Cla001097 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla001097
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Ferredoxin (AHRD V1 ***- Q9AUE1_IMPBA); contains Interpro domain(s) IPR010241 Ferredoxin [2Fe-2S], plant
Location	Chr1 : 13593797 .. 13594261 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAACCATGTCAACTGCAAAGCTCCCTACCCGCTGCATGTACAACGCGCCGTGTAAAAATCAACTCAGAAGTGCCATAATCAAGTGTCCATGGTCAATTGGATCTACGAGCAACATTTCAAAATCATTTGGCTTGAAATCATGTCCCTCATTCAGAGCCTGTGCAATGGCAGTTTACAAGATTAAACTGGTTGAACCATGTGGGAAAGAGCATGAGTTTGAGGCATCTGATGATACTTACATTCTTGATGCAGCTGAAGAAGCAGGAGTTGACTTACCTTATTCTTGCAGGGCAGGCGCGTGTTCTACGTGCGCCGGGAAAATGGTTTCGGGTTCAGTTGATCAGTCGGACGGGTCGTTCCTTGATGATAGTCAAATGGCAGAGGGTTATTTGTTAACCTGCGTTTCATTACCAACGGCGGACTGTGTGATTCACACACATAAGGAAGGAGAACTGATCTGA

mRNA sequence

ATGTCAACCATGTCAACTGCAAAGCTCCCTACCCGCTGCATGTACAACGCGCCGTGTAAAAATCAACTCAGAAGTGCCATAATCAAGTGTCCATGGTCAATTGGATCTACGAGCAACATTTCAAAATCATTTGGCTTGAAATCATGTCCCTCATTCAGAGCCTGTGCAATGGCAGTTTACAAGATTAAACTGGTTGAACCATGTGGGAAAGAGCATGAGTTTGAGGCATCTGATGATACTTACATTCTTGATGCAGCTGAAGAAGCAGGAGTTGACTTACCTTATTCTTGCAGGGCAGGCGCGTGTTCTACGTGCGCCGGGAAAATGGTTTCGGGTTCAGTTGATCAGTCGGACGGGTCGTTCCTTGATGATAGTCAAATGGCAGAGGGTTATTTGTTAACCTGCGTTTCATTACCAACGGCGGACTGTGTGATTCACACACATAAGGAAGGAGAACTGATCTGA

Coding sequence (CDS)

ATGTCAACCATGTCAACTGCAAAGCTCCCTACCCGCTGCATGTACAACGCGCCGTGTAAAAATCAACTCAGAAGTGCCATAATCAAGTGTCCATGGTCAATTGGATCTACGAGCAACATTTCAAAATCATTTGGCTTGAAATCATGTCCCTCATTCAGAGCCTGTGCAATGGCAGTTTACAAGATTAAACTGGTTGAACCATGTGGGAAAGAGCATGAGTTTGAGGCATCTGATGATACTTACATTCTTGATGCAGCTGAAGAAGCAGGAGTTGACTTACCTTATTCTTGCAGGGCAGGCGCGTGTTCTACGTGCGCCGGGAAAATGGTTTCGGGTTCAGTTGATCAGTCGGACGGGTCGTTCCTTGATGATAGTCAAATGGCAGAGGGTTATTTGTTAACCTGCGTTTCATTACCAACGGCGGACTGTGTGATTCACACACATAAGGAAGGAGAACTGATCTGA

Protein sequence

MSTMSTAKLPTRCMYNAPCKNQLRSAIIKCPWSIGSTSNISKSFGLKSCPSFRACAMAVYKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDGSFLDDSQMAEGYLLTCVSLPTADCVIHTHKEGELI

Homology

[Close]

BLAST of Cla001097 vs. Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 4.4e-45
Identity = 92/151 (60.93%), Postives = 105/151 (69.54%), Query Frame = 1


Query: 4   MSTAKLPTRCMYNAPCKN-QLRSAIIKCPWSIGSTSNISKSFGLKSCPSFRACAMAVYKI 63
           MST+   T C      +  Q     +K P S+   S ++K   LK+       AMAVYK+
Sbjct: 1   MSTSTFATSCTLLGNVRTTQASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVSAMAVYKV 60

