Cp4.1LG09g05620 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG09g05620
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Ferredoxin family protein
Location	Cp4.1LG09 : 4590420 .. 4590890 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAACCATGTCAACTGCAAAGCTTCCTTCCCGCACCATGTTCAACACGTCGGCGCCATGTAAAAACCAATTCAGAAGCAGCATTATCAAGTGTCCATCTTCGATCGGATCCACAAGCAACATATCGAAATCATTCGGCTTGAAATCATCGTCCTCATCCAGAACCACTGCAATGGCAGTCTACAAGATCAAACTTATCGAACCATGTGGGAAAGAGCACGAGTTTGAGGCATCTGATGATACCTACATTCTTGATGCAGCTGAAGAAGCAGGAATTGACCTTCCATATTCTTGCAGGGCAGGGGCGTGCTCTACGTGCGCTGGGAAATTCGTTTCGGGTTCAGTCGATCAGTCGGACGGGTCGTTCCTGGACGATAGTCAAATGGAAGAGGGGTATTTGTTAACCTGTATTTCACACCCAACTTCAGACTGTGTGATTCTCACACACAAAGAAGGAGAACTGATCTGA

mRNA sequence

ATGTCAACCATGTCAACTGCAAAGCTTCCTTCCCGCACCATGTTCAACACGTCGGCGCCATGTAAAAACCAATTCAGAAGCAGCATTATCAAGTGTCCATCTTCGATCGGATCCACAAGCAACATATCGAAATCATTCGGCTTGAAATCATCGTCCTCATCCAGAACCACTGCAATGGCAGTCTACAAGATCAAACTTATCGAACCATGTGGGAAAGAGCACGAGTTTGAGGCATCTGATGATACCTACATTCTTGATGCAGCTGAAGAAGCAGGAATTGACCTTCCATATTCTTGCAGGGCAGGGGCGTGCTCTACGTGCGCTGGGAAATTCGTTTCGGGTTCAGTCGATCAGTCGGACGGGTCGTTCCTGGACGATAGTCAAATGGAAGAGGGGTATTTGTTAACCTGTATTTCACACCCAACTTCAGACTGTGTGATTCTCACACACAAAGAAGGAGAACTGATCTGA

Coding sequence (CDS)

ATGTCAACCATGTCAACTGCAAAGCTTCCTTCCCGCACCATGTTCAACACGTCGGCGCCATGTAAAAACCAATTCAGAAGCAGCATTATCAAGTGTCCATCTTCGATCGGATCCACAAGCAACATATCGAAATCATTCGGCTTGAAATCATCGTCCTCATCCAGAACCACTGCAATGGCAGTCTACAAGATCAAACTTATCGAACCATGTGGGAAAGAGCACGAGTTTGAGGCATCTGATGATACCTACATTCTTGATGCAGCTGAAGAAGCAGGAATTGACCTTCCATATTCTTGCAGGGCAGGGGCGTGCTCTACGTGCGCTGGGAAATTCGTTTCGGGTTCAGTCGATCAGTCGGACGGGTCGTTCCTGGACGATAGTCAAATGGAAGAGGGGTATTTGTTAACCTGTATTTCACACCCAACTTCAGACTGTGTGATTCTCACACACAAAGAAGGAGAACTGATCTGA

Protein sequence

MSTMSTAKLPSRTMFNTSAPCKNQFRSSIIKCPSSIGSTSNISKSFGLKSSSSSRTTAMAVYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSDGSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI

Homology

[Close]

BLAST of Cp4.1LG09g05620 vs. Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.9e-44
Identity = 87/132 (65.91%), Postives = 104/132 (78.79%), Query Frame = 1


Query: 24  QFRSSIIKCPSSIGSTSNISKSFGLKSSSSSRTTAMAVYKIKLIEPCGKEHEFEASDDTY 83
           Q   + +K PSS+   S ++K   LK+S     +AMAVYK+KL+ P G+EHEF+A DD Y
Sbjct: 20  QASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVSAMAVYKVKLVGPEGEEHEFDAPDDAY 79

