CmaCh18G006570 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh18G006570
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Ribosomal protein
Location	Cma_Chr18 : 5989154 .. 5995347 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGTCAAAAGCGAATGAGTTCATCAGCCCCCATGTAACTCGAAGTTCTTCCTTTCTTGAATTGTATGGAACAAGGGAAAACAAGATTTTGCATAACTTTAGATTCATTGATATGTATATTGATATTGGTTTTGTGATATGTATATTCAATTTTGAGTTTGGTAGATATCTAACTTTTAAAATTTGAATAAATTTTAAAAACTTGCTGGTATAAGGAAAACACGTTTTATTTTGAAGTTCTTATAATTTAGTTTATTGAAAACGAAAATGCACTTGGTTGGGTAGCAACTTTCAATTATTTTAAACTAATTTTAGTCATCTTATTTTCAGAATCGCTCTCATTCAGATGTAATCTCAGTTCATTCATGTACTCTCATTTACTCGGATGTCACGTGCTAAACAGCTTTCGCCAAGATTCATTCTTGAACTACATCTCTACTGAGAGATGTACCGCTCTGATACTATTTATAATACCTCAGGCCCAGAATTTGGATCAATTGTTGAATCCGACTTCCAAATCGTAGGCACATTGGGCTGCAAAATCCTTGATATATATTCCCCTTCAAAGTTGCCAAGATGTAATTATAATCTTTTTCTTATTAGTAATTTATCATTTTATTTGTTAATTATTTTTATTTTTATAAGGGTCTAGAAAATAGTTAAATGGGCTTCTAGGCCCATGAAGGTATCCAAGCAAATTGGACGGCCCAGTTTCAACGCTCTATCTCTCACTTAGGCACGTATATATTTTCCTTTCTCTAAACCCTAATTTCTTCATCTCTTTCTTTTCCTCCGGTAAGCCGTCGCTTCTCATACTTTCCCTCTTCAAGTCACAACCTTTTAGCATTACAATAATTCTCAGTTCATGCTTTTTTGAGTTTTCCGCATTTATTCTCTGTTAGTGCTTTCTTTTTGGTCCGATTTGCAGTTTTGTTTCGTTTACTGCTCATGTTCATGTTAGTTTCTCGATTGTTTTTTGCTTTTGGTCAAGGATCTTACGTTTTTTGAACTCTGTTTGTGCACAGGACTTAAGTGTAGAGCATCTTTGCAAAGGCGAAGATTCGAATATGAGGTATTTTTTACAGCATTTTCTTTCGTTTGGATATCTGTTTTGATTTCTGATTTATGCTTGTATATGAATTTAGCTGGTTATGATGGATGGACACACGTTATTTACTTTCTTCGATTATACTGTTTTGAGTTTTTTGGTGGCTGTTCTTTGGAATAATCGATTCTGGTTAATTTAATCTACCATCTCGAGTATTGTGATGTTTTGAGAATGTTATGGATGGATCATATTTAGGAAGTAGGTTTGCATTCATGTGCTTCTTTTAAAATTTCAGCGTAGCATCGTTTTGATTATACCTAGTGTTTGGGGGTCTTATTTTGTCATCATTTCTTTCTACAGTAAGCTTCAGAGTGAGGCATTGAGAGAAGCTATCTCATCTATCTTCACTGATAGCAATGACAAAAAGAGAAATTTTACTGAGACCATTGAGCTTCAGATCGGGCTGAAGAACTATGACCCTCAAAAGGACAAGCGTTTCAGTGGTTCTGTGAAGTTGCCGCACATTCCCCGTCCCAAGATGAAGCTTTGCATGCTTGGAGATGCCTTGCACGTTGAGGAGGTAATTTTACTTCCTAAATCTTTAACAATTCTTTTTGCTACCCATAGTAATTTATTTTCTAATGTTCATAATTTGTAACTTGGCATATTTATGGTTGTCTAATCAAATTTAATTTTATCCTATCTGTTAATATGTTCTCTGTTCCTGTACTCCTACTGTTTAAGGATTTCTGGTGCGTATGAGCCTAAATACTAACGTTTCAAATGATTTGATATCAGTTCATGACCACTTTCTGTATTGTGGTTGTTTATTAAGTGGATAATTTGACGCGTATCAATTCACCGGTTCTACCTGTATTTAGTTTTCCATATGCTTAGTGTCCCTATCCTGACAGTGTTTCATTAAAATATATTTCAGGCCGAAAAGATTGGTCTAGACTATATGGATGTGGAAGGCTTGAAGAAGCTAAACAAGAACAAGAAATTGGTGAAGAAGCTTGCCAAGAAATACCATGCCTTTTTGGCATCTGAGGCTGTAATTAAGCAGATCCCACGTCTTCTGGGCCCTGGTCTCAACAAAGCAGGCAAGAACATTCCTTAAACATACTGTTTTACTGTTTTTCTTCACCAAATTCTATAATTGATAACCTCCTGAAACCTCGATCCTTGTTTATGTTTCACAGAAAGGAAGGTAGTCAAAGCTAGAACTTTTATCGGATCGTATTATATGCTAAGTCTGTTTCCTCCACCCTTTTTGCCATTCCAGGAAAGTTCCCAACATTGGTGACACACCAAGAATCGCTGGAATCGAAAGTTAACGAGACCAAGGCAATGGTCAAATTTCAACTTAAGAAGGTTCTTTGCATGGGGGTTGCCGTTGGGAATGTTGCCATGGAGGAGAAGCAAGTCTTCCAAAACGTGCAAATGAGCGTTAATTTCCTGGTTTCGTTGTTGAAAAAGAACTGGCAGAACGTAAGTTCCATCTCGGTTCTTGCATTAAACTTGAACTTGATCTGTTTCATCATTTTCACTCATGGGTTATTGCTCGTTTCTTGCAGGTTAGGTGCCTGTATCTGAAGAGCACAATGGGGAAGTCATACAGGGTTTTCTAAGCTCTGTTAGGAAACTTGTCAATCCTGTGTTCGTTCCTTTTATTGTTGAAGTTATTTTCTCGAAGAGCAGTTTTGTGAATTGAGCGTTTTTGGATATGATTCTTGAATTAAGAAACAAGGATGCGTTTTCTCCTTTAAATAGTGAACTATTGATAATGAAACTTCTATTCATACTAACCCAACCCACATCATCACGTTTGTTTACATGATTTGTTACATTTACTGCGGCTGGTGGTATTACAAGTTTTGGTATCTCTTCTGAAATCACTGACACTTTACAACAGAGTAAGGCTAGTCCCTCTTCATAATAGAGGAGTTTTAAAACTATAAGACTGACAACAATACACAACCTAGGGTGGATTGAGCGCTTCCAAATAATTGATATGAAATACAGAAGAGATACCAAAACTTGTAATACCCGTATTACAAGTTTTGGTATCTCTTCTGTATTTCATATCAATTATTTGGAAGCGCTCAATCCACCCTAGGTTGTGTATTGTTGTCAGTCTTATAGTTTTAAAACTCCTCTATTATGAAGAGGGACTAGCCTTACTCTGTTGTAAAGTGTCAGTGATTTGGTTTTGATACAAACAGTATAACAGTTTAAATTTATTGTTAGAAGATATTGTCCTTGGGTGTAGACTTATTCTTCATACTATTGATAACCGTCTAAATTTATTGCTAGTGGATATTGTCGTGTAAGCTTGAAGTAGGTTTTCATATTTAGAAAAAGAATGTAATCAAACCGTTCTAACCCACAGTACAATGGTTTCAACAAACACCATTTGAGATGAGTTCTCCAATTTTGTCACTTATTATGCAATTTGTAACTTGTAAAGTGGTATCTTCAGCAGCCACCAGTGATGACTCAACTCCAAAATAATATTCATCCTTAACTTTTTAAAAATATTATTGTTATTAGTTGGAAATCAATTTGAATTCGACTACTAAAAACTTAAAATATTCAAAAATGGTTGATGAAACGGGCCACAATATCATATAATATTGAGATACAATTTGGGGCATATGGCTATAAGTAGAAAATCTCTATATAGCCATAAGTAAAGAAACCACCCTGACTTAAACTCGAGGTAGAAAAAATTAACGATTAGTCGCATCTCTCAATAGTATATTTTGAGACATTTTAGCTTTGACGGGTGTAGATATGATTTTGGTGAACGGTCATACACACTCATATTAATAAAGACCTATCAAAGACAAAAGCATGTAAAAAAGGTTTGAAACGAGTATGCAATCATGGACAAGCATGACTGGGATATCCAACATAGCAACACACCTTAAATAAGCACGGTGACATTCAACAACCTCTAATAGACTCTGAGTACCTCAAAACAAAATATCTTCAGAATTGGTTGATGAAACGGGCCACATGGAATGATTGTCTTCAAAAGTCAGAGATGGGTAACCACGTTTATAGTTTATAGAGCGAAGGGAGGTTGATCGGTGCCTGAATTGGCTCTTGGAAGCTTGCAAATGGCACAATCTCCACTCCCTTCGCCTCCTCTTGGCCTTTCTGCACATCCCAAAAGCCAGTTTCTCTCCCTTTCTCTCCTCTTTATTTATATGCTCTTCCACATTGCCCTAATCGTCGCATCATTCAACCTCTAGGGCTGCGTTTCGTTTTGTACCTTCGCTTTCTCCGCCGCCTCCACCGCCTCCCTCTCTCTCTCCCTCTCTCTCTCCCTCTCCGTAAGCTTCTCTTTCCGTTTTCCCCCTTTTCTCTTGTTTCTTTCGCATTTTTCTCGATCATGAAATTTGTTATGTTTTTATTTGATCTCTGTGTTTTTGTTTGATAATCTATTTCTACTTTATCCCTTGCAAATCGACTAATTGCTTGCTTGAAAAGAAAGAATGAGTTTGATAGATTGGAAAGCGTATTATGTAACACCAGTAGCTTGATTGTTGTTTCGATTTTTTTAAATGTTATGAAATAGAATTTTGGAATGATTCTGAACAAATGGAGGTGAGATGTAATTACTTTATGGAGCTTCGAGTGAAGAGCAGAGAAGGCATTAGGCTGCATCTTCTCATAATGCTCCATACATCAATTTCCTCCATAAACAATGAATAGCTATACCTTTACTGCTACTCATGTTCTGTGTTTCAGAGGCATACAAAATACCAAAAAGTTTGCTGTACTGGTCACCATTTTCTTAATTTGAATAGTGGATGCCCAATTTTCAGACCATACGGTTAGAGATCCGGCTCTCGAAAATGGTATGATATTGTCCACTTTGAGAATAAGTTCTCATGGCTTTGCTTTGAGCTTTCTTGGCATCATACCAATGGAGATGTTCTCCCCTTGATTCCTTTCTCGGAGTTCTCAAACAAAGTACACCCTTTGTTTGACACTTGTTAAGTTAAGGGCATGACTTTGATATCGTTTGTTTGACACTTGAGGATTCGATTATTATGGTTAAGTTAAGGGCATGACTCTGATAACGTGTTAGGAATCACGACCCTCCACAATGTGTGATATTGTCCACTTTGAGTATAAGCTCTCGCGGCTTTGATTCTCGAAAAGGCCTCGTAACAATGGAGATATATTCCTTACTTATAAACCCATGATCATTCTCTAAATTAGCTAACGAGGGACTCCCCTCCCAATAATCTTATACAAATCCCTCCATTCCAAAGAACAATGGAGAAGAAAATGAAGAAGATAGTTCTTAAATTTTCTTTTGATCATTCATCTTGGTGCTTGCTTGATATATTGTATAGATTTTCTCCATTTGCTTGTAAGCCACACCATTTTAAATGTGATTCATGGATTTAGGACCAAAAATGTCAACCATGTCAACTGCAAAGCTTCCTTCCCGCACCATGTTCAACAGGTCGGCGCCGTGTAAAAACCAATTCAGAAGCAGCATTATTAAGTGTCCATCTTCGATCGGATCCACGAGCAACATATCAAAATCATTCGGCTTGAAATCATTGCACTCATCCAGAACCACAGCAATGGCAGTATACAAGATTAAACTTATCGAACCGTGTGGGAAAGAGCACGAGTTTGAGGCATCTGATGATACCTACATTCTTGATGCAGCTGAAGAAGCAGGAATTGACCTTCCATATTCTTGCAGGGCAGGGGCGTGTTCTACGTGCGCTGGGAAATTCGTTTCGGGTTCAGTCGATCAGTCGGACGGGTCGTTCCTGGACGATAGTCAAATGGAAGAGGGGTATTTGTTAACCTGTATTTCACACCCAACTTCAGACTGTGTGATTCTCACACACAAGGAAGGAGAACTGATCTGAGTATTATATCAGTGTTTTCTTTTTCTTTTATGAGTTTGTAGTTTTGATTTGTAATGTGAGATATTATATCAAATAAATAAAAAAAATAATAAAAAAAATGTAAAATAGTATATGTGAAAGTGATGGCTTAAAGTGACGTCGTTTATCTATTTTGTATTTTCTCTTCTTATGTTGCACGTAAAATTTTGTTGTATTATTGTACTAAATAAAAAACCTTCCTGAGTTTTTTATTTTTTA