Query: 64  KLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDGSFL 123
           KLV P G+EHEF+A DD YILDAAE AGV+LPYSCRAGACSTCAGK+ SGSVDQSDGSFL
Sbjct: 61  KLVGPEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFL 120

Query: 124 DDSQMAEGYLLTCVSLPTADCVIHTHKEGEL 154
           DD Q  EGY+LTCVS P +DCVIHTHKEG+L
Sbjct: 121 DDGQQEEGYVLTCVSYPKSDCVIHTHKEGDL 151

[Close]

BLAST of Cla001097 vs. Swiss-Prot
Match: FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-44
Identity = 92/154 (59.74%), Postives = 113/154 (73.38%), Query Frame = 1


Query: 4   MSTAKLPTRCMYNAPCKNQLRSAII---KCPWSIGSTSNISKSFGLK-SCPSFRACAMAV 63
           M+T ++ +  M  A  ++Q  + +I       S+GST  +S+SFGLK S  S  A   AV
Sbjct: 1   MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAV 60

Query: 64  YKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDG 123
           YK+KL+ P G+E EFE  DD YILDAAEEAGVDLPYSCRAGACSTCAG++VSG+VDQSDG
Sbjct: 61  YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG 120

Query: 124 SFLDDSQMAEGYLLTCVSLPTADCVIHTHKEGEL 154
           SFL+DS + +GY+LTCV+ P +DCVIHTHKE EL
Sbjct: 121 SFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154

[Close]

BLAST of Cla001097 vs. Swiss-Prot
Match: FER6_MAIZE (Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.6e-39
Identity = 90/162 (55.56%), Postives = 107/162 (66.05%), Query Frame = 1


Query: 1   MSTMSTAKLP---TRCMYN-----APCKNQLRSAIIKCPWSIGSTSNISKSFGLKSCPSF 60
           MST +  +LP   +   Y+     AP  N L  A        G     +++ G +    F
Sbjct: 1   MSTATAPRLPAPRSGASYHYQTTAAPAANTLSFA--------GHARQAARASGPRLSSRF 60

Query: 61  RACAMAV-YKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVS 120
            A A AV +K+KLV P G EHEFEA DDTYIL+AAE AGV+LP+SCRAG+CSTCAG+M +
Sbjct: 61  VASAAAVLHKVKLVGPDGTEHEFEAPDDTYILEAAETAGVELPFSCRAGSCSTCAGRMSA 120

Query: 121 GSVDQSDGSFLDDSQMAEGYLLTCVSLPTADCVIHTHKEGEL 154
           G VDQS+GSFLDD QMAEGYLLTC+S P ADCVIHTHKE +L
Sbjct: 121 GEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKEEDL 154

[Close]

BLAST of Cla001097 vs. Swiss-Prot
Match: FER2_RAPSA (Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.4e-35
Identity = 68/96 (70.83%), Postives = 80/96 (83.33%), Query Frame = 1


Query: 58  AVYKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQS 117
           AVYK+KL+ P G+E+EFE  DD +ILDAAEEAGVDLPYSCRAGACSTCAG++V G VDQS
Sbjct: 2   AVYKVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQS 61

Query: 118 DGSFLDDSQMAEGYLLTCVSLPTADCVIHTHKEGEL 154
           +GSFL+D    +G++LTCV+ P +DCVIHTHKE EL
Sbjct: 62  EGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETEL 97

[Close]

BLAST of Cla001097 vs. Swiss-Prot
Match: FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.8e-35
Identity = 74/115 (64.35%), Postives = 87/115 (75.65%), Query Frame = 1


Query: 38  SNISKSFGLKSCPSF--RACAMAVYKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPY 97
           +N    FGLKS  +   R  AMA YK+K + P G E E E  +D Y+LDAAEEAG+DLPY
Sbjct: 31  ANTQSLFGLKSSTARGGRVTAMATYKVKFITPEG-EQEVECEEDVYVLDAAEEAGLDLPY 90