Query: 84  ILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSDGSFLDDSQMEEGYLLTCISHPTS 143
           ILDAAE AG++LPYSCRAGACSTCAGK  SGSVDQSDGSFLDD Q EEGY+LTC+S+P S
Sbjct: 80  ILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFLDDGQQEEGYVLTCVSYPKS 139

Query: 144 DCVILTHKEGEL 156
           DCVI THKEG+L
Sbjct: 140 DCVIHTHKEGDL 151

[Close]

BLAST of Cp4.1LG09g05620 vs. Swiss-Prot
Match: FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 6.4e-44
Identity = 94/156 (60.26%), Postives = 120/156 (76.92%), Query Frame = 1


Query: 4   MSTAKLPSRTMFNTSAPCKNQFRSSIIKCPS---SIGSTSNISKSFGLK-SSSSSRTTAM 63
           M+T ++ S +M  T A  ++Q  + +I   S   S+GST  +S+SFGLK S++S   T  
Sbjct: 1   MATVRISSTSM--TKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMS 60

Query: 64  AVYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQS 123
           AVYK+KL+ P G+E EFE  DD YILDAAEEAG+DLPYSCRAGACSTCAG+ VSG+VDQS
Sbjct: 61  AVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQS 120

Query: 124 DGSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGEL 156
           DGSFL+DS +E+GY+LTC+++P SDCVI THKE EL
Sbjct: 121 DGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154

[Close]

BLAST of Cp4.1LG09g05620 vs. Swiss-Prot
Match: FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 9.9e-37
Identity = 77/115 (66.96%), Postives = 91/115 (79.13%), Query Frame = 1


Query: 40  SNISKSFGLKSSSS--SRTTAMAVYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPY 99
           +N    FGLKSS++   R TAMA YK+K I P G E E E  +D Y+LDAAEEAG+DLPY
Sbjct: 31  ANTQSLFGLKSSTARGGRVTAMATYKVKFITPEG-EQEVECEEDVYVLDAAEEAGLDLPY 90

Query: 100 SCRAGACSTCAGKFVSGSVDQSDGSFLDDSQMEEGYLLTCISHPTSDCVILTHKE 153
           SCRAG+CS+CAGK VSGS+DQSD SFLDD QM EGY+LTC+++PTSD VI THKE
Sbjct: 91  SCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKE 144

[Close]

BLAST of Cp4.1LG09g05620 vs. Swiss-Prot
Match: FER1_MESCR (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.9e-36
Identity = 85/152 (55.92%), Postives = 106/152 (69.74%), Query Frame = 1


Query: 5   STAKLPSRTMFNTSAPCKNQFRSSIIKCPSSIGSTSNISKSFGLKSSSS-SRTTAMAVYK 64
           +TA L   TM    AP      +++   P+++G        FGLKSS+S  R TAMA YK
Sbjct: 4   TTAALSGATMSTAFAPKTPPMTAAL---PTNVGRAL-----FGLKSSASRGRVTAMAAYK 63

Query: 65  IKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSDGSF 124
           + L+ P GK+ E E  DD YILDAAEEAGIDLPYSCRAG+CS+CAGK  SGSV+Q DGSF
Sbjct: 64  VTLVTPEGKQ-ELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSF 123

Query: 125 LDDSQMEEGYLLTCISHPTSDCVILTHKEGEL 156
           LDD Q++EG++LTC+++PT D  I THKE EL
Sbjct: 124 LDDDQIKEGWVLTCVAYPTGDVTIETHKEEEL 146

[Close]

BLAST of Cp4.1LG09g05620 vs. Swiss-Prot
Match: FER2_RAPSA (Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.1e-35
Identity = 68/96 (70.83%), Postives = 82/96 (85.42%), Query Frame = 1


Query: 60  AVYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQS 119
           AVYK+KLI P G+E+EFE  DD +ILDAAEEAG+DLPYSCRAGACSTCAG+ V G VDQS
Sbjct: 2   AVYKVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQS 61

Query: 120 DGSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGEL 156
           +GSFL+D   E+G++LTC+++P SDCVI THKE EL
Sbjct: 62  EGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETEL 97