mRNA sequence

ATGCTGTCAAAAGCGAATGAGTTCATCAGCCCCCATGACTTAAGTGTAGAGCATCTTTGCAAAGGCGAAGATTCGAATATGAGTAAGCTTCAGAGTGAGGCATTGAGAGAAGCTATCTCATCTATCTTCACTGATAGCAATGACAAAAAGAGAAATTTTACTGAGACCATTGAGCTTCAGATCGGGCTGAAGAACTATGACCCTCAAAAGGACAAGCGTTTCAGTGGTTCTGTGAAGTTGCCGCACATTCCCCGTCCCAAGATGAAGCTTTGCATGCTTGGAGATGCCTTGCACGTTGAGGAGGCCGAAAAGATTGGTCTAGACTATATGGATGTGGAAGGCTTGAAGAAGCTAAACAAGAACAAGAAATTGGTGAAGAAGCTTGCCAAGAAATACCATGCCTTTTTGGCATCTGAGGCTGTAATTAAGCAGATCCCACGTCTTCTGGGCCCTGGAAAGTTCCCAACATTGGTGACACACCAAGAATCGCTGGAATCGAAAGTTAACGAGACCAAGGCAATGGTCAAATTTCAACTTAAGAAGGTTCTTTGCATGGGGGTTGCCGTTGGGAATGTTGCCATGGAGGAGAAGCAAGTCTTCCAAAACGTGCAAATGAGCGTTAATTTCCTGGTTTCGTTGTTGAAAAAGAACTGGCAGAACGTGCCTGTATCTGAAGAGCACAATGGGGAAGTCATACAGGGACCAAAAATGTCAACCATGTCAACTGCAAAGCTTCCTTCCCGCACCATGTTCAACAGGTCGGCGCCGTGTAAAAACCAATTCAGAAGCAGCATTATTAAGTGTCCATCTTCGATCGGATCCACGAGCAACATATCAAAATCATTCGGCTTGAAATCATTGCACTCATCCAGAACCACAGCAATGGCAGTATACAAGATTAAACTTATCGAACCGTGTGGGAAAGAGCACGAGTTTGAGGCATCTGATGATACCTACATTCTTGATGCAGCTGAAGAAGCAGGAATTGACCTTCCATATTCTTGCAGGGCAGGGGCGTGTTCTACGTGCGCTGGGAAATTCGTTTCGGGTTCAGTCGATCAGTCGGACGGGTCGTTCCTGGACGATAGTCAAATGGAAGAGGGGTATTTGTTAACCTGTATTTCACACCCAACTTCAGACTGTGTGATTCTCACACACAAGGAAGGAGAACTGATCTGAGTATTATATCAGTGTTTTCTTTTTCTTTTATGAGTTTGTAGTTTTGATTTGTAATGTGAGATATTATATCAAATAAATAAAAAAAATAATAAAAAAAATGTAAAATAGTATATGTGAAAGTGATGGCTTAAAGTGACGTCGTTTATCTATTTTGTATTTTCTCTTCTTATGTTGCACGTAAAATTTTGTTGTATTATTGTACTAAATAAAAAACCTTCCTGAGTTTTTTATTTTTTA

Coding sequence (CDS)

ATGCTGTCAAAAGCGAATGAGTTCATCAGCCCCCATGACTTAAGTGTAGAGCATCTTTGCAAAGGCGAAGATTCGAATATGAGTAAGCTTCAGAGTGAGGCATTGAGAGAAGCTATCTCATCTATCTTCACTGATAGCAATGACAAAAAGAGAAATTTTACTGAGACCATTGAGCTTCAGATCGGGCTGAAGAACTATGACCCTCAAAAGGACAAGCGTTTCAGTGGTTCTGTGAAGTTGCCGCACATTCCCCGTCCCAAGATGAAGCTTTGCATGCTTGGAGATGCCTTGCACGTTGAGGAGGCCGAAAAGATTGGTCTAGACTATATGGATGTGGAAGGCTTGAAGAAGCTAAACAAGAACAAGAAATTGGTGAAGAAGCTTGCCAAGAAATACCATGCCTTTTTGGCATCTGAGGCTGTAATTAAGCAGATCCCACGTCTTCTGGGCCCTGGAAAGTTCCCAACATTGGTGACACACCAAGAATCGCTGGAATCGAAAGTTAACGAGACCAAGGCAATGGTCAAATTTCAACTTAAGAAGGTTCTTTGCATGGGGGTTGCCGTTGGGAATGTTGCCATGGAGGAGAAGCAAGTCTTCCAAAACGTGCAAATGAGCGTTAATTTCCTGGTTTCGTTGTTGAAAAAGAACTGGCAGAACGTGCCTGTATCTGAAGAGCACAATGGGGAAGTCATACAGGGACCAAAAATGTCAACCATGTCAACTGCAAAGCTTCCTTCCCGCACCATGTTCAACAGGTCGGCGCCGTGTAAAAACCAATTCAGAAGCAGCATTATTAAGTGTCCATCTTCGATCGGATCCACGAGCAACATATCAAAATCATTCGGCTTGAAATCATTGCACTCATCCAGAACCACAGCAATGGCAGTATACAAGATTAAACTTATCGAACCGTGTGGGAAAGAGCACGAGTTTGAGGCATCTGATGATACCTACATTCTTGATGCAGCTGAAGAAGCAGGAATTGACCTTCCATATTCTTGCAGGGCAGGGGCGTGTTCTACGTGCGCTGGGAAATTCGTTTCGGGTTCAGTCGATCAGTCGGACGGGTCGTTCCTGGACGATAGTCAAATGGAAGAGGGGTATTTGTTAACCTGTATTTCACACCCAACTTCAGACTGTGTGATTCTCACACACAAGGAAGGAGAACTGATCTGA