Query: 98  SCRAGACSTCAGKMVSGSVDQSDGSFLDDSQMAEGYLLTCVSLPTADCVIHTHKE 151
           SCRAG+CS+CAGK+VSGS+DQSD SFLDD QM+EGY+LTCV+ PT+D VI THKE
Sbjct: 91  SCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKE 144

[Close]

BLAST of Cla001097 vs. TrEMBL
Match: A0A0A0LY90_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G163160 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 2.5e-71
Identity = 135/154 (87.66%), Postives = 139/154 (90.26%), Query Frame = 1


Query: 1   MSTMSTAKLPTRCMYNAPCKNQLRSAIIKCPWSIGSTSNISKSFGLKSCPSFRACAMAVY 60
           MSTMSTAKLPT  MYN   KNQL S IIKCP SIGST NI KSFGL S PSFRACAMA +
Sbjct: 1   MSTMSTAKLPTHFMYNTQSKNQLGSTIIKCPSSIGSTRNILKSFGLNSRPSFRACAMAAF 60

Query: 61  KIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDGS 120
           KIKLVEPCGKEHEFEASDDTYILDAAEEAG+DLPYSCRAGACSTCAGK+VSGSVDQSDGS
Sbjct: 61  KIKLVEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKIVSGSVDQSDGS 120

Query: 121 FLDDSQMAEGYLLTCVSLPTADCVIHTHKEGELI 155
           FLDD QMA GYLLTC+SLPTADCVIHTHKEGELI
Sbjct: 121 FLDDDQMANGYLLTCISLPTADCVIHTHKEGELI 154

[Close]

BLAST of Cla001097 vs. TrEMBL
Match: F6HHG1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0080g00410 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.6e-57
Identity = 108/150 (72.00%), Postives = 127/150 (84.67%), Query Frame = 1


Query: 4   MSTAKLPTRCMYNAPCKNQLRSAIIKCPWSIGSTSNISKSFGLKSCPSFRACAMAVYKIK 63
           MST  LPT CM+ +  +N++ SA I+ P S+GS  +ISK+FGLKS P FRA AMAVYKIK
Sbjct: 30  MSTVNLPTHCMFRSATQNRIASAFIRSPSSLGSVKSISKAFGLKSSPCFRATAMAVYKIK 89

Query: 64  LVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDGSFLD 123
           L+ P G+EHEF+A DD YILD+AE AGV+LPYSCRAGACSTCAG+MVSGSVDQSDGSFLD
Sbjct: 90  LIGPEGEEHEFDAPDDAYILDSAENAGVELPYSCRAGACSTCAGQMVSGSVDQSDGSFLD 149

Query: 124 DSQMAEGYLLTCVSLPTADCVIHTHKEGEL 154
           D QM +GYLLTC+S PT+DCVIHTHKEG+L
Sbjct: 150 DKQMEKGYLLTCISYPTSDCVIHTHKEGDL 179

[Close]

BLAST of Cla001097 vs. TrEMBL
Match: A5B3C7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038770 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.6e-57
Identity = 108/150 (72.00%), Postives = 126/150 (84.00%), Query Frame = 1


Query: 4   MSTAKLPTRCMYNAPCKNQLRSAIIKCPWSIGSTSNISKSFGLKSCPSFRACAMAVYKIK 63
           MST  LPT CM+ +  +N + SA I+ P S+GS  +ISK+FGLKS P FRA AMAVYKIK
Sbjct: 1   MSTVNLPTHCMFRSATQNXIASAFIRSPSSLGSVKSISKAFGLKSSPCFRATAMAVYKIK 60

Query: 64  LVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDGSFLD 123
           L+ P G+EHEF+A DD YILD+AE AGV+LPYSCRAGACSTCAG+MVSGSVDQSDGSFLD
Sbjct: 61  LIGPEGEEHEFDAPDDAYILDSAENAGVELPYSCRAGACSTCAGQMVSGSVDQSDGSFLD 120