[Close]

BLAST of Cp4.1LG09g05620 vs. TrEMBL
Match: A0A0A0LY90_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G163160 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.6e-62
Identity = 127/156 (81.41%), Postives = 134/156 (85.90%), Query Frame = 1


Query: 1   MSTMSTAKLPSRTMFNTSAPCKNQFRSSIIKCPSSIGSTSNISKSFGLKSSSSSRTTAMA 60
           MSTMSTAKLP+  M+NT +  KNQ  S+IIKCPSSIGST NI KSFGL S  S R  AMA
Sbjct: 1   MSTMSTAKLPTHFMYNTQS--KNQLGSTIIKCPSSIGSTRNILKSFGLNSRPSFRACAMA 60

Query: 61  VYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSD 120
            +KIKL+EPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGK VSGSVDQSD
Sbjct: 61  AFKIKLVEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKIVSGSVDQSD 120

Query: 121 GSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI 157
           GSFLDD QM  GYLLTCIS PT+DCVI THKEGELI
Sbjct: 121 GSFLDDDQMANGYLLTCISLPTADCVIHTHKEGELI 154

[Close]

BLAST of Cp4.1LG09g05620 vs. TrEMBL
Match: V7AFQ6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G094400g PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 6.6e-56
Identity = 113/156 (72.44%), Postives = 136/156 (87.18%), Query Frame = 1


Query: 1   MSTMSTAKLPSRTMFNTSAPCKNQFR-SSIIKCPSSIGSTSNISKSFGLKSSSSSRTTAM 60
           M+T+ST K+ S  MF T  P KNQF  ++ +KCPSS+GS  ++S+SFGLKSSSS R TAM
Sbjct: 1   MATLSTVKVSSHCMFQT--PNKNQFTLATTVKCPSSLGSVKSVSRSFGLKSSSSFRVTAM 60

Query: 61  AVYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQS 120
           A YK+KLI P GKE+EFEASDDTYILDAAE+AG++LPYSCRAGACSTCAGK V+GSVDQS
Sbjct: 61  ASYKVKLIGPDGKENEFEASDDTYILDAAEDAGVELPYSCRAGACSTCAGKIVAGSVDQS 120

Query: 121 DGSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGEL 156
           DGSFLDD+Q++EG++LTCIS+PT+DCVI THKEGEL
Sbjct: 121 DGSFLDDNQLKEGFVLTCISYPTADCVIETHKEGEL 154

[Close]

BLAST of Cp4.1LG09g05620 vs. TrEMBL
Match: A0A151TNV0_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_022369 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.1e-53
Identity = 110/156 (70.51%), Postives = 132/156 (84.62%), Query Frame = 1


Query: 1   MSTMSTAKLPSRTMFNTSAPCKNQFR-SSIIKCPSSIGSTSNISKSFGLKSSSSSRTTAM 60
           M+T+ST  L    MF T  P KNQ   S+ +KCPSS+GS  ++S+SFGLKSSSS R TAM
Sbjct: 1   MATLSTVNLSPHCMFQT--PSKNQSTISTTVKCPSSLGSVRSVSRSFGLKSSSSFRVTAM 60

Query: 61  AVYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQS 120
           A YK+KLI P GKE+EFEA+DDTYILDAAE AGI+LPYSCRAGACSTCAGK V+G+VDQS
Sbjct: 61  ASYKVKLIGPDGKENEFEAADDTYILDAAENAGIELPYSCRAGACSTCAGKIVAGAVDQS 120

Query: 121 DGSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGEL 156
           DGSFLDD+Q++EG+LLTC+S+PT+DCVI THKEG+L
Sbjct: 121 DGSFLDDNQLKEGFLLTCVSYPTADCVIETHKEGDL 154

[Close]

BLAST of Cp4.1LG09g05620 vs. TrEMBL
Match: A0A0L9V7A9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g137600 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.1e-53
Identity = 112/156 (71.79%), Postives = 133/156 (85.26%), Query Frame = 1


