Close]

BLAST of CmaCh06G010580 vs. TrEMBL
Match: A0A151TY04_CAJCA (Non-specific lipid-transfer protein OS=Cajanus cajan GN=KK1_011210 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.8e-19
Identity = 48/123 (39.02%), Postives = 80/123 (65.04%), Query Frame = 1


Query: 1   MISALTVIAMLTSSMMVALSQNVDMGS--CILVAQELSPCLSFIKGSDGGFLGENPPPSC 60
           M    T +A L S +++ +++   + S  C  V +E++PC SF++ S      + P  +C
Sbjct: 3   MSRTATFLAGLLSIVILIITRCEALASVPCSTVIEEVAPCTSFLQEST-----KKPSQAC 62

Query: 61  CSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTD 120
           CSGV K++ +  TK D+ D+C+C+K+ L+++G YDPN IP +P+ CG+ V++PPID  TD
Sbjct: 63  CSGVKKVSGEGVTKKDRADICQCLKEGLALVGNYDPNLIPQLPKACGLSVKLPPIDKKTD 120

Query: 121 CSE 122
           CS+
Sbjct: 123 CSK 120

[Close]

BLAST of CmaCh06G010580 vs. TrEMBL
Match: A0A067H3L3_CITSI (Non-specific lipid-transfer protein (Fragment) OS=Citrus sinensis GN=CISIN_1g039540mg PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.8e-18
Identity = 46/96 (47.92%), Postives = 64/96 (66.67%), Query Frame = 1


Query: 27  SCILVAQELSPCLSFIKGSDGGFLGENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSL 86
           SC  V  +L PCLS+++G       + P  +CCSG  K++  AK++  K D+C CI+KSL
Sbjct: 5   SCDEVILDLVPCLSYLRGET-----KQPSAACCSGAQKISNGAKSQAAKKDVCTCIQKSL 64

Query: 87  SMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTDCSEV 123
           + +G YD N IP IP+ CGIP+ +PPID  TDCS+V
Sbjct: 65  ASVGPYDKNLIPLIPQKCGIPLTLPPIDAKTDCSKV 95

[Close]

BLAST of CmaCh06G010580 vs. TrEMBL
Match: V4VXH9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022824mg PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.8e-18
Identity = 46/96 (47.92%), Postives = 64/96 (66.67%), Query Frame = 1


Query: 27  SCILVAQELSPCLSFIKGSDGGFLGENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSL 86
           SC  V  +L PCLS+++G       + P  +CCSG  K++  AK++  K D+C CI+KSL
Sbjct: 38  SCDEVILDLVPCLSYLRGET-----KQPSAACCSGAQKISNGAKSQAAKKDVCTCIQKSL 97

Query: 87  SMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTDCSEV 123
           + +G YD N IP IP+ CGIP+ +PPID  TDCS+V
Sbjct: 98  ASVGPYDKNLIPLIPQKCGIPLTLPPIDAKTDCSKV 128

[Close]

BLAST of CmaCh06G010580 vs. TrEMBL
Match: A0A061DSH8_THECC (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein, putative OS=Theobroma cacao GN=TCM_005159 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-17
Identity = 45/120 (37.50%), Postives = 75/120 (62.50%), Query Frame = 1


Query: 2   ISALTVIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLGENPPPSCCSG 61
           I+ L ++ +L  S +     ++   SC  V + ++PCL+F+KG  G     +P  +CC G
Sbjct: 5   INFLAMLVLLMLSALATAETSLLAPSCADVTKAVAPCLNFLKGKGGA----DPSQACCDG 64

Query: 62  VTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTDCSE 121
              LA +A+TKND+  +CEC+K +L  +G+YD +R+P I + C + + IPPI++ TDCS+
Sbjct: 65  ARDLAKEARTKNDRQAICECLKTALGKVGSYDASRVPLIAKKCNVDINIPPINDKTDCSK 120

[Close]

BLAST of CmaCh06G010580 vs. TAIR10
Match: AT5G59320.1 (AT5G59320.1 lipid transfer protein 3)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-11
Identity = 38/110 (34.55%), Postives = 60/110 (54.55%), Query Frame = 1