Query: 124 DSQMAEGYLLTCVSLPTADCVIHTHKEGEL 154
           D QM +GYLLTC+S PT+DCVIHTHKEG+L
Sbjct: 121 DKQMEKGYLLTCISYPTSDCVIHTHKEGDL 150

[Close]

BLAST of Cla001097 vs. TrEMBL
Match: V7AFQ6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G094400g PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.0e-56
Identity = 108/154 (70.13%), Postives = 130/154 (84.42%), Query Frame = 1


Query: 1   MSTMSTAKLPTRCMYNAPCKNQLRSAI-IKCPWSIGSTSNISKSFGLKSCPSFRACAMAV 60
           M+T+ST K+ + CM+  P KNQ   A  +KCP S+GS  ++S+SFGLKS  SFR  AMA 
Sbjct: 1   MATLSTVKVSSHCMFQTPNKNQFTLATTVKCPSSLGSVKSVSRSFGLKSSSSFRVTAMAS 60

Query: 61  YKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDG 120
           YK+KL+ P GKE+EFEASDDTYILDAAE+AGV+LPYSCRAGACSTCAGK+V+GSVDQSDG
Sbjct: 61  YKVKLIGPDGKENEFEASDDTYILDAAEDAGVELPYSCRAGACSTCAGKIVAGSVDQSDG 120

Query: 121 SFLDDSQMAEGYLLTCVSLPTADCVIHTHKEGEL 154
           SFLDD+Q+ EG++LTC+S PTADCVI THKEGEL
Sbjct: 121 SFLDDNQLKEGFVLTCISYPTADCVIETHKEGEL 154

[Close]

BLAST of Cla001097 vs. TrEMBL
Match: A0A0S3SC87_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G165400 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 6.5e-56
Identity = 110/154 (71.43%), Postives = 129/154 (83.77%), Query Frame = 1


Query: 1   MSTMSTAKLPTRCMYNAPCKNQLR-SAIIKCPWSIGSTSNISKSFGLKSCPSFRACAMAV 60
           M+T+S+ K+ + CM+  P KNQ      +KCP S+GS  ++S++FGLKS  SFR  AMA 
Sbjct: 1   MATLSSVKVSSHCMFQIPSKNQFTFGTTVKCP-SLGSIKSVSRTFGLKSSSSFRVTAMAS 60

Query: 61  YKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDG 120
           YKIKL+ P GKE+EFEASDDTYILDAAE+AGV+LPYSCRAGACSTCAGK+VSGSVDQSDG
Sbjct: 61  YKIKLIGPDGKENEFEASDDTYILDAAEDAGVELPYSCRAGACSTCAGKIVSGSVDQSDG 120

Query: 121 SFLDDSQMAEGYLLTCVSLPTADCVIHTHKEGEL 154
           SFLDD+QM EG+LLTCVS PTADCVI THKEGEL
Sbjct: 121 SFLDDNQMKEGFLLTCVSYPTADCVIETHKEGEL 153

[Close]

BLAST of Cla001097 vs. TAIR10
Match: AT2G27510.1 (AT2G27510.1 ferredoxin 3)

HSP 1 Score: 179.5 bits (454), Expect = 1.6e-45
Identity = 92/154 (59.74%), Postives = 113/154 (73.38%), Query Frame = 1


Query: 4   MSTAKLPTRCMYNAPCKNQLRSAII---KCPWSIGSTSNISKSFGLK-SCPSFRACAMAV 63
           M+T ++ +  M  A  ++Q  + +I       S+GST  +S+SFGLK S  S  A   AV
Sbjct: 1   MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAV 60

Query: 64  YKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDG 123
           YK+KL+ P G+E EFE  DD YILDAAEEAGVDLPYSCRAGACSTCAG++VSG+VDQSDG
Sbjct: 61  YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG 120

Query: 124 SFLDDSQMAEGYLLTCVSLPTADCVIHTHKEGEL 154
           SFL+DS + +GY+LTCV+ P +DCVIHTHKE EL
Sbjct: 121 SFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154