Query: 1   MSTMSTAKLPSRTMFNTSAPCKNQFR-SSIIKCPSSIGSTSNISKSFGLKSSSSSRTTAM 60
           M+T+S+ K+ S  MF    P KNQF   + +KCPS +GS  ++S++FGLKSSSS R TAM
Sbjct: 1   MATLSSVKVSSHCMFQI--PSKNQFTFGTTVKCPS-LGSIKSVSRTFGLKSSSSFRVTAM 60

Query: 61  AVYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQS 120
           A YKIKLI P GKE+EFEASDDTYILDAAE+AG++LPYSCRAGACSTCAGK VSGSVDQS
Sbjct: 61  ASYKIKLIGPDGKENEFEASDDTYILDAAEDAGVELPYSCRAGACSTCAGKIVSGSVDQS 120

Query: 121 DGSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGEL 156
           DGSFLDD+QM+EG+LLTC+S+PT+DCVI THKEGEL
Sbjct: 121 DGSFLDDNQMKEGFLLTCVSYPTADCVIETHKEGEL 153

[Close]

BLAST of Cp4.1LG09g05620 vs. TrEMBL
Match: A0A0S3SC87_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G165400 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.1e-53
Identity = 112/156 (71.79%), Postives = 133/156 (85.26%), Query Frame = 1


Query: 1   MSTMSTAKLPSRTMFNTSAPCKNQFR-SSIIKCPSSIGSTSNISKSFGLKSSSSSRTTAM 60
           M+T+S+ K+ S  MF    P KNQF   + +KCPS +GS  ++S++FGLKSSSS R TAM
Sbjct: 1   MATLSSVKVSSHCMFQI--PSKNQFTFGTTVKCPS-LGSIKSVSRTFGLKSSSSFRVTAM 60

Query: 61  AVYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQS 120
           A YKIKLI P GKE+EFEASDDTYILDAAE+AG++LPYSCRAGACSTCAGK VSGSVDQS
Sbjct: 61  ASYKIKLIGPDGKENEFEASDDTYILDAAEDAGVELPYSCRAGACSTCAGKIVSGSVDQS 120

Query: 121 DGSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGEL 156
           DGSFLDD+QM+EG+LLTC+S+PT+DCVI THKEGEL
Sbjct: 121 DGSFLDDNQMKEGFLLTCVSYPTADCVIETHKEGEL 153

[Close]

BLAST of Cp4.1LG09g05620 vs. TAIR10
Match: AT2G27510.1 (AT2G27510.1 ferredoxin 3)

HSP 1 Score: 178.3 bits (451), Expect = 3.6e-45
Identity = 94/156 (60.26%), Postives = 120/156 (76.92%), Query Frame = 1


Query: 4   MSTAKLPSRTMFNTSAPCKNQFRSSIIKCPS---SIGSTSNISKSFGLK-SSSSSRTTAM 63
           M+T ++ S +M  T A  ++Q  + +I   S   S+GST  +S+SFGLK S++S   T  
Sbjct: 1   MATVRISSTSM--TKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMS 60

Query: 64  AVYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQS 123
           AVYK+KL+ P G+E EFE  DD YILDAAEEAG+DLPYSCRAGACSTCAG+ VSG+VDQS
Sbjct: 61  AVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQS 120

Query: 124 DGSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGEL 156
           DGSFL+DS +E+GY+LTC+++P SDCVI THKE EL
Sbjct: 121 DGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154

[Close]

BLAST of Cp4.1LG09g05620 vs. TAIR10
Match: AT1G10960.1 (AT1G10960.1 ferredoxin 1)

HSP 1 Score: 154.5 bits (389), Expect = 5.6e-38
Identity = 77/115 (66.96%), Postives = 91/115 (79.13%), Query Frame = 1


Query: 40  SNISKSFGLKSSSS--SRTTAMAVYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPY 99
           +N    FGLKSS++   R TAMA YK+K I P G E E E  +D Y+LDAAEEAG+DLPY
Sbjct: 31  ANTQSLFGLKSSTARGGRVTAMATYKVKFITPEG-EQEVECEEDVYVLDAAEEAGLDLPY 90