Protein sequence

MLSKANEFISPHDLSVEHLCKGEDSNMSKLQSEALREAISSIFTDSNDKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKLCMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQNVQMSVNFLVSLLKKNWQNVPVSEEHNGEVIQGPKMSTMSTAKLPSRTMFNRSAPCKNQFRSSIIKCPSSIGSTSNISKSFGLKSLHSSRTTAMAVYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSDGSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI

Homology

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BLAST of CmaCh18G006570 vs. Swiss-Prot
Match: R10A_ORYSI (60S ribosomal protein L10a OS=Oryza sativa subsp. indica GN=RPL10A PE=3 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 6.0e-91
Identity = 172/200 (86.00%), Postives = 184/200 (92.00%), Query Frame = 1


Query: 27  MSKLQSEALREAISSIFTDSNDKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 86
           MSKLQSE L+EAIS +  +S +K R FTET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 87  KMKLCMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 146
           KMK+CMLGDA HVEEAEKIGLDYMDVE LKK+NKNKKLVKKLAKKYHAFLASEA+IKQIP
Sbjct: 61  KMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIP 120

Query: 147 RLLGP-----GKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQ 206
           RLLGP     GKFPTLVTHQESLESKVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+ Q
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQQ 180

Query: 207 NVQMSVNFLVSLLKKNWQNV 222
           N+QMSVNFLVSLLKKNWQNV
Sbjct: 181 NIQMSVNFLVSLLKKNWQNV 200

[Close]

BLAST of CmaCh18G006570 vs. Swiss-Prot
Match: R10A_ORYSJ (60S ribosomal protein L10a OS=Oryza sativa subsp. japonica GN=RPL10A PE=1 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 6.0e-91
Identity = 172/200 (86.00%), Postives = 184/200 (92.00%), Query Frame = 1


Query: 27  MSKLQSEALREAISSIFTDSNDKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 86
           MSKLQSE L+EAIS +  +S +K R FTET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 87  KMKLCMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 146
           KMK+CMLGDA HVEEAEKIGLDYMDVE LKK+NKNKKLVKKLAKKYHAFLASEA+IKQIP
Sbjct: 61  KMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIP 120

Query: 147 RLLGP-----GKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQ 206
           RLLGP     GKFPTLVTHQESLESKVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+ Q
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQQ 180

Query: 207 NVQMSVNFLVSLLKKNWQNV 222
           N+QMSVNFLVSLLKKNWQNV
Sbjct: 181 NIQMSVNFLVSLLKKNWQNV 200

[Close]

BLAST of CmaCh18G006570 vs. Swiss-Prot
Match: R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=1 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 2.3e-90
Identity = 174/200 (87.00%), Postives = 185/200 (92.50%), Query Frame = 1


Query: 27  MSKLQSEALREAISSIFTDSNDKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 86
           MSKLQSEA+REAI++I   S  KKRNF ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 87  KMKLCMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 146
           KMK+CMLGDA HVEEAEK+GL+ MDVE LKKLNKNKKLVKKLAKKYHAFLASE+VIKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIP 120

Query: 147 RLLGP-----GKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQ 206
           RLLGP     GKFPTLV+HQESLESKVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+FQ
Sbjct: 121 RLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQ 180

Query: 207 NVQMSVNFLVSLLKKNWQNV 222
           NVQMSVNFLVSLLKKNWQNV
Sbjct: 181 NVQMSVNFLVSLLKKNWQNV 200

[Close]

BLAST of CmaCh18G006570 vs. Swiss-Prot
Match: R10A3_ARATH (60S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=1 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 3.0e-90
Identity = 175/201 (87.06%), Postives = 186/201 (92.54%), Query Frame = 1


Query: 27  MSKLQSEALREAISSIFTDSNDKK-RNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 86
           MSKLQSEA+REAISSI T   + K RNFTETIELQIGLKNYDPQKDKRFSGSVKLPH+PR
Sbjct: 1   MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPR 60

Query: 87  PKMKLCMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQI 146
           PKMK+CMLGDA HVEEAEKIGL+ MDVE LKKLNKNKKLVKKLAKK+HAFLASE+VIKQI
Sbjct: 61  PKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQI 120

Query: 147 PRLLGP-----GKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVF 206
           PRLLGP     GKFPTLV+HQESLESKVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+F
Sbjct: 121 PRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIF 180

Query: 207 QNVQMSVNFLVSLLKKNWQNV 222
           QNVQMSVNFLVSLLKKNWQNV
Sbjct: 181 QNVQMSVNFLVSLLKKNWQNV 201

[Close]

BLAST of CmaCh18G006570 vs. Swiss-Prot
Match: R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=1 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 3.3e-89
Identity = 171/200 (85.50%), Postives = 184/200 (92.00%), Query Frame = 1


Query: 27  MSKLQSEALREAISSIFTDSNDKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 86
           MSKLQSEA+REAI++I   S +KKRNF ET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 87  KMKLCMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 146
           KMK+CMLGDA HVEEAEK+GL  MDVE LKKLNKNKKLVKKLAK YHAFLASE+VIKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIP 120

Query: 147 RLLGP-----GKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQ 206
           RLLGP     GKFPTLV+HQESLE+KVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+FQ
Sbjct: 121 RLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQ 180