[Close]

BLAST of Cla001097 vs. TAIR10
Match: AT1G10960.1 (AT1G10960.1 ferredoxin 1)

HSP 1 Score: 150.2 bits (378), Expect = 1.0e-36
Identity = 74/115 (64.35%), Postives = 87/115 (75.65%), Query Frame = 1


Query: 38  SNISKSFGLKSCPSF--RACAMAVYKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPY 97
           +N    FGLKS  +   R  AMA YK+K + P G E E E  +D Y+LDAAEEAG+DLPY
Sbjct: 31  ANTQSLFGLKSSTARGGRVTAMATYKVKFITPEG-EQEVECEEDVYVLDAAEEAGLDLPY 90

Query: 98  SCRAGACSTCAGKMVSGSVDQSDGSFLDDSQMAEGYLLTCVSLPTADCVIHTHKE 151
           SCRAG+CS+CAGK+VSGS+DQSD SFLDD QM+EGY+LTCV+ PT+D VI THKE
Sbjct: 91  SCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKE 144

[Close]

BLAST of Cla001097 vs. TAIR10
Match: AT1G60950.1 (AT1G60950.1 2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 148.7 bits (374), Expect = 3.0e-36
Identity = 79/155 (50.97%), Postives = 100/155 (64.52%), Query Frame = 1


Query: 2   STMSTAKLPTRCMYNAPCKNQLRSAIIKCPWSIGSTSNISKSFGLKS--CPSFRACAMAV 61
           + +S+A + T  +  +P    LRS           ++N    FGLKS      R  AMA 
Sbjct: 4   TALSSAIVGTSFIRRSPAPISLRSL---------PSANTQSLFGLKSGTARGGRVTAMAT 63

Query: 62  YKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDG 121
           YK+K + P G E E E  DD Y+LDAAEEAG+DLPYSCRAG+CS+CAGK+VSGSVDQSD 
Sbjct: 64  YKVKFITPEG-ELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQ 123

Query: 122 SFLDDSQMAEGYLLTCVSLPTADCVIHTHKEGELI 155
           SFLDD Q+ EG++LTC + PT+D  I THKE +++
Sbjct: 124 SFLDDEQIGEGFVLTCAAYPTSDVTIETHKEEDIV 148

[Close]

BLAST of Cla001097 vs. TAIR10
Match: AT5G10000.1 (AT5G10000.1 ferredoxin 4)

HSP 1 Score: 128.6 bits (322), Expect = 3.2e-30
Identity = 54/94 (57.45%), Postives = 74/94 (78.72%), Query Frame = 1


Query: 61  KIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDGS 120
           K+KL+ P G+E E E ++D  IL++AE AG++LPYSCR+G C TC GK+VSG VDQS GS
Sbjct: 55  KVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGS 114

Query: 121 FLDDSQMAEGYLLTCVSLPTADCVIHTHKEGELI 155
           FL++ Q+ +GY+LTC++LP  DCV++THK+ +LI
Sbjct: 115 FLEEEQIQKGYILTCIALPLEDCVVYTHKQSDLI 148

[Close]

BLAST of Cla001097 vs. TAIR10
Match: AT4G14890.1 (AT4G14890.1 2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 84.0 bits (206), Expect = 9.1e-17
Identity = 44/95 (46.32%), Postives = 54/95 (56.84%), Query Frame = 1


Query: 60  YKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDG 119
           YK+ +VE  GK  E E   D  IL  A ++G+D+PY C  G C TC  K+V+G+VDQS G
Sbjct: 53  YKV-VVEHDGKTTELEVEPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTGTVDQS-G 112

Query: 120 SFLDDSQMAEGYLLTCVSLPTADCVIHTHKEGELI 155
             L D  +  GY L C S PT+DC I    E EL+
Sbjct: 113 GMLSDDVVERGYTLLCASYPTSDCHIKMIPEEELL 145

[Close]

BLAST of Cla001097 vs. NCBI nr
Match: gi|700209835|gb|KGN64931.1| (hypothetical protein Csa_1G163160 [Cucumis sativus])

HSP 1 Score: 276.2 bits (705), Expect = 3.5e-71
Identity = 135/154 (87.66%), Postives = 139/154 (90.26%), Query Frame = 1


Query: 1   MSTMSTAKLPTRCMYNAPCKNQLRSAIIKCPWSIGSTSNISKSFGLKSCPSFRACAMAVY 60
           MSTMSTAKLPT  MYN   KNQL S IIKCP SIGST NI KSFGL S PSFRACAMA +
Sbjct: 1   MSTMSTAKLPTHFMYNTQSKNQLGSTIIKCPSSIGSTRNILKSFGLNSRPSFRACAMAAF 60

Query: 61  KIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDGS 120
           KIKLVEPCGKEHEFEASDDTYILDAAEEAG+DLPYSCRAGACSTCAGK+VSGSVDQSDGS
Sbjct: 61  KIKLVEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKIVSGSVDQSDGS 120

Query: 121 FLDDSQMAEGYLLTCVSLPTADCVIHTHKEGELI 155
           FLDD QMA GYLLTC+SLPTADCVIHTHKEGELI
Sbjct: 121 FLDDDQMANGYLLTCISLPTADCVIHTHKEGELI 154

[Close]

BLAST of Cla001097 vs. NCBI nr
Match: gi|659071691|ref|XP_008461439.1| (PREDICTED: ferredoxin, root R-B2 [Cucumis melo])

HSP 1 Score: 268.9 bits (686), Expect = 5.7e-69
Identity = 135/154 (87.66%), Postives = 139/154 (90.26%), Query Frame = 1


Query: 1   MSTMSTAKLPTRCMYNAPCKNQLRSAIIKCPWSIGSTSNISKSFGLKSCPSFRACAMAVY 60
           MSTMSTAKLPT  MYN   KNQL S IIKCP SIGST NI KSFGL S PSFRA AMAV+
Sbjct: 1   MSTMSTAKLPTHFMYNTQSKNQLGSTIIKCPSSIGSTRNIWKSFGLNSRPSFRARAMAVF 60

Query: 61  KIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDGS 120
           KIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGK+VSGSV+QSDGS
Sbjct: 61  KIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSDGS 120

Query: 121 FLDDSQMAEGYLLTCVSLPTADCVIHTHKEGELI 155
           FLDD QMA+GYLLTCVSLPTADCVIHTHKE ELI
Sbjct: 121 FLDDDQMAKGYLLTCVSLPTADCVIHTHKEEELI 154

[Close]

BLAST of Cla001097 vs. NCBI nr
Match: gi|731394574|ref|XP_010651884.1| (PREDICTED: ferredoxin-3, chloroplastic [Vitis vinifera])

HSP 1 Score: 230.3 bits (586), Expect = 2.2e-57
Identity = 108/150 (72.00%), Postives = 127/150 (84.67%), Query Frame = 1


Query: 4   MSTAKLPTRCMYNAPCKNQLRSAIIKCPWSIGSTSNISKSFGLKSCPSFRACAMAVYKIK 63
           MST  LPT CM+ +  +N++ SA I+ P S+GS  +ISK+FGLKS P FRA AMAVYKIK
Sbjct: 46  MSTVNLPTHCMFRSATQNRIASAFIRSPSSLGSVKSISKAFGLKSSPCFRATAMAVYKIK 105

Query: 64  LVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDGSFLD 123
           L+ P G+EHEF+A DD YILD+AE AGV+LPYSCRAGACSTCAG+MVSGSVDQSDGSFLD
Sbjct: 106 LIGPEGEEHEFDAPDDAYILDSAENAGVELPYSCRAGACSTCAGQMVSGSVDQSDGSFLD 165

Query: 124 DSQMAEGYLLTCVSLPTADCVIHTHKEGEL 154
           D QM +GYLLTC+S PT+DCVIHTHKEG+L
Sbjct: 166 DKQMEKGYLLTCISYPTSDCVIHTHKEGDL 195

[Close]

BLAST of Cla001097 vs. NCBI nr
Match: gi|147819070|emb|CAN74125.1| (hypothetical protein VITISV_038770 [Vitis vinifera])

HSP 1 Score: 229.6 bits (584), Expect = 3.8e-57
Identity = 108/150 (72.00%), Postives = 126/150 (84.00%), Query Frame = 1


Query: 4   MSTAKLPTRCMYNAPCKNQLRSAIIKCPWSIGSTSNISKSFGLKSCPSFRACAMAVYKIK 63
           MST  LPT CM+ +  +N + SA I+ P S+GS  +ISK+FGLKS P FRA AMAVYKIK
Sbjct: 1   MSTVNLPTHCMFRSATQNXIASAFIRSPSSLGSVKSISKAFGLKSSPCFRATAMAVYKIK 60

Query: 64  LVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDGSFLD 123
           L+ P G+EHEF+A DD YILD+AE AGV+LPYSCRAGACSTCAG+MVSGSVDQSDGSFLD
Sbjct: 61  LIGPEGEEHEFDAPDDAYILDSAENAGVELPYSCRAGACSTCAGQMVSGSVDQSDGSFLD 120

Query: 124 DSQMAEGYLLTCVSLPTADCVIHTHKEGEL 154
           D QM +GYLLTC+S PT+DCVIHTHKEG+L
Sbjct: 121 DKQMEKGYLLTCISYPTSDCVIHTHKEGDL 150

[Close]

BLAST of Cla001097 vs. NCBI nr
Match: gi|593203955|ref|XP_007132438.1| (hypothetical protein PHAVU_011G094400g [Phaseolus vulgaris])

HSP 1 Score: 227.6 bits (579), Expect = 1.4e-56
Identity = 108/154 (70.13%), Postives = 130/154 (84.42%), Query Frame = 1


Query: 1   MSTMSTAKLPTRCMYNAPCKNQLRSAI-IKCPWSIGSTSNISKSFGLKSCPSFRACAMAV 60
           M+T+ST K+ + CM+  P KNQ   A  +KCP S+GS  ++S+SFGLKS  SFR  AMA 
Sbjct: 1   MATLSTVKVSSHCMFQTPNKNQFTLATTVKCPSSLGSVKSVSRSFGLKSSSSFRVTAMAS 60

Query: 61  YKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKMVSGSVDQSDG 120
           YK+KL+ P GKE+EFEASDDTYILDAAE+AGV+LPYSCRAGACSTCAGK+V+GSVDQSDG
Sbjct: 61  YKVKLIGPDGKENEFEASDDTYILDAAEDAGVELPYSCRAGACSTCAGKIVAGSVDQSDG 120

Query: 121 SFLDDSQMAEGYLLTCVSLPTADCVIHTHKEGEL 154
           SFLDD+Q+ EG++LTC+S PTADCVI THKEGEL
Sbjct: 121 SFLDDNQLKEGFVLTCISYPTADCVIETHKEGEL 154

The following BLAST results are available for this feature:

BLAST of Cla001097 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FER3_MAIZE	4.4e-45	60.93	Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1	[more]
FER3_ARATH	2.8e-44	59.74	Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1	[more]
FER6_MAIZE	3.6e-39	55.56	Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1	[more]
FER2_RAPSA	1.4e-35	70.83	Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1	[more]
FER1_ARATH	1.8e-35	64.35	Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1	[more]

BLAST of Cla001097 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY90_CUCSA	2.5e-71	87.66	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G163160 PE=4 SV=1	[more]
F6HHG1_VITVI	1.6e-57	72.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0080g00410 PE=4 SV=...	[more]
A5B3C7_VITVI	2.6e-57	72.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038770 PE=4 SV=1	[more]
V7AFQ6_PHAVU	1.0e-56	70.13	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G094400g PE=4 SV=1	[more]
A0A0S3SC87_PHAAN	6.5e-56	71.43	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G165400 PE=...	[more]

BLAST of Cla001097 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27510.1	1.6e-45	59.74	ferredoxin 3	[more]
AT1G10960.1	1.0e-36	64.35	ferredoxin 1	[more]
AT1G60950.1	3.0e-36	50.97	2Fe-2S ferredoxin-like superfamily protein	[more]
AT5G10000.1	3.2e-30	57.45	ferredoxin 4	[more]
AT4G14890.1	9.1e-17	46.32	2Fe-2S ferredoxin-like superfamily protein	[more]

BLAST of Cla001097 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209835\|gb\|KGN64931.1\|	3.5e-71	87.66	hypothetical protein Csa_1G163160 [Cucumis sativus]	[more]
gi\|659071691\|ref\|XP_008461439.1\|	5.7e-69	87.66	PREDICTED: ferredoxin, root R-B2 [Cucumis melo]	[more]
gi\|731394574\|ref\|XP_010651884.1\|	2.2e-57	72.00	PREDICTED: ferredoxin-3, chloroplastic [Vitis vinifera]	[more]
gi\|147819070\|emb\|CAN74125.1\|	3.8e-57	72.00	hypothetical protein VITISV_038770 [Vitis vinifera]	[more]
gi\|593203955\|ref\|XP_007132438.1\|	1.4e-56	70.13	hypothetical protein PHAVU_011G094400g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001041	2Fe-2S_ferredoxin-type
IPR006058	2Fe2S_fd_BS
IPR010241	Fd_pln
IPR012675	Beta-grasp_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0009055	electron carrier activity
GO:0051536	iron-sulfur cluster binding
GO:0051537	2 iron, 2 sulfur cluster binding

Vocabulary: **Biological Process**
Term	Definition
GO:0022900	electron transport chain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0022900	electron transport chain
biological_process	GO:0006412	translation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU17585	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU20544	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU29621	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU49717	watermelon EST collection version 2.0	transcribed_cluster
WMU57469	watermelon EST collection version 2.0	transcribed_cluster
WMU60101	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla001097	Cla001097.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU20544	WMU20544	transcribed_cluster
WMU29621	WMU29621	transcribed_cluster
WMU49717	WMU49717	transcribed_cluster
WMU17585	WMU17585	transcribed_cluster
WMU60101	WMU60101	transcribed_cluster
WMU57469	WMU57469	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 66..140 score: 2.7
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROFILE	PS51085	2FE2S_FER_2	coord: 60..151 score: 12
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	unknown	SSF54292	2Fe-2S ferredoxin-like	coord: 56..151 score: 4.37
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 97..105 scor
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAMs	TIGR02008	TIGR02008	coord: 58..153 score: 8.5
IPR012675	Beta-grasp domain	GENE3D	G3DSA:3.10.20.30		coord: 65..153 score: 1.4
None	No IPR available	PANTHER	PTHR19370	NADH-CYTOCHROME B5 REDUCTASE	coord: 4..153 score: 5.5
None	No IPR available	PANTHER	PTHR19370:SF127	SUBFAMILY NOT NAMED	coord: 4..153 score: 5.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla001097	Cla97C01G011570	Watermelon (97103) v2	wmwmbB243
Cla001097	ClCG01G012230	Watermelon (Charleston Gray)	wcgwmB149
Cla001097	CmaCh18G006570	Cucurbita maxima (Rimu)	cmawmB383
Cla001097	CmoCh18G006650	Cucurbita moschata (Rifu)	cmowmB382
Cla001097	Lsi03G001200	Bottle gourd (USVL1VR-Ls)	lsiwmB265
Cla001097	Cp4.1LG09g05620	Cucurbita pepo (Zucchini)	cpewmB045
Cla001097	CsGy1G014590	Cucumber (Gy14) v2	cgybwmB060
Cla001097	Carg26273	Silver-seed gourd	carwmB0000
Cla001097	Bhi08G000048	Wax gourd	wgowmB506

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla001097	Cucurbita pepo (Zucchini)	cpewmB518