Query: 15  MMVALSQNVDMG-SCILVAQELSPCLSFIKGSDGGFLGENPPPSCCSGVTKLAADAKTKN 74
           + V +  +VD   SC  VA  L+PC +++  S GG +    PPSCC+GV  L + AKT  
Sbjct: 13  LTVCIVASVDAAISCGTVAGSLAPCATYL--SKGGLV----PPSCCAGVKTLNSMAKTTP 72

Query: 75  DKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTDCSEVE 124
           D+   C CI+ +   I   +P+    +P  CG+ +   PI  ST+C+ ++
Sbjct: 73  DRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPY-PISMSTNCNNIK 115

[Close]

BLAST of CmaCh06G010580 vs. TAIR10
Match: AT5G59310.1 (AT5G59310.1 lipid transfer protein 4)

HSP 1 Score: 61.2 bits (147), Expect = 5.8e-10
Identity = 33/97 (34.02%), Postives = 53/97 (54.64%), Query Frame = 1


Query: 27  SCILVAQELSPCLSFIKGSDGGFLGENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSL 86
           +C  VA  LSPCL ++  S GG +    PP CC+GV KL   A+T  D+   C C++ + 
Sbjct: 26  TCGTVASSLSPCLGYL--SKGGVV----PPPCCAGVKKLNGMAQTTPDRQQACRCLQSAA 85

Query: 87  SMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTDCSEVE 124
             +   +P+    +P  CG+ +   PI  ST+C+ ++
Sbjct: 86  KGV---NPSLASGLPGKCGVSIPY-PISTSTNCATIK 112

[Close]

BLAST of CmaCh06G010580 vs. TAIR10
Match: AT2G38540.1 (AT2G38540.1 lipid transfer protein 1)

HSP 1 Score: 55.1 bits (131), Expect = 4.1e-08
Identity = 42/126 (33.33%), Postives = 65/126 (51.59%), Query Frame = 1


Query: 1   MISALTVIAMLTSSMMVA--LSQNVDMGSCILVAQELSPCLSFIKGSDGGFLGENPPPSC 60
           M   + +  +L + M+VA  ++ N  + SC  V   L+ C+ ++    GG +    PP+C
Sbjct: 1   MAGVMKLACLLLACMIVAGPITSNAAL-SCGSVNSNLAACIGYVL--QGGVI----PPAC 60

Query: 61  CSGVTKLAADAKTKNDKVDLCECIKKSLSMIGA-YDPNRIPSIPEGCGIPVQIP-PIDNS 120
           CSGV  L + AKT  D+   C CI+ +   +G+  +  R   IP+ CG  V IP  I  S
Sbjct: 61  CSGVKNLNSIAKTTPDRQQACNCIQGAARALGSGLNAGRAAGIPKACG--VNIPYKISTS 117

Query: 121 TDCSEV 123
           T+C  V
Sbjct: 121 TNCKTV 117

[Close]

BLAST of CmaCh06G010580 vs. TAIR10
Match: AT3G08770.2 (AT3G08770.2 lipid transfer protein 6)

HSP 1 Score: 51.2 bits (121), Expect = 6.0e-07
Identity = 37/115 (32.17%), Postives = 59/115 (51.30%), Query Frame = 1


Query: 10  MLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLGENPPPSCCSGVTKLAADA 69
           +L   +++AL       SC  V  +L PCLS++  + GG +    P  CC+G+T L + A
Sbjct: 5   LLAVCLVLALHCGEAAVSCNTVIADLYPCLSYV--TQGGPV----PTLCCNGLTTLKSQA 64

Query: 70  KTKNDKVDLCECIKKSLSMIGAYDPNRIPS---IPEGCGI--PVQIPPIDNSTDC 120
           +T  D+  +C CIK ++  +    P  I +   +P  CG+  P +  P   STDC
Sbjct: 65  QTSVDRQGVCRCIKSAIGGL-TLSPRTIQNALELPSKCGVDLPYKFSP---STDC 109

[Close]

BLAST of CmaCh06G010580 vs. TAIR10
Match: AT3G51600.1 (AT3G51600.1 lipid transfer protein 5)

HSP 1 Score: 50.1 bits (118), Expect = 1.3e-06
Identity = 35/122 (28.69%), Postives = 61/122 (50.00%), Query Frame = 1


Query: 2   ISALTVIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLGENPPPSCCSG 61
           +S L ++ ML ++ M + +      SC  V   L  C +++  + GGF+    P  CCSG
Sbjct: 7   LSTLVIVCMLVTAPMASEAAI----SCGAVTGSLGQCYNYL--TRGGFI----PRGCCSG 66

Query: 62  VTKLAADAKTKNDKVDLCECIKKSLSMIGA-YDPNRIPSIPEGCGIPVQIPPIDNSTDCS 121
           V +L + A+T  D+   C CI+ +   +G+  +  R   +P  C + +   PI   T+C+
Sbjct: 67  VQRLNSLARTTRDRQQACRCIQGAARALGSRLNAGRAARLPGACRVRISY-PISARTNCN 117

Query: 122 EV 123
            V
Sbjct: 127 TV 117

[Close]

BLAST of CmaCh06G010580 vs. NCBI nr
Match: gi|659074983|ref|XP_008437901.1| (PREDICTED: non-specific lipid-transfer protein 3-like [Cucumis melo])

HSP 1 Score: 168.3 bits (425), Expect = 9.5e-39
Identity = 85/137 (62.04%), Postives = 101/137 (73.72%), Query Frame = 1


Query: 4   ALTVIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLGENPPPSCCSGVT 63
           +L  +A+LT S+MV LSQ  D+ SC+ VAQ LSPCL FIKGS        P  SCCSGV 
Sbjct: 9   SLAFVAVLTCSLMVVLSQTEDVESCVPVAQSLSPCLGFIKGSG------KPSASCCSGVK 68

Query: 64  KLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTDCSEVE 123
           +LA + KTK DKV LCECIKKSL+MIG YDP RIP IP+ CGI VQIPPI+NST+CS+V+
Sbjct: 69  QLAGNTKTKKDKVALCECIKKSLAMIGPYDPTRIPLIPKQCGISVQIPPINNSTNCSKVK 128

Query: 124 GFEFGSGMSNEVGNCHH 141
           GF+FGS +  E G  HH
Sbjct: 129 GFQFGSALIYEAGGIHH 139

[Close]

BLAST of CmaCh06G010580 vs. NCBI nr
Match: gi|778676915|ref|XP_004134304.2| (PREDICTED: non-specific lipid-transfer protein Cw18-like [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 1.6e-38
Identity = 83/139 (59.71%), Postives = 101/139 (72.66%), Query Frame = 1


Query: 2   ISALTVIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLGENPPPSCCSG 61
           I +L  +A+ T S+MV LSQN D+ SC+ VAQ L+PCL FIKG+        P  SCCSG
Sbjct: 7   IRSLAFVAVFTCSLMVVLSQNEDLESCVPVAQALAPCLGFIKGNG------KPSASCCSG 66

Query: 62  VTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTDCSE 121
           V +LA D KTK DKV LCEC+KKSLS+IG YDP+RIP IP+ CG+ VQIPPI NSTDCS+
Sbjct: 67  VKQLARDTKTKKDKVALCECVKKSLSVIGTYDPSRIPLIPKQCGVSVQIPPIKNSTDCSK 126

Query: 122 VEGFEFGSGMSNEVGNCHH 141
           V G++FGS +  E G  HH
Sbjct: 127 VTGYQFGSALIYEAGGIHH 139

[Close]

BLAST of CmaCh06G010580 vs. NCBI nr
Match: gi|700201296|gb|KGN56429.1| (hypothetical protein Csa_3G119620 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 1.7e-32
Identity = 74/120 (61.67%), Postives = 89/120 (74.17%), Query Frame = 1


Query: 2   ISALTVIAMLTSSMMVALSQNVDMGSCILVAQELSPCLSFIKGSDGGFLGENPPPSCCSG 61
           I +L  +A+ T S+MV LSQN D+ SC+ VAQ L+PCL FIKG+        P  SCCSG
Sbjct: 7   IRSLAFVAVFTCSLMVVLSQNEDLESCVPVAQALAPCLGFIKGNG------KPSASCCSG 66

Query: 62  VTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTDCSE 121
           V +LA D KTK DKV LCEC+KKSLS+IG YDP+RIP IP+ CG+ VQIPPI NSTDCS+
Sbjct: 67  VKQLARDTKTKKDKVALCECVKKSLSVIGTYDPSRIPLIPKQCGVSVQIPPIKNSTDCSK 120

[Close]

BLAST of CmaCh06G010580 vs. NCBI nr
Match: gi|1012360746|gb|KYP71930.1| (putative non-specific lipid-transfer protein 1 [Cajanus cajan])

HSP 1 Score: 102.1 bits (253), Expect = 8.4e-19
Identity = 48/123 (39.02%), Postives = 80/123 (65.04%), Query Frame = 1


Query: 1   MISALTVIAMLTSSMMVALSQNVDMGS--CILVAQELSPCLSFIKGSDGGFLGENPPPSC 60
           M    T +A L S +++ +++   + S  C  V +E++PC SF++ S      + P  +C
Sbjct: 3   MSRTATFLAGLLSIVILIITRCEALASVPCSTVIEEVAPCTSFLQEST-----KKPSQAC 62

Query: 61  CSGVTKLAADAKTKNDKVDLCECIKKSLSMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTD 120
           CSGV K++ +  TK D+ D+C+C+K+ L+++G YDPN IP +P+ CG+ V++PPID  TD
Sbjct: 63  CSGVKKVSGEGVTKKDRADICQCLKEGLALVGNYDPNLIPQLPKACGLSVKLPPIDKKTD 120

Query: 121 CSE 122
           CS+
Sbjct: 123 CSK 120

[Close]

BLAST of CmaCh06G010580 vs. NCBI nr
Match: gi|641867765|gb|KDO86449.1| (hypothetical protein CISIN_1g039540mg, partial [Citrus sinensis])

HSP 1 Score: 99.4 bits (246), Expect = 5.4e-18
Identity = 46/96 (47.92%), Postives = 64/96 (66.67%), Query Frame = 1


Query: 27  SCILVAQELSPCLSFIKGSDGGFLGENPPPSCCSGVTKLAADAKTKNDKVDLCECIKKSL 86
           SC  V  +L PCLS+++G       + P  +CCSG  K++  AK++  K D+C CI+KSL
Sbjct: 5   SCDEVILDLVPCLSYLRGET-----KQPSAACCSGAQKISNGAKSQAAKKDVCTCIQKSL 64

Query: 87  SMIGAYDPNRIPSIPEGCGIPVQIPPIDNSTDCSEV 123
           + +G YD N IP IP+ CGIP+ +PPID  TDCS+V
Sbjct: 65  ASVGPYDKNLIPLIPQKCGIPLTLPPIDAKTDCSKV 95

The following BLAST results are available for this feature:

BLAST of CmaCh06G010580 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NLT22_PARJU	2.4e-13	34.88	Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica PE=1 SV=1	[more]
NLTP3_HORVU	3.1e-13	35.59	Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1	[more]
NLTP6_AMBAR	1.2e-12	37.50	Non-specific lipid-transfer protein OS=Ambrosia artemisiifolia PE=1 SV=1	[more]
NLT21_PARJU	1.3e-11	32.56	Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica PE=1 SV=1	[more]
NLT41_HORVU	1.7e-11	35.83	Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1	[more]

BLAST of CmaCh06G010580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5X1_CUCSA	1.2e-32	61.67	Non-specific lipid-transfer protein OS=Cucumis sativus GN=Csa_3G119620 PE=3 SV=1	[more]
A0A151TY04_CAJCA	5.8e-19	39.02	Non-specific lipid-transfer protein OS=Cajanus cajan GN=KK1_011210 PE=3 SV=1	[more]
A0A067H3L3_CITSI	3.8e-18	47.92	Non-specific lipid-transfer protein (Fragment) OS=Citrus sinensis GN=CISIN_1g039...	[more]
V4VXH9_9ROSI	3.8e-18	47.92	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022824mg PE=3 SV=1	[more]
A0A061DSH8_THECC	1.1e-17	37.50	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]

BLAST of CmaCh06G010580 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G59320.1	1.1e-11	34.55	lipid transfer protein 3	[more]
AT5G59310.1	5.8e-10	34.02	lipid transfer protein 4	[more]
AT2G38540.1	4.1e-08	33.33	lipid transfer protein 1	[more]
AT3G08770.2	6.0e-07	32.17	lipid transfer protein 6	[more]
AT3G51600.1	1.3e-06	28.69	lipid transfer protein 5	[more]

BLAST of CmaCh06G010580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074983\|ref\|XP_008437901.1\|	9.5e-39	62.04	PREDICTED: non-specific lipid-transfer protein 3-like [Cucumis melo]	[more]
gi\|778676915\|ref\|XP_004134304.2\|	1.6e-38	59.71	PREDICTED: non-specific lipid-transfer protein Cw18-like [Cucumis sativus]	[more]
gi\|700201296\|gb\|KGN56429.1\|	1.7e-32	61.67	hypothetical protein Csa_3G119620 [Cucumis sativus]	[more]
gi\|1012360746\|gb\|KYP71930.1\|	8.4e-19	39.02	putative non-specific lipid-transfer protein 1 [Cajanus cajan]	[more]
gi\|641867765\|gb\|KDO86449.1\|	5.4e-18	47.92	hypothetical protein CISIN_1g039540mg, partial [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000528	Plant_LTP
IPR016140	Bifunc_inhib/LTP/seed_store

Vocabulary: **Biological Process**
Term	Definition
GO:0006869	lipid transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0008289	lipid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005623	cell
cellular_component	GO:0016020	membrane
molecular_function	GO:0008289	lipid binding
molecular_function	GO:0015035	protein disulfide oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G010580.1	CmaCh06G010580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000528	Plant lipid transfer protein/Par allergen	PRINTS	PR00382	LIPIDTRNSFER	coord: 27..43 score: 2.2E-9coord: 110..121 score: 2.2E-9coord: 74..89 score: 2.2E-9coord: 91..108 score: 2.
IPR000528	Plant lipid transfer protein/Par allergen	PROSITE	PS00597	PLANT_LTP	coord: 100..122 scor
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF00234	Tryp_alpha_amyl	coord: 25..110 score: 1.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 28..119 score: 3.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	unknown	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 27..121 score: 2.08
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 27..122 score: 2.2
None	No IPR available	PANTHER	PTHR33076	FAMILY NOT NAMED	coord: 7..127 score: 3.6
None	No IPR available	PANTHER	PTHR33076:SF9	SUBFAMILY NOT NAMED	coord: 7..127 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh06G010580	Cla021161	Watermelon (97103) v1	cmawmB801
CmaCh06G010580	Csa3G119620	Cucumber (Chinese Long) v2	cmacuB829
CmaCh06G010580	ClCG05G000860	Watermelon (Charleston Gray)	cmawcgB741
CmaCh06G010580	CSPI03G07980	Wild cucumber (PI 183967)	cmacpiB842
CmaCh06G010580	CmoCh14G021690	Cucurbita moschata (Rifu)	cmacmoB793
CmaCh06G010580	CmoCh06G010430	Cucurbita moschata (Rifu)	cmacmoB831
CmaCh06G010580	Lsi05G021190	Bottle gourd (USVL1VR-Ls)	cmalsiB759
CmaCh06G010580	Cp4.1LG03g16090	Cucurbita pepo (Zucchini)	cmacpeB831
CmaCh06G010580	CsaV3_3G008100	Cucumber (Chinese Long) v3	cmacucB0978
CmaCh06G010580	Cla97C05G081020	Watermelon (97103) v2	cmawmbB860
CmaCh06G010580	Bhi01G000346	Wax gourd	cmawgoB1010
CmaCh06G010580	CsGy3G008120	Cucumber (Gy14) v2	cgybcmaB441
CmaCh06G010580	Carg20891	Silver-seed gourd	carcmaB1375

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh06G010580	CmaCh00G002890	Cucurbita maxima (Rimu)	cmacmaB019
CmaCh06G010580	CmaCh14G021060	Cucurbita maxima (Rimu)	cmacmaB279

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh06G010580	Cucurbita pepo (Zucchini)	cmacpeB847
CmaCh06G010580	Melon (DHL92) v3.6.1	cmamedB863
CmaCh06G010580	Melon (DHL92) v3.6.1	cmamedB871
CmaCh06G010580	Cucumber (Chinese Long) v3	cmacucB0965
CmaCh06G010580	Cucumber (Gy14) v1	cgycmaB0724
CmaCh06G010580	Cucurbita moschata (Rifu)	cmacmoB829
CmaCh06G010580	Melon (DHL92) v3.5.1	cmameB770