Query: 100 SCRAGACSTCAGKFVSGSVDQSDGSFLDDSQMEEGYLLTCISHPTSDCVILTHKE 153
           SCRAG+CS+CAGK VSGS+DQSD SFLDD QM EGY+LTC+++PTSD VI THKE
Sbjct: 91  SCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKE 144

[Close]

BLAST of Cp4.1LG09g05620 vs. TAIR10
Match: AT1G60950.1 (AT1G60950.1 2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 149.8 bits (377), Expect = 1.4e-36
Identity = 76/120 (63.33%), Postives = 92/120 (76.67%), Query Frame = 1


Query: 39  TSNISKSFGLKSSSS--SRTTAMAVYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLP 98
           ++N    FGLKS ++   R TAMA YK+K I P G E E E  DD Y+LDAAEEAGIDLP
Sbjct: 30  SANTQSLFGLKSGTARGGRVTAMATYKVKFITPEG-ELEVECDDDVYVLDAAEEAGIDLP 89

Query: 99  YSCRAGACSTCAGKFVSGSVDQSDGSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI 157
           YSCRAG+CS+CAGK VSGSVDQSD SFLDD Q+ EG++LTC ++PTSD  I THKE +++
Sbjct: 90  YSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTSDVTIETHKEEDIV 148

[Close]

BLAST of Cp4.1LG09g05620 vs. TAIR10
Match: AT5G10000.1 (AT5G10000.1 ferredoxin 4)

HSP 1 Score: 127.9 bits (320), Expect = 5.6e-30
Identity = 64/128 (50.00%), Postives = 89/128 (69.53%), Query Frame = 1


Query: 33  PSSIGSTSNISKS--FGLKSSSSS--RTTAMAVYKIKLIEPCGKEHEFEASDDTYILDAA 92
           PS    T+ ++ +  FGL SS  +  +  A    K+KLI P G+E E E ++D  IL++A
Sbjct: 21  PSQAQLTTRLNNTTYFGLSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESA 80

Query: 93  EEAGIDLPYSCRAGACSTCAGKFVSGSVDQSDGSFLDDSQMEEGYLLTCISHPTSDCVIL 152
           E AG++LPYSCR+G C TC GK VSG VDQS GSFL++ Q+++GY+LTCI+ P  DCV+ 
Sbjct: 81  ENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVY 140

Query: 153 THKEGELI 157
           THK+ +LI
Sbjct: 141 THKQSDLI 148

[Close]

BLAST of Cp4.1LG09g05620 vs. TAIR10
Match: AT4G14890.1 (AT4G14890.1 2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 87.4 bits (215), Expect = 8.3e-18
Identity = 52/125 (41.60%), Postives = 68/125 (54.40%), Query Frame = 1


Query: 43  SKSFGLKSSSSSRTT-----------AMAVYKIKLIEPCGKEHEFEASDDTYILDAAEEA 102
           S SF L++++ S TT               YK+ ++E  GK  E E   D  IL  A ++
Sbjct: 23  SFSFPLRNATLSTTTNRRNFLTTGRIIARAYKV-VVEHDGKTTELEVEPDETILSKALDS 82

Query: 103 GIDLPYSCRAGACSTCAGKFVSGSVDQSDGSFLDDSQMEEGYLLTCISHPTSDCVILTHK 157
           G+D+PY C  G C TC  K V+G+VDQS G  L D  +E GY L C S+PTSDC I    
Sbjct: 83  GLDVPYDCNLGVCMTCPAKLVTGTVDQS-GGMLSDDVVERGYTLLCASYPTSDCHIKMIP 142

[Close]

BLAST of Cp4.1LG09g05620 vs. NCBI nr
Match: gi|700209835|gb|KGN64931.1| (hypothetical protein Csa_1G163160 [Cucumis sativus])

HSP 1 Score: 245.7 bits (626), Expect = 5.2e-62
Identity = 127/156 (81.41%), Postives = 134/156 (85.90%), Query Frame = 1