Query: 207 NVQMSVNFLVSLLKKNWQNV 222
           NVQMSVNFLVSLLKKNWQNV
Sbjct: 181 NVQMSVNFLVSLLKKNWQNV 200

[Close]

BLAST of CmaCh18G006570 vs. TrEMBL
Match: A0A0A0KEW8_CUCSA (Ribosomal protein OS=Cucumis sativus GN=Csa_6G152330 PE=3 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 5.6e-96
Identity = 186/200 (93.00%), Postives = 191/200 (95.50%), Query Frame = 1


Query: 27  MSKLQSEALREAISSIFTDSNDKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 86
           MSKLQS+ALREAISSIF DS +KKR FTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 87  KMKLCMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 146
           KMK+CMLGDA HVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEA+IKQIP
Sbjct: 61  KMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIP 120

Query: 147 RLLGP-----GKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQ 206
           RLLGP     GKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGN+AMEEKQVFQ
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNIAMEEKQVFQ 180

Query: 207 NVQMSVNFLVSLLKKNWQNV 222
           NVQMSVNFLVSLLKKNWQNV
Sbjct: 181 NVQMSVNFLVSLLKKNWQNV 200

[Close]

BLAST of CmaCh18G006570 vs. TrEMBL
Match: I1MZ14_SOYBN (Ribosomal protein OS=Glycine max GN=GLYMA_18G026100 PE=3 SV=2)

HSP 1 Score: 358.2 bits (918), Expect = 1.3e-95
Identity = 184/211 (87.20%), Postives = 196/211 (92.89%), Query Frame = 1


Query: 27  MSKLQSEALREAISSIFTDSNDKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 86
           MSKLQS+ALREAIS I  DS +K R F ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISGIMADSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 87  KMKLCMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 146
           KMK+CMLGDA HVEEAEKIGLD+MDVE LKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKIGLDWMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 120

Query: 147 RLLGP-----GKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQ 206
           RLLGP     GKFPTLVTHQE+LESKVNE+KAMVKFQLKKVLCMGVAVGNV+MEEKQ+FQ
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNESKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQ 180

Query: 207 NVQMSVNFLVSLLKKNWQNVPVSEEHNGEVI 233
           NVQ+SVNFLVSLLKKNWQNV VSEE+NGE++
Sbjct: 181 NVQLSVNFLVSLLKKNWQNVLVSEEYNGEIL 211

[Close]

BLAST of CmaCh18G006570 vs. TrEMBL
Match: A0A0A0LVE6_CUCSA (Ribosomal protein OS=Cucumis sativus GN=Csa_1G163140 PE=3 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 2.1e-95
Identity = 183/200 (91.50%), Postives = 193/200 (96.50%), Query Frame = 1


Query: 27  MSKLQSEALREAISSIFTDSNDKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 86
           MSKLQS+ALREAISSIFTDSN+KKR FTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 87  KMKLCMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 146
           KMK+CMLGDA H+EEAEKIGL+YMDVEGLKKLNKNKKLVKKLAKKYHAFLASE++IKQIP
Sbjct: 61  KMKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIP 120

Query: 147 RLLGP-----GKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQ 206
           RLLGP     GKFPTLVTHQE+LESKVNETKAMVKFQLKKVLCMGVAVGNV+M+EKQVFQ
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQVFQ 180

Query: 207 NVQMSVNFLVSLLKKNWQNV 222
           NVQMSVNFLVSLLKKNWQNV
Sbjct: 181 NVQMSVNFLVSLLKKNWQNV 200

[Close]

BLAST of CmaCh18G006570 vs. TrEMBL
Match: A0A059ABT7_EUCGR (Ribosomal protein OS=Eucalyptus grandis GN=EUGRSUZ_J00492 PE=3 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 2.8e-95
Identity = 185/219 (84.47%), Postives = 200/219 (91.32%), Query Frame = 1


Query: 22  GEDSNMSKLQSEALREAISSIFTDSNDKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLP 81
           G+D  MSKLQSEALREAI+ I  D N+KKRNFTETIELQIGLKNYDPQKDKRFSGSVKLP
Sbjct: 36  GKDEKMSKLQSEALREAITGIKNDCNEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLP 95

Query: 82  HIPRPKMKLCMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAV 141
           HIPRPKMK+CMLGDA HVEEAEKIGLDYMDVEGLKKLNKNKKLVK+LAKKYHAFLASEAV
Sbjct: 96  HIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKRLAKKYHAFLASEAV 155

Query: 142 IKQIPRLLGP-----GKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEE 201
           IKQIPRLLGP     GKFPTLVTHQESL++KVNE KAMVKFQLKKVLCMGVAVGN++ME+
Sbjct: 156 IKQIPRLLGPGLNKAGKFPTLVTHQESLDAKVNEMKAMVKFQLKKVLCMGVAVGNLSMED 215

Query: 202 KQVFQNVQMSVNFLVSLLKKNWQN---VPVSEEHNGEVI 233
           KQ+FQNVQ+SVNFLVSLLKKNWQN   VP+ EE +GE +
Sbjct: 216 KQIFQNVQLSVNFLVSLLKKNWQNVSQVPLLEELHGEAV 254

[Close]

BLAST of CmaCh18G006570 vs. TrEMBL
Match: A0A067EVW9_CITSI (Ribosomal protein OS=Citrus sinensis GN=CISIN_1g027063mg PE=3 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 4.8e-95
Identity = 186/209 (89.00%), Postives = 197/209 (94.26%), Query Frame = 1


Query: 27  MSKLQSEALREAISSIFTDSND-KKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 86
           MSKLQS+ALREA+SSI   S + KKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR
Sbjct: 1   MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 60

Query: 87  PKMKLCMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQI 146
           PKMK+CMLGDA HVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASE+VIKQI
Sbjct: 61  PKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQI 120

Query: 147 PRLLGP-----GKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVF 206
           PRLLGP     GKFPTLVTHQESLESKVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+F
Sbjct: 121 PRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIF 180

Query: 207 QNVQMSVNFLVSLLKKNWQNVPVSEEHNG 230
           QNVQMSVNFLVSLLKKNWQNVP+SEE++G
Sbjct: 181 QNVQMSVNFLVSLLKKNWQNVPLSEEYHG 209

[Close]

BLAST of CmaCh18G006570 vs. TAIR10
Match: AT1G08360.1 (AT1G08360.1 Ribosomal protein L1p/L10e family)

HSP 1 Score: 334.0 bits (855), Expect = 1.3e-91
Identity = 174/200 (87.00%), Postives = 185/200 (92.50%), Query Frame = 1


Query: 27  MSKLQSEALREAISSIFTDSNDKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 86
           MSKLQSEA+REAI++I   S  KKRNF ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 87  KMKLCMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 146
           KMK+CMLGDA HVEEAEK+GL+ MDVE LKKLNKNKKLVKKLAKKYHAFLASE+VIKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIP 120

Query: 147 RLLGP-----GKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQ 206
           RLLGP     GKFPTLV+HQESLESKVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+FQ
Sbjct: 121 RLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQ 180

Query: 207 NVQMSVNFLVSLLKKNWQNV 222
           NVQMSVNFLVSLLKKNWQNV
Sbjct: 181 NVQMSVNFLVSLLKKNWQNV 200

[Close]

BLAST of CmaCh18G006570 vs. TAIR10
Match: AT5G22440.1 (AT5G22440.1 Ribosomal protein L1p/L10e family)

HSP 1 Score: 333.6 bits (854), Expect = 1.7e-91
Identity = 175/201 (87.06%), Postives = 186/201 (92.54%), Query Frame = 1


Query: 27  MSKLQSEALREAISSIFTDSNDKK-RNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 86
           MSKLQSEA+REAISSI T   + K RNFTETIELQIGLKNYDPQKDKRFSGSVKLPH+PR
Sbjct: 1   MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPR 60

Query: 87  PKMKLCMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQI 146
           PKMK+CMLGDA HVEEAEKIGL+ MDVE LKKLNKNKKLVKKLAKK+HAFLASE+VIKQI
Sbjct: 61  PKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQI 120

Query: 147 PRLLGP-----GKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVF 206
           PRLLGP     GKFPTLV+HQESLESKVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+F
Sbjct: 121 PRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIF 180

Query: 207 QNVQMSVNFLVSLLKKNWQNV 222
           QNVQMSVNFLVSLLKKNWQNV
Sbjct: 181 QNVQMSVNFLVSLLKKNWQNV 201

[Close]

BLAST of CmaCh18G006570 vs. TAIR10
Match: AT2G27530.1 (AT2G27530.1 Ribosomal protein L1p/L10e family)

HSP 1 Score: 330.1 bits (845), Expect = 1.9e-90
Identity = 171/200 (85.50%), Postives = 184/200 (92.00%), Query Frame = 1


Query: 27  MSKLQSEALREAISSIFTDSNDKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 86
           MSKLQSEA+REAI++I   S +KKRNF ET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 87  KMKLCMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 146
           KMK+CMLGDA HVEEAEK+GL  MDVE LKKLNKNKKLVKKLAK YHAFLASE+VIKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIP 120

Query: 147 RLLGP-----GKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQ 206
           RLLGP     GKFPTLV+HQESLE+KVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+FQ
Sbjct: 121 RLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQ 180

Query: 207 NVQMSVNFLVSLLKKNWQNV 222
           NVQMSVNFLVSLLKKNWQNV
Sbjct: 181 NVQMSVNFLVSLLKKNWQNV 200

[Close]

BLAST of CmaCh18G006570 vs. TAIR10
Match: AT2G27510.1 (AT2G27510.1 ferredoxin 3)

HSP 1 Score: 178.3 bits (451), Expect = 9.0e-45
Identity = 93/156 (59.62%), Postives = 118/156 (75.64%), Query Frame = 1


Query: 240 MSTAKLPSRTMFNRSAPCKNQFRSSIIKCPS---SIGSTSNISKSFGLK-SLHSSRTTAM 299
           M+T ++ S +M    A  ++Q  + +I   S   S+GST  +S+SFGLK S +S   T  
Sbjct: 1   MATVRISSTSM--TKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMS 60

Query: 300 AVYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQS 359
           AVYK+KL+ P G+E EFE  DD YILDAAEEAG+DLPYSCRAGACSTCAG+ VSG+VDQS
Sbjct: 61  AVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQS 120

Query: 360 DGSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGEL 392
           DGSFL+DS +E+GY+LTC+++P SDCVI THKE EL
Sbjct: 121 DGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154

[Close]

BLAST of CmaCh18G006570 vs. TAIR10
Match: AT1G10960.1 (AT1G10960.1 ferredoxin 1)

HSP 1 Score: 153.3 bits (386), Expect = 3.1e-37
Identity = 76/115 (66.09%), Postives = 88/115 (76.52%), Query Frame = 1


Query: 276 SNISKSFGLKS--LHSSRTTAMAVYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPY 335
           +N    FGLKS      R TAMA YK+K I P G E E E  +D Y+LDAAEEAG+DLPY
Sbjct: 31  ANTQSLFGLKSSTARGGRVTAMATYKVKFITPEG-EQEVECEEDVYVLDAAEEAGLDLPY 90

Query: 336 SCRAGACSTCAGKFVSGSVDQSDGSFLDDSQMEEGYLLTCISHPTSDCVILTHKE 389
           SCRAG+CS+CAGK VSGS+DQSD SFLDD QM EGY+LTC+++PTSD VI THKE
Sbjct: 91  SCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKE 144

[Close]

BLAST of CmaCh18G006570 vs. NCBI nr
Match: gi|659117410|ref|XP_008458587.1| (PREDICTED: 60S ribosomal protein L10a-1-like [Cucumis melo])

HSP 1 Score: 359.4 bits (921), Expect = 8.1e-96
Identity = 186/200 (93.00%), Postives = 191/200 (95.50%), Query Frame = 1


Query: 27  MSKLQSEALREAISSIFTDSNDKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 86
           MSKLQS+ALREAISSIF DS +KKR FTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 87  KMKLCMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 146
           KMK+CMLGDA HVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEA+IKQIP
Sbjct: 61  KMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIP 120

Query: 147 RLLGP-----GKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQ 206
           RLLGP     GKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGN+AMEEKQVFQ
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNIAMEEKQVFQ 180

Query: 207 NVQMSVNFLVSLLKKNWQNV 222
           NVQMSVNFLVSLLKKNWQNV
Sbjct: 181 NVQMSVNFLVSLLKKNWQNV 200

[Close]

BLAST of CmaCh18G006570 vs. NCBI nr
Match: gi|947048184|gb|KRG97712.1| (hypothetical protein GLYMA_18G026100 [Glycine max])

HSP 1 Score: 358.2 bits (918), Expect = 1.8e-95
Identity = 184/211 (87.20%), Postives = 196/211 (92.89%), Query Frame = 1


Query: 27  MSKLQSEALREAISSIFTDSNDKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 86
           MSKLQS+ALREAIS I  DS +K R F ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISGIMADSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 87  KMKLCMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 146
           KMK+CMLGDA HVEEAEKIGLD+MDVE LKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKIGLDWMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 120

Query: 147 RLLGP-----GKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQ 206
           RLLGP     GKFPTLVTHQE+LESKVNE+KAMVKFQLKKVLCMGVAVGNV+MEEKQ+FQ
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNESKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQ 180

Query: 207 NVQMSVNFLVSLLKKNWQNVPVSEEHNGEVI 233
           NVQ+SVNFLVSLLKKNWQNV VSEE+NGE++
Sbjct: 181 NVQLSVNFLVSLLKKNWQNVLVSEEYNGEIL 211

[Close]

BLAST of CmaCh18G006570 vs. NCBI nr
Match: gi|449443440|ref|XP_004139485.1| (PREDICTED: 60S ribosomal protein L10a-1 [Cucumis sativus])

HSP 1 Score: 357.5 bits (916), Expect = 3.1e-95
Identity = 183/200 (91.50%), Postives = 193/200 (96.50%), Query Frame = 1


Query: 27  MSKLQSEALREAISSIFTDSNDKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 86
           MSKLQS+ALREAISSIFTDSN+KKR FTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 87  KMKLCMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 146
           KMK+CMLGDA H+EEAEKIGL+YMDVEGLKKLNKNKKLVKKLAKKYHAFLASE++IKQIP
Sbjct: 61  KMKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIP 120

Query: 147 RLLGP-----GKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQ 206
           RLLGP     GKFPTLVTHQE+LESKVNETKAMVKFQLKKVLCMGVAVGNV+M+EKQVFQ
Sbjct: 121 RLLGPGLNKAGKFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQVFQ 180

Query: 207 NVQMSVNFLVSLLKKNWQNV 222
           NVQMSVNFLVSLLKKNWQNV
Sbjct: 181 NVQMSVNFLVSLLKKNWQNV 200

[Close]

BLAST of CmaCh18G006570 vs. NCBI nr
Match: gi|629084478|gb|KCW50835.1| (hypothetical protein EUGRSUZ_J00492 [Eucalyptus grandis])

HSP 1 Score: 357.1 bits (915), Expect = 4.0e-95
Identity = 185/219 (84.47%), Postives = 200/219 (91.32%), Query Frame = 1


Query: 22  GEDSNMSKLQSEALREAISSIFTDSNDKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLP 81
           G+D  MSKLQSEALREAI+ I  D N+KKRNFTETIELQIGLKNYDPQKDKRFSGSVKLP
Sbjct: 36  GKDEKMSKLQSEALREAITGIKNDCNEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLP 95

Query: 82  HIPRPKMKLCMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAV 141
           HIPRPKMK+CMLGDA HVEEAEKIGLDYMDVEGLKKLNKNKKLVK+LAKKYHAFLASEAV
Sbjct: 96  HIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKRLAKKYHAFLASEAV 155

Query: 142 IKQIPRLLGP-----GKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEE 201
           IKQIPRLLGP     GKFPTLVTHQESL++KVNE KAMVKFQLKKVLCMGVAVGN++ME+
Sbjct: 156 IKQIPRLLGPGLNKAGKFPTLVTHQESLDAKVNEMKAMVKFQLKKVLCMGVAVGNLSMED 215

Query: 202 KQVFQNVQMSVNFLVSLLKKNWQN---VPVSEEHNGEVI 233
           KQ+FQNVQ+SVNFLVSLLKKNWQN   VP+ EE +GE +
Sbjct: 216 KQIFQNVQLSVNFLVSLLKKNWQNVSQVPLLEELHGEAV 254

[Close]

BLAST of CmaCh18G006570 vs. NCBI nr
Match: gi|641839146|gb|KDO58080.1| (hypothetical protein CISIN_1g027063mg [Citrus sinensis])

HSP 1 Score: 356.3 bits (913), Expect = 6.9e-95
Identity = 186/209 (89.00%), Postives = 197/209 (94.26%), Query Frame = 1


Query: 27  MSKLQSEALREAISSIFTDSND-KKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 86
           MSKLQS+ALREA+SSI   S + KKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR
Sbjct: 1   MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 60

Query: 87  PKMKLCMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQI 146
           PKMK+CMLGDA HVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASE+VIKQI
Sbjct: 61  PKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQI 120

Query: 147 PRLLGP-----GKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVF 206
           PRLLGP     GKFPTLVTHQESLESKVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+F
Sbjct: 121 PRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIF 180

Query: 207 QNVQMSVNFLVSLLKKNWQNVPVSEEHNG 230
           QNVQMSVNFLVSLLKKNWQNVP+SEE++G
Sbjct: 181 QNVQMSVNFLVSLLKKNWQNVPLSEEYHG 209

The following BLAST results are available for this feature:

BLAST of CmaCh18G006570 vs. Swiss-Prot


Match Name	E-value	Identity	Description
R10A_ORYSI	6.0e-91	86.00	60S ribosomal protein L10a OS=Oryza sativa subsp. indica GN=RPL10A PE=3 SV=1	[more]
R10A_ORYSJ	6.0e-91	86.00	60S ribosomal protein L10a OS=Oryza sativa subsp. japonica GN=RPL10A PE=1 SV=1	[more]
R10A1_ARATH	2.3e-90	87.00	60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=1 SV=1	[more]
R10A3_ARATH	3.0e-90	87.06	60S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=1 SV=1	[more]
R10A2_ARATH	3.3e-89	85.50	60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=1 SV=1	[more]

BLAST of CmaCh18G006570 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEW8_CUCSA	5.6e-96	93.00	Ribosomal protein OS=Cucumis sativus GN=Csa_6G152330 PE=3 SV=1	[more]
I1MZ14_SOYBN	1.3e-95	87.20	Ribosomal protein OS=Glycine max GN=GLYMA_18G026100 PE=3 SV=2	[more]
A0A0A0LVE6_CUCSA	2.1e-95	91.50	Ribosomal protein OS=Cucumis sativus GN=Csa_1G163140 PE=3 SV=1	[more]
A0A059ABT7_EUCGR	2.8e-95	84.47	Ribosomal protein OS=Eucalyptus grandis GN=EUGRSUZ_J00492 PE=3 SV=1	[more]
A0A067EVW9_CITSI	4.8e-95	89.00	Ribosomal protein OS=Citrus sinensis GN=CISIN_1g027063mg PE=3 SV=1	[more]

BLAST of CmaCh18G006570 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08360.1	1.3e-91	87.00	Ribosomal protein L1p/L10e family	[more]
AT5G22440.1	1.7e-91	87.06	Ribosomal protein L1p/L10e family	[more]
AT2G27530.1	1.9e-90	85.50	Ribosomal protein L1p/L10e family	[more]
AT2G27510.1	9.0e-45	59.62	ferredoxin 3	[more]
AT1G10960.1	3.1e-37	66.09	ferredoxin 1	[more]

BLAST of CmaCh18G006570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659117410\|ref\|XP_008458587.1\|	8.1e-96	93.00	PREDICTED: 60S ribosomal protein L10a-1-like [Cucumis melo]	[more]
gi\|947048184\|gb\|KRG97712.1\|	1.8e-95	87.20	hypothetical protein GLYMA_18G026100 [Glycine max]	[more]
gi\|449443440\|ref\|XP_004139485.1\|	3.1e-95	91.50	PREDICTED: 60S ribosomal protein L10a-1 [Cucumis sativus]	[more]
gi\|629084478\|gb\|KCW50835.1\|	4.0e-95	84.47	hypothetical protein EUGRSUZ_J00492 [Eucalyptus grandis]	[more]
gi\|641839146\|gb\|KDO58080.1\|	6.9e-95	89.00	hypothetical protein CISIN_1g027063mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001041	2Fe-2S_ferredoxin-type
IPR006058	2Fe2S_fd_BS
IPR010241	Fd_pln
IPR012675	Beta-grasp_dom_sf
IPR016094	Ribosomal protein L1, 2-layer alpha/beta-sandwich
IPR016095	Ribosomal_L1_3-a/b-sand
IPR023674	Ribosomal_L1-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0009055	electron carrier activity
GO:0051536	iron-sulfur cluster binding
GO:0051537	2 iron, 2 sulfur cluster binding
GO:0003723	RNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0022900	electron transport chain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0000470	maturation of LSU-rRNA
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0051536	iron-sulfur cluster binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G006570.1	CmaCh18G006570.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 303..378 score: 3.6
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROFILE	PS51085	2FE2S_FER_2	coord: 298..389 score: 12
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	unknown	SSF54292	2Fe-2S ferredoxin-like	coord: 289..389 score: 2.23
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 335..343 scor
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAMs	TIGR02008	TIGR02008	coord: 296..391 score: 3.1
IPR012675	Beta-grasp domain	GENE3D	G3DSA:3.10.20.30		coord: 285..391 score: 1.2
IPR016094	Ribosomal protein L1, 2-layer alpha/beta-sandwich	GENE3D	G3DSA:3.30.190.20		coord: 173..221 score: 1.3E-38coord: 32..86 score: 1.3
IPR016095	Ribosomal protein L1, 3-layer alpha/beta-sandwich	GENE3D	G3DSA:3.40.50.790		coord: 88..172 score: 4.6
IPR023674	Ribosomal protein L1-like	unknown	SSF56808	Ribosomal protein L1	coord: 48..221 score: 3.4
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 23..270 score: 2.3E
None	No IPR available	PANTHER	PTHR23105:SF55	SUBFAMILY NOT NAMED	coord: 23..270 score: 2.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh18G006570	Cla001097	Watermelon (97103) v1	cmawmB383
CmaCh18G006570	Csa1G163140	Cucumber (Chinese Long) v2	cmacuB399
CmaCh18G006570	MELO3C004713	Melon (DHL92) v3.5.1	cmameB368
CmaCh18G006570	ClCG01G012230	Watermelon (Charleston Gray)	cmawcgB341
CmaCh18G006570	CSPI01G14690	Wild cucumber (PI 183967)	cmacpiB403
CmaCh18G006570	CmoCh18G006640	Cucurbita moschata (Rifu)	cmacmoB410
CmaCh18G006570	Lsi03G001200	Bottle gourd (USVL1VR-Ls)	cmalsiB378
CmaCh18G006570	Cp4.1LG09g05610	Cucurbita pepo (Zucchini)	cmacpeB415
CmaCh18G006570	MELO3C004713.2	Melon (DHL92) v3.6.1	cmamedB425
CmaCh18G006570	CsaV3_1G014820	Cucumber (Chinese Long) v3	cmacucB0476
CmaCh18G006570	Cla97C01G011570	Watermelon (97103) v2	cmawmbB394
CmaCh18G006570	Bhi08G000048	Wax gourd	cmawgoB0525
CmaCh18G006570	CsGy1G014580	Cucumber (Gy14) v2	cgybcmaB095
CmaCh18G006570	Carg26273	Silver-seed gourd	carcmaB0000

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh18G006570	CmaCh13G003060	Cucurbita maxima (Rimu)	cmacmaB214

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh18G006570	Watermelon (97103) v2	cmawmbB412
CmaCh18G006570	Watermelon (97103) v1	cmawmB384