ClCG01G012230 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G012230
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Ferredoxin
Location	CG_Chr01 : 22270006 .. 22270834 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCTGCCATTTCTTACCTCTGCCATATGCAAGTTCATTGTTGGTGCTTGCTGGATGTGCTCTATATTTCAAATATTCTGTTAGATTTTAGCTATTTGCTTGTTTCCTGGTGTAGCCTTTACGTTTCTCACATGCTTTTAGCCTTTGGTTGATTTGATTTGTAAACAAAACCATTTTAATGTGTTTCATGAATTTAGGAGCAGAAATGTCAACCATGTCAACTGCAAAGCTCCCTACCCGCTGCATGTACAACGCGCCGTGTAAAAATCAACTCAGAAGTGCCATAATCAAGTGTCCATGGTCAATTGGATCTACGAGCAACATTTCAAAATCATTTAGCTTGAAATCATGTCCCTCATTCAGAGCCTGTGCAATGGCAGTTTACAAGATTAAACTGGTTGAACCATGTGGGAAAGAGCATGAGTTTGAGGCATCTGATGATACTTACATTCTTGATGCAGCTGAAGAAGCAGGAGTTGACTTACCTTATTCTTGCAGGGCAGGCGCGTGTTCTACGTGCGCCGGGAAAATGGTTTCGGGTTCAGTTGATCAGTCGGATGGGTCGTTCCTTGATGATAGTCAAATGGCAGAGGGTTATTTGTTAACCTGCGTTTCATTACCAACGGCGGACTGTGTGATTCACACACATAAGGAAGGAGAACTGATCTGAGTATGATAGTGAGTTTGTGTGATAGAGTGTTTTCTTTCATGGTTTTCATTTGTAATGTCATAAAAAATAAAATTAAAAAAAAAAGAAGAAAATAAATCATGTGTGAACTCTCTTCCTGCATTATCCTTTTTATTTACTAGTAACATTATGCACGAG

mRNA sequence

ATGGTTCTGCCATTTCTTACCTCTGCCATATGCAAGTTCATTGTTGGAGCAGAAATGTCAACCATGTCAACTGCAAAGCTCCCTACCCGCTGCATGTACAACGCGCCGTGTAAAAATCAACTCAGAAGTGCCATAATCAAGTGTCCATGGTCAATTGGATCTACGAGCAACATTTCAAAATCATTTAGCTTGAAATCATGTCCCTCATTCAGAGCCTGTGCAATGGCAGTTTACAAGATTAAACTGGTTGAACCATGTGGGAAAGAGCATGAGTTTGAGGCATCTGATGATACTTACATTCTTGATGCAGCTGAAGAAGCAGGAGTTGACTTACCTTATTCTTGCAGGGCAGGCGCGTGTTCTACGTGCGCCGGGAAAATGGTTTCGGGTTCAGTTGATCAGTCGGATGGGTCGTTCCTTGATGATAGTCAAATGGCAGAGGGTTATTTGTTAACCTGCGTTTCATTACCAACGGCGGACTGTGTGATTCACACACATAAGGAAGGAGAACTGATCTGAGTATGATAGTGAGTTTGTGTGATAGAGTGTTTTCTTTCATGGTTTTCATTTGTAATGTCATAAAAAATAAAATTAAAAAAAAAAGAAGAAAATAAATCATGTGTGAACTCTCTTCCTGCATTATCCTTTTTATTTACTAGTAACATTATGCACGAG

Coding sequence (CDS)

ATGGTTCTGCCATTTCTTACCTCTGCCATATGCAAGTTCATTGTTGGAGCAGAAATGTCAACCATGTCAACTGCAAAGCTCCCTACCCGCTGCATGTACAACGCGCCGTGTAAAAATCAACTCAGAAGTGCCATAATCAAGTGTCCATGGTCAATTGGATCTACGAGCAACATTTCAAAATCATTTAGCTTGAAATCATGTCCCTCATTCAGAGCCTGTGCAATGGCAGTTTACAAGATTAAACTGGTTGAACCATGTGGGAAAGAGCATGAGTTTGAGGCATCTGATGATACTTACATTCTTGATGCAGCTGAAGAAGCAGGAGTTGACTTACCTTATTCTTGCAGGGCAGGCGCGTGTTCTACGTGCGCCGGGAAAATGGTTTCGGGTTCAGTTGATCAGTCGGATGGGTCGTTCCTTGATGATAGTCAAATGGCAGAGGGTTATTTGTTAACCTGCGTTTCATTACCAACGGCGGACTGTGTGATTCACACACATAAGGAAGGAGAACTGATCTGA

Protein sequence

MVLPFLTSAICKFIVGAEMSTMSTAKLPTRCMYNAPCKNQLRSAIIKCPWSIGSTSNISKSFSLKSCPSFRACAMAVYKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDGSFLDDSQMAEGYLLTCVSLPTADCVIHTHKEGELI

Homology

[Close]

BLAST of ClCG01G012230 vs. Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.7e-45
Identity = 93/151 (61.59%), Postives = 106/151 (70.20%), Query Frame = 1


Query: 22  MSTAKLPTRCMYNAPCKN-QLRSAIIKCPWSIGSTSNISKSFSLKSCPSFRACAMAVYKI 81
           MST+   T C      +  Q     +K P S+   S ++K  SLK+       AMAVYK+
Sbjct: 1   MSTSTFATSCTLLGNVRTTQASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVSAMAVYKV 60

Query: 82  KLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDGSFL 141
           KLV P G+EHEF+A DD YILDAAE AGV+LPYSCRAGACSTCAGK+ SGSVDQSDGSFL
Sbjct: 61  KLVGPEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFL 120

Query: 142 DDSQMAEGYLLTCVSLPTADCVIHTHKEGEL 172
           DD Q  EGY+LTCVS P +DCVIHTHKEG+L
Sbjct: 121 DDGQQEEGYVLTCVSYPKSDCVIHTHKEGDL 151

[Close]

BLAST of ClCG01G012230 vs. Swiss-Prot
Match: FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.6e-43
Identity = 91/154 (59.09%), Postives = 112/154 (72.73%), Query Frame = 1


Query: 22  MSTAKLPTRCMYNAPCKNQLRSAII---KCPWSIGSTSNISKSFSLK-SCPSFRACAMAV 81
           M+T ++ +  M  A  ++Q  + +I       S+GST  +S+SF LK S  S  A   AV
Sbjct: 1   MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAV 60

Query: 82  YKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDG 141
           YK+KL+ P G+E EFE  DD YILDAAEEAGVDLPYSCRAGACSTCAG++VSG+VDQSDG
Sbjct: 61  YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG 120

Query: 142 SFLDDSQMAEGYLLTCVSLPTADCVIHTHKEGEL 172
           SFL+DS + +GY+LTCV+ P +DCVIHTHKE EL
Sbjct: 121 SFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154

[Close]

BLAST of ClCG01G012230 vs. Swiss-Prot
Match: FER6_MAIZE (Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.0e-38
Identity = 89/162 (54.94%), Postives = 106/162 (65.43%), Query Frame = 1


Query: 19  MSTMSTAKLP---TRCMYN-----APCKNQLRSAIIKCPWSIGSTSNISKSFSLKSCPSF 78
           MST +  +LP   +   Y+     AP  N L  A        G     +++   +    F
Sbjct: 1   MSTATAPRLPAPRSGASYHYQTTAAPAANTLSFA--------GHARQAARASGPRLSSRF 60

Query: 79  RACAMAV-YKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVS 138
            A A AV +K+KLV P G EHEFEA DDTYIL+AAE AGV+LP+SCRAG+CSTCAG+M +
Sbjct: 61  VASAAAVLHKVKLVGPDGTEHEFEAPDDTYILEAAETAGVELPFSCRAGSCSTCAGRMSA 120

Query: 139 GSVDQSDGSFLDDSQMAEGYLLTCVSLPTADCVIHTHKEGEL 172
           G VDQS+GSFLDD QMAEGYLLTC+S P ADCVIHTHKE +L
Sbjct: 121 GEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKEEDL 154

[Close]

BLAST of ClCG01G012230 vs. Swiss-Prot
Match: FER2_RAPSA (Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.6e-35
Identity = 68/96 (70.83%), Postives = 80/96 (83.33%), Query Frame = 1


Query: 76  AVYKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQS 135
           AVYK+KL+ P G+E+EFE  DD +ILDAAEEAGVDLPYSCRAGACSTCAG++V G VDQS
Sbjct: 2   AVYKVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQS 61

Query: 136 DGSFLDDSQMAEGYLLTCVSLPTADCVIHTHKEGEL 172
           +GSFL+D    +G++LTCV+ P +DCVIHTHKE EL
Sbjct: 62  EGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETEL 97

[Close]

BLAST of ClCG01G012230 vs. Swiss-Prot
Match: FER1_RAPSA (Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.6e-35
Identity = 69/96 (71.88%), Postives = 78/96 (81.25%), Query Frame = 1


Query: 76  AVYKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQS 135
           AVYK+KL+ P G+E+EF+  DD YILDAAEEAGVDLPYSCRAGACSTCAGK+  G VDQS
Sbjct: 2   AVYKVKLIGPDGQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQS 61

Query: 136 DGSFLDDSQMAEGYLLTCVSLPTADCVIHTHKEGEL 172
           DGSFL+D    +GY+LTCV+ P +D VIHTHKE EL
Sbjct: 62  DGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEEL 97

[Close]

BLAST of ClCG01G012230 vs. TrEMBL
Match: A0A0A0LY90_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G163160 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 1.4e-70
Identity = 134/154 (87.01%), Postives = 138/154 (89.61%), Query Frame = 1


Query: 19  MSTMSTAKLPTRCMYNAPCKNQLRSAIIKCPWSIGSTSNISKSFSLKSCPSFRACAMAVY 78
           MSTMSTAKLPT  MYN   KNQL S IIKCP SIGST NI KSF L S PSFRACAMA +
Sbjct: 1   MSTMSTAKLPTHFMYNTQSKNQLGSTIIKCPSSIGSTRNILKSFGLNSRPSFRACAMAAF 60

Query: 79  KIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDGS 138
           KIKLVEPCGKEHEFEASDDTYILDAAEEAG+DLPYSCRAGACSTCAGK+VSGSVDQSDGS
Sbjct: 61  KIKLVEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKIVSGSVDQSDGS 120

Query: 139 FLDDSQMAEGYLLTCVSLPTADCVIHTHKEGELI 173
           FLDD QMA GYLLTC+SLPTADCVIHTHKEGELI
Sbjct: 121 FLDDDQMANGYLLTCISLPTADCVIHTHKEGELI 154

[Close]

BLAST of ClCG01G012230 vs. TrEMBL
Match: F6HHG1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0080g00410 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 8.6e-57
Identity = 107/150 (71.33%), Postives = 126/150 (84.00%), Query Frame = 1


Query: 22  MSTAKLPTRCMYNAPCKNQLRSAIIKCPWSIGSTSNISKSFSLKSCPSFRACAMAVYKIK 81
           MST  LPT CM+ +  +N++ SA I+ P S+GS  +ISK+F LKS P FRA AMAVYKIK
Sbjct: 30  MSTVNLPTHCMFRSATQNRIASAFIRSPSSLGSVKSISKAFGLKSSPCFRATAMAVYKIK 89

Query: 82  LVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDGSFLD 141
           L+ P G+EHEF+A DD YILD+AE AGV+LPYSCRAGACSTCAG+MVSGSVDQSDGSFLD
Sbjct: 90  LIGPEGEEHEFDAPDDAYILDSAENAGVELPYSCRAGACSTCAGQMVSGSVDQSDGSFLD 149

Query: 142 DSQMAEGYLLTCVSLPTADCVIHTHKEGEL 172
           D QM +GYLLTC+S PT+DCVIHTHKEG+L
Sbjct: 150 DKQMEKGYLLTCISYPTSDCVIHTHKEGDL 179

[Close]

BLAST of ClCG01G012230 vs. TrEMBL
Match: A5B3C7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038770 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.5e-56
Identity = 107/150 (71.33%), Postives = 125/150 (83.33%), Query Frame = 1


Query: 22  MSTAKLPTRCMYNAPCKNQLRSAIIKCPWSIGSTSNISKSFSLKSCPSFRACAMAVYKIK 81
           MST  LPT CM+ +  +N + SA I+ P S+GS  +ISK+F LKS P FRA AMAVYKIK
Sbjct: 1   MSTVNLPTHCMFRSATQNXIASAFIRSPSSLGSVKSISKAFGLKSSPCFRATAMAVYKIK 60

Query: 82  LVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDGSFLD 141
           L+ P G+EHEF+A DD YILD+AE AGV+LPYSCRAGACSTCAG+MVSGSVDQSDGSFLD
Sbjct: 61  LIGPEGEEHEFDAPDDAYILDSAENAGVELPYSCRAGACSTCAGQMVSGSVDQSDGSFLD 120

Query: 142 DSQMAEGYLLTCVSLPTADCVIHTHKEGEL 172
           D QM +GYLLTC+S PT+DCVIHTHKEG+L
Sbjct: 121 DKQMEKGYLLTCISYPTSDCVIHTHKEGDL 150

[Close]

BLAST of ClCG01G012230 vs. TrEMBL
Match: V7AFQ6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G094400g PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 5.6e-56
Identity = 107/154 (69.48%), Postives = 129/154 (83.77%), Query Frame = 1


Query: 19  MSTMSTAKLPTRCMYNAPCKNQLRSAI-IKCPWSIGSTSNISKSFSLKSCPSFRACAMAV 78
           M+T+ST K+ + CM+  P KNQ   A  +KCP S+GS  ++S+SF LKS  SFR  AMA 
Sbjct: 1   MATLSTVKVSSHCMFQTPNKNQFTLATTVKCPSSLGSVKSVSRSFGLKSSSSFRVTAMAS 60

Query: 79  YKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDG 138
           YK+KL+ P GKE+EFEASDDTYILDAAE+AGV+LPYSCRAGACSTCAGK+V+GSVDQSDG
Sbjct: 61  YKVKLIGPDGKENEFEASDDTYILDAAEDAGVELPYSCRAGACSTCAGKIVAGSVDQSDG 120

Query: 139 SFLDDSQMAEGYLLTCVSLPTADCVIHTHKEGEL 172
           SFLDD+Q+ EG++LTC+S PTADCVI THKEGEL
Sbjct: 121 SFLDDNQLKEGFVLTCISYPTADCVIETHKEGEL 154

[Close]

BLAST of ClCG01G012230 vs. TrEMBL
Match: A0A0L9V7A9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g137600 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 3.6e-55
Identity = 109/154 (70.78%), Postives = 128/154 (83.12%), Query Frame = 1


Query: 19  MSTMSTAKLPTRCMYNAPCKNQLR-SAIIKCPWSIGSTSNISKSFSLKSCPSFRACAMAV 78
           M+T+S+ K+ + CM+  P KNQ      +KCP S+GS  ++S++F LKS  SFR  AMA 
Sbjct: 1   MATLSSVKVSSHCMFQIPSKNQFTFGTTVKCP-SLGSIKSVSRTFGLKSSSSFRVTAMAS 60

Query: 79  YKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDG 138
           YKIKL+ P GKE+EFEASDDTYILDAAE+AGV+LPYSCRAGACSTCAGK+VSGSVDQSDG
Sbjct: 61  YKIKLIGPDGKENEFEASDDTYILDAAEDAGVELPYSCRAGACSTCAGKIVSGSVDQSDG 120

Query: 139 SFLDDSQMAEGYLLTCVSLPTADCVIHTHKEGEL 172
           SFLDD+QM EG+LLTCVS PTADCVI THKEGEL
Sbjct: 121 SFLDDNQMKEGFLLTCVSYPTADCVIETHKEGEL 153

[Close]

BLAST of ClCG01G012230 vs. TAIR10
Match: AT2G27510.1 (AT2G27510.1 ferredoxin 3)

HSP 1 Score: 177.2 bits (448), Expect = 8.8e-45
Identity = 91/154 (59.09%), Postives = 112/154 (72.73%), Query Frame = 1


Query: 22  MSTAKLPTRCMYNAPCKNQLRSAII---KCPWSIGSTSNISKSFSLK-SCPSFRACAMAV 81
           M+T ++ +  M  A  ++Q  + +I       S+GST  +S+SF LK S  S  A   AV
Sbjct: 1   MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAV 60

Query: 82  YKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDG 141
           YK+KL+ P G+E EFE  DD YILDAAEEAGVDLPYSCRAGACSTCAG++VSG+VDQSDG
Sbjct: 61  YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG 120

Query: 142 SFLDDSQMAEGYLLTCVSLPTADCVIHTHKEGEL 172
           SFL+DS + +GY+LTCV+ P +DCVIHTHKE EL
Sbjct: 121 SFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154

[Close]

BLAST of ClCG01G012230 vs. TAIR10
Match: AT1G10960.1 (AT1G10960.1 ferredoxin 1)

HSP 1 Score: 147.9 bits (372), Expect = 5.7e-36
Identity = 73/115 (63.48%), Postives = 86/115 (74.78%), Query Frame = 1


Query: 56  SNISKSFSLKSCPSF--RACAMAVYKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPY 115
           +N    F LKS  +   R  AMA YK+K + P G E E E  +D Y+LDAAEEAG+DLPY
Sbjct: 31  ANTQSLFGLKSSTARGGRVTAMATYKVKFITPEG-EQEVECEEDVYVLDAAEEAGLDLPY 90

Query: 116 SCRAGACSTCAGKMVSGSVDQSDGSFLDDSQMAEGYLLTCVSLPTADCVIHTHKE 169
           SCRAG+CS+CAGK+VSGS+DQSD SFLDD QM+EGY+LTCV+ PT+D VI THKE
Sbjct: 91  SCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKE 144

[Close]

BLAST of ClCG01G012230 vs. TAIR10
Match: AT1G60950.1 (AT1G60950.1 2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 146.4 bits (368), Expect = 1.7e-35
Identity = 78/155 (50.32%), Postives = 99/155 (63.87%), Query Frame = 1


Query: 20  STMSTAKLPTRCMYNAPCKNQLRSAIIKCPWSIGSTSNISKSFSLKS--CPSFRACAMAV 79
           + +S+A + T  +  +P    LRS           ++N    F LKS      R  AMA 
Sbjct: 4   TALSSAIVGTSFIRRSPAPISLRSL---------PSANTQSLFGLKSGTARGGRVTAMAT 63

Query: 80  YKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDG 139
           YK+K + P G E E E  DD Y+LDAAEEAG+DLPYSCRAG+CS+CAGK+VSGSVDQSD 
Sbjct: 64  YKVKFITPEG-ELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQ 123

Query: 140 SFLDDSQMAEGYLLTCVSLPTADCVIHTHKEGELI 173
           SFLDD Q+ EG++LTC + PT+D  I THKE +++
Sbjct: 124 SFLDDEQIGEGFVLTCAAYPTSDVTIETHKEEDIV 148

[Close]

BLAST of ClCG01G012230 vs. TAIR10
Match: AT5G10000.1 (AT5G10000.1 ferredoxin 4)

HSP 1 Score: 128.6 bits (322), Expect = 3.6e-30
Identity = 54/94 (57.45%), Postives = 74/94 (78.72%), Query Frame = 1


Query: 79  KIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDGS 138
           K+KL+ P G+E E E ++D  IL++AE AG++LPYSCR+G C TC GK+VSG VDQS GS
Sbjct: 55  KVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGS 114

Query: 139 FLDDSQMAEGYLLTCVSLPTADCVIHTHKEGELI 173
           FL++ Q+ +GY+LTC++LP  DCV++THK+ +LI
Sbjct: 115 FLEEEQIQKGYILTCIALPLEDCVVYTHKQSDLI 148

[Close]

BLAST of ClCG01G012230 vs. TAIR10
Match: AT4G14890.1 (AT4G14890.1 2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 84.0 bits (206), Expect = 1.0e-16
Identity = 44/95 (46.32%), Postives = 54/95 (56.84%), Query Frame = 1


Query: 78  YKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDG 137
           YK+ +VE  GK  E E   D  IL  A ++G+D+PY C  G C TC  K+V+G+VDQS G
Sbjct: 53  YKV-VVEHDGKTTELEVEPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTGTVDQS-G 112

Query: 138 SFLDDSQMAEGYLLTCVSLPTADCVIHTHKEGELI 173
             L D  +  GY L C S PT+DC I    E EL+
Sbjct: 113 GMLSDDVVERGYTLLCASYPTSDCHIKMIPEEELL 145

[Close]

BLAST of ClCG01G012230 vs. NCBI nr
Match: gi|700209835|gb|KGN64931.1| (hypothetical protein Csa_1G163160 [Cucumis sativus])

HSP 1 Score: 273.9 bits (699), Expect = 2.0e-70
Identity = 134/154 (87.01%), Postives = 138/154 (89.61%), Query Frame = 1


Query: 19  MSTMSTAKLPTRCMYNAPCKNQLRSAIIKCPWSIGSTSNISKSFSLKSCPSFRACAMAVY 78
           MSTMSTAKLPT  MYN   KNQL S IIKCP SIGST NI KSF L S PSFRACAMA +
Sbjct: 1   MSTMSTAKLPTHFMYNTQSKNQLGSTIIKCPSSIGSTRNILKSFGLNSRPSFRACAMAAF 60

Query: 79  KIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDGS 138
           KIKLVEPCGKEHEFEASDDTYILDAAEEAG+DLPYSCRAGACSTCAGK+VSGSVDQSDGS
Sbjct: 61  KIKLVEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKIVSGSVDQSDGS 120

Query: 139 FLDDSQMAEGYLLTCVSLPTADCVIHTHKEGELI 173
           FLDD QMA GYLLTC+SLPTADCVIHTHKEGELI
Sbjct: 121 FLDDDQMANGYLLTCISLPTADCVIHTHKEGELI 154

[Close]

BLAST of ClCG01G012230 vs. NCBI nr
Match: gi|659071691|ref|XP_008461439.1| (PREDICTED: ferredoxin, root R-B2 [Cucumis melo])

HSP 1 Score: 266.5 bits (680), Expect = 3.1e-68
Identity = 134/154 (87.01%), Postives = 138/154 (89.61%), Query Frame = 1


Query: 19  MSTMSTAKLPTRCMYNAPCKNQLRSAIIKCPWSIGSTSNISKSFSLKSCPSFRACAMAVY 78
           MSTMSTAKLPT  MYN   KNQL S IIKCP SIGST NI KSF L S PSFRA AMAV+
Sbjct: 1   MSTMSTAKLPTHFMYNTQSKNQLGSTIIKCPSSIGSTRNIWKSFGLNSRPSFRARAMAVF 60

Query: 79  KIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDGS 138
           KIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGK+VSGSV+QSDGS
Sbjct: 61  KIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSDGS 120

Query: 139 FLDDSQMAEGYLLTCVSLPTADCVIHTHKEGELI 173
           FLDD QMA+GYLLTCVSLPTADCVIHTHKE ELI
Sbjct: 121 FLDDDQMAKGYLLTCVSLPTADCVIHTHKEEELI 154

[Close]

BLAST of ClCG01G012230 vs. NCBI nr
Match: gi|731394574|ref|XP_010651884.1| (PREDICTED: ferredoxin-3, chloroplastic [Vitis vinifera])

HSP 1 Score: 228.0 bits (580), Expect = 1.2e-56
Identity = 107/150 (71.33%), Postives = 126/150 (84.00%), Query Frame = 1


Query: 22  MSTAKLPTRCMYNAPCKNQLRSAIIKCPWSIGSTSNISKSFSLKSCPSFRACAMAVYKIK 81
           MST  LPT CM+ +  +N++ SA I+ P S+GS  +ISK+F LKS P FRA AMAVYKIK
Sbjct: 46  MSTVNLPTHCMFRSATQNRIASAFIRSPSSLGSVKSISKAFGLKSSPCFRATAMAVYKIK 105

Query: 82  LVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDGSFLD 141
           L+ P G+EHEF+A DD YILD+AE AGV+LPYSCRAGACSTCAG+MVSGSVDQSDGSFLD
Sbjct: 106 LIGPEGEEHEFDAPDDAYILDSAENAGVELPYSCRAGACSTCAGQMVSGSVDQSDGSFLD 165

Query: 142 DSQMAEGYLLTCVSLPTADCVIHTHKEGEL 172
           D QM +GYLLTC+S PT+DCVIHTHKEG+L
Sbjct: 166 DKQMEKGYLLTCISYPTSDCVIHTHKEGDL 195

[Close]

BLAST of ClCG01G012230 vs. NCBI nr
Match: gi|147819070|emb|CAN74125.1| (hypothetical protein VITISV_038770 [Vitis vinifera])

HSP 1 Score: 227.3 bits (578), Expect = 2.1e-56
Identity = 107/150 (71.33%), Postives = 125/150 (83.33%), Query Frame = 1


Query: 22  MSTAKLPTRCMYNAPCKNQLRSAIIKCPWSIGSTSNISKSFSLKSCPSFRACAMAVYKIK 81
           MST  LPT CM+ +  +N + SA I+ P S+GS  +ISK+F LKS P FRA AMAVYKIK
Sbjct: 1   MSTVNLPTHCMFRSATQNXIASAFIRSPSSLGSVKSISKAFGLKSSPCFRATAMAVYKIK 60

Query: 82  LVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDGSFLD 141
           L+ P G+EHEF+A DD YILD+AE AGV+LPYSCRAGACSTCAG+MVSGSVDQSDGSFLD
Sbjct: 61  LIGPEGEEHEFDAPDDAYILDSAENAGVELPYSCRAGACSTCAGQMVSGSVDQSDGSFLD 120

Query: 142 DSQMAEGYLLTCVSLPTADCVIHTHKEGEL 172
           D QM +GYLLTC+S PT+DCVIHTHKEG+L
Sbjct: 121 DKQMEKGYLLTCISYPTSDCVIHTHKEGDL 150

[Close]

BLAST of ClCG01G012230 vs. NCBI nr
Match: gi|593203955|ref|XP_007132438.1| (hypothetical protein PHAVU_011G094400g [Phaseolus vulgaris])

HSP 1 Score: 225.3 bits (573), Expect = 8.0e-56
Identity = 107/154 (69.48%), Postives = 129/154 (83.77%), Query Frame = 1


Query: 19  MSTMSTAKLPTRCMYNAPCKNQLRSAI-IKCPWSIGSTSNISKSFSLKSCPSFRACAMAV 78
           M+T+ST K+ + CM+  P KNQ   A  +KCP S+GS  ++S+SF LKS  SFR  AMA 
Sbjct: 1   MATLSTVKVSSHCMFQTPNKNQFTLATTVKCPSSLGSVKSVSRSFGLKSSSSFRVTAMAS 60

Query: 79  YKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDG 138
           YK+KL+ P GKE+EFEASDDTYILDAAE+AGV+LPYSCRAGACSTCAGK+V+GSVDQSDG
Sbjct: 61  YKVKLIGPDGKENEFEASDDTYILDAAEDAGVELPYSCRAGACSTCAGKIVAGSVDQSDG 120

Query: 139 SFLDDSQMAEGYLLTCVSLPTADCVIHTHKEGEL 172
           SFLDD+Q+ EG++LTC+S PTADCVI THKEGEL
Sbjct: 121 SFLDDNQLKEGFVLTCISYPTADCVIETHKEGEL 154

The following BLAST results are available for this feature:

BLAST of ClCG01G012230 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FER3_MAIZE	1.7e-45	61.59	Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1	[more]
FER3_ARATH	1.6e-43	59.09	Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1	[more]
FER6_MAIZE	2.0e-38	54.94	Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1	[more]
FER2_RAPSA	1.6e-35	70.83	Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1	[more]
FER1_RAPSA	4.6e-35	71.88	Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1	[more]

BLAST of ClCG01G012230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY90_CUCSA	1.4e-70	87.01	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G163160 PE=4 SV=1	[more]
F6HHG1_VITVI	8.6e-57	71.33	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0080g00410 PE=4 SV=...	[more]
A5B3C7_VITVI	1.5e-56	71.33	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038770 PE=4 SV=1	[more]
V7AFQ6_PHAVU	5.6e-56	69.48	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G094400g PE=4 SV=1	[more]
A0A0L9V7A9_PHAAN	3.6e-55	70.78	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g137600 PE=4 SV=1	[more]

BLAST of ClCG01G012230 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27510.1	8.8e-45	59.09	ferredoxin 3	[more]
AT1G10960.1	5.7e-36	63.48	ferredoxin 1	[more]
AT1G60950.1	1.7e-35	50.32	2Fe-2S ferredoxin-like superfamily protein	[more]
AT5G10000.1	3.6e-30	57.45	ferredoxin 4	[more]
AT4G14890.1	1.0e-16	46.32	2Fe-2S ferredoxin-like superfamily protein	[more]

BLAST of ClCG01G012230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209835\|gb\|KGN64931.1\|	2.0e-70	87.01	hypothetical protein Csa_1G163160 [Cucumis sativus]	[more]
gi\|659071691\|ref\|XP_008461439.1\|	3.1e-68	87.01	PREDICTED: ferredoxin, root R-B2 [Cucumis melo]	[more]
gi\|731394574\|ref\|XP_010651884.1\|	1.2e-56	71.33	PREDICTED: ferredoxin-3, chloroplastic [Vitis vinifera]	[more]
gi\|147819070\|emb\|CAN74125.1\|	2.1e-56	71.33	hypothetical protein VITISV_038770 [Vitis vinifera]	[more]
gi\|593203955\|ref\|XP_007132438.1\|	8.0e-56	69.48	hypothetical protein PHAVU_011G094400g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001041	2Fe-2S_ferredoxin-type
IPR006058	2Fe2S_fd_BS
IPR010241	Fd_pln
IPR012675	Beta-grasp_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0009055	electron carrier activity
GO:0051536	iron-sulfur cluster binding
GO:0051537	2 iron, 2 sulfur cluster binding

Vocabulary: **Biological Process**
Term	Definition
GO:0022900	electron transport chain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0022900	electron transport chain
biological_process	GO:0006412	translation
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009536	plastid
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G012230.1	ClCG01G012230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 84..158 score: 3.5
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROFILE	PS51085	2FE2S_FER_2	coord: 78..169 score: 12
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	unknown	SSF54292	2Fe-2S ferredoxin-like	coord: 75..169 score: 6.16
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 115..123 scor
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAMs	TIGR02008	TIGR02008	coord: 76..171 score: 1.2
IPR012675	Beta-grasp domain	GENE3D	G3DSA:3.10.20.30		coord: 83..171 score: 2.1
None	No IPR available	PANTHER	PTHR19370	NADH-CYTOCHROME B5 REDUCTASE	coord: 22..171 score: 3.8
None	No IPR available	PANTHER	PTHR19370:SF127	SUBFAMILY NOT NAMED	coord: 22..171 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G012230	Csa1G163160	Cucumber (Chinese Long) v2	cuwcgB024
ClCG01G012230	MELO3C004712	Melon (DHL92) v3.5.1	mewcgB141
ClCG01G012230	Cla001097	Watermelon (97103) v1	wcgwmB149
ClCG01G012230	Cla97C01G011570	Watermelon (97103) v2	wcgwmbB089
ClCG01G012230	Bhi08G000048	Wax gourd	wcgwgoB232
ClCG01G012230	CSPI01G14710	Wild cucumber (PI 183967)	cpiwcgB027
ClCG01G012230	Cucsa.199720	Cucumber (Gy14) v1	cgywcgB370
ClCG01G012230	CmaCh18G006570	Cucurbita maxima (Rimu)	cmawcgB341
ClCG01G012230	CmoCh18G006650	Cucurbita moschata (Rifu)	cmowcgB346
ClCG01G012230	Lsi03G001200	Bottle gourd (USVL1VR-Ls)	lsiwcgB231
ClCG01G012230	Cp4.1LG09g05620	Cucurbita pepo (Zucchini)	cpewcgB029
ClCG01G012230	CsGy1G014590	Cucumber (Gy14) v2	cgybwcgB023
ClCG01G012230	MELO3C004712.2	Melon (DHL92) v3.6.1	medwcgB133
ClCG01G012230	Carg26273	Silver-seed gourd	carwcgB0000
ClCG01G012230	CsaV3_1G014830	Cucumber (Chinese Long) v3	cucwcgB026

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G012230	Cucurbita maxima (Rimu)	cmawcgB183
ClCG01G012230	Cucurbita maxima (Rimu)	cmawcgB188
ClCG01G012230	Cucurbita moschata (Rifu)	cmowcgB000
ClCG01G012230	Watermelon (97103) v1	wcgwmB148
ClCG01G012230	Watermelon (97103) v1	wcgwmB158