Query: 1   MSTMSTAKLPSRTMFNTSAPCKNQFRSSIIKCPSSIGSTSNISKSFGLKSSSSSRTTAMA 60
           MSTMSTAKLP+  M+NT +  KNQ  S+IIKCPSSIGST NI KSFGL S  S R  AMA
Sbjct: 1   MSTMSTAKLPTHFMYNTQS--KNQLGSTIIKCPSSIGSTRNILKSFGLNSRPSFRACAMA 60

Query: 61  VYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSD 120
            +KIKL+EPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGK VSGSVDQSD
Sbjct: 61  AFKIKLVEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKIVSGSVDQSD 120

Query: 121 GSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI 157
           GSFLDD QM  GYLLTCIS PT+DCVI THKEGELI
Sbjct: 121 GSFLDDDQMANGYLLTCISLPTADCVIHTHKEGELI 154

[Close]

BLAST of Cp4.1LG09g05620 vs. NCBI nr
Match: gi|659071691|ref|XP_008461439.1| (PREDICTED: ferredoxin, root R-B2 [Cucumis melo])

HSP 1 Score: 241.5 bits (615), Expect = 9.8e-61
Identity = 124/156 (79.49%), Postives = 135/156 (86.54%), Query Frame = 1


Query: 1   MSTMSTAKLPSRTMFNTSAPCKNQFRSSIIKCPSSIGSTSNISKSFGLKSSSSSRTTAMA 60
           MSTMSTAKLP+  M+NT +  KNQ  S+IIKCPSSIGST NI KSFGL S  S R  AMA
Sbjct: 1   MSTMSTAKLPTHFMYNTQS--KNQLGSTIIKCPSSIGSTRNIWKSFGLNSRPSFRARAMA 60

Query: 61  VYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSD 120
           V+KIKL+EPCGKEHEFEASDDTYILDAAEEAG+DLPYSCRAGACSTCAGK VSGSV+QSD
Sbjct: 61  VFKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSD 120

Query: 121 GSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI 157
           GSFLDD QM +GYLLTC+S PT+DCVI THKE ELI
Sbjct: 121 GSFLDDDQMAKGYLLTCVSLPTADCVIHTHKEEELI 154

[Close]

BLAST of Cp4.1LG09g05620 vs. NCBI nr
Match: gi|593203955|ref|XP_007132438.1| (hypothetical protein PHAVU_011G094400g [Phaseolus vulgaris])

HSP 1 Score: 224.9 bits (572), Expect = 9.5e-56
Identity = 113/156 (72.44%), Postives = 136/156 (87.18%), Query Frame = 1


Query: 1   MSTMSTAKLPSRTMFNTSAPCKNQFR-SSIIKCPSSIGSTSNISKSFGLKSSSSSRTTAM 60
           M+T+ST K+ S  MF T  P KNQF  ++ +KCPSS+GS  ++S+SFGLKSSSS R TAM
Sbjct: 1   MATLSTVKVSSHCMFQT--PNKNQFTLATTVKCPSSLGSVKSVSRSFGLKSSSSFRVTAM 60

Query: 61  AVYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQS 120
           A YK+KLI P GKE+EFEASDDTYILDAAE+AG++LPYSCRAGACSTCAGK V+GSVDQS
Sbjct: 61  ASYKVKLIGPDGKENEFEASDDTYILDAAEDAGVELPYSCRAGACSTCAGKIVAGSVDQS 120

Query: 121 DGSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGEL 156
           DGSFLDD+Q++EG++LTCIS+PT+DCVI THKEGEL
Sbjct: 121 DGSFLDDNQLKEGFVLTCISYPTADCVIETHKEGEL 154

[Close]

BLAST of Cp4.1LG09g05620 vs. NCBI nr
Match: gi|950939830|ref|XP_014491925.1| (PREDICTED: ferredoxin [Vigna radiata var. radiata])

HSP 1 Score: 218.0 bits (554), Expect = 1.2e-53
Identity = 112/156 (71.79%), Postives = 133/156 (85.26%), Query Frame = 1


Query: 1   MSTMSTAKLPSRTMFNTSAPCKNQFR-SSIIKCPSSIGSTSNISKSFGLKSSSSSRTTAM 60
           M+T+S+ K+ S  MF    P KNQF   + +KCPS +GS  ++S++FGLKSSSS R TAM
Sbjct: 1   MATLSSVKVSSHCMFQI--PSKNQFTFGTTVKCPS-LGSVKSVSRTFGLKSSSSFRVTAM 60

Query: 61  AVYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQS 120
           A YKIKLI P GKE+EFEASDDTYILDAAE+AG++LPYSCRAGACSTCAGK VSGSVDQS
Sbjct: 61  ASYKIKLIGPDGKENEFEASDDTYILDAAEDAGVELPYSCRAGACSTCAGKIVSGSVDQS 120

Query: 121 DGSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGEL 156
           DGSFLDD+QM+EG+LLTC+S+PT+DCVI THKEGEL
Sbjct: 121 DGSFLDDNQMKEGFLLTCVSYPTADCVIETHKEGEL 153

[Close]

BLAST of Cp4.1LG09g05620 vs. NCBI nr
Match: gi|920708552|gb|KOM50549.1| (hypothetical protein LR48_Vigan08g137600 [Vigna angularis])

HSP 1 Score: 217.6 bits (553), Expect = 1.5e-53
Identity = 112/156 (71.79%), Postives = 133/156 (85.26%), Query Frame = 1


Query: 1   MSTMSTAKLPSRTMFNTSAPCKNQFR-SSIIKCPSSIGSTSNISKSFGLKSSSSSRTTAM 60
           M+T+S+ K+ S  MF    P KNQF   + +KCPS +GS  ++S++FGLKSSSS R TAM
Sbjct: 1   MATLSSVKVSSHCMFQI--PSKNQFTFGTTVKCPS-LGSIKSVSRTFGLKSSSSFRVTAM 60

Query: 61  AVYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQS 120
           A YKIKLI P GKE+EFEASDDTYILDAAE+AG++LPYSCRAGACSTCAGK VSGSVDQS
Sbjct: 61  ASYKIKLIGPDGKENEFEASDDTYILDAAEDAGVELPYSCRAGACSTCAGKIVSGSVDQS 120

Query: 121 DGSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGEL 156
           DGSFLDD+QM+EG+LLTC+S+PT+DCVI THKEGEL
Sbjct: 121 DGSFLDDNQMKEGFLLTCVSYPTADCVIETHKEGEL 153

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g05620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FER3_MAIZE	2.9e-44	65.91	Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1	[more]
FER3_ARATH	6.4e-44	60.26	Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1	[more]
FER1_ARATH	9.9e-37	66.96	Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1	[more]
FER1_MESCR	2.9e-36	55.92	Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1	[more]
FER2_RAPSA	1.1e-35	70.83	Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1	[more]

BLAST of Cp4.1LG09g05620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY90_CUCSA	3.6e-62	81.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G163160 PE=4 SV=1	[more]
V7AFQ6_PHAVU	6.6e-56	72.44	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G094400g PE=4 SV=1	[more]
A0A151TNV0_CAJCA	1.1e-53	70.51	Uncharacterized protein OS=Cajanus cajan GN=KK1_022369 PE=4 SV=1	[more]
A0A0L9V7A9_PHAAN	1.1e-53	71.79	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g137600 PE=4 SV=1	[more]
A0A0S3SC87_PHAAN	1.1e-53	71.79	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G165400 PE=...	[more]

BLAST of Cp4.1LG09g05620 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27510.1	3.6e-45	60.26	ferredoxin 3	[more]
AT1G10960.1	5.6e-38	66.96	ferredoxin 1	[more]
AT1G60950.1	1.4e-36	63.33	2Fe-2S ferredoxin-like superfamily protein	[more]
AT5G10000.1	5.6e-30	50.00	ferredoxin 4	[more]
AT4G14890.1	8.3e-18	41.60	2Fe-2S ferredoxin-like superfamily protein	[more]

BLAST of Cp4.1LG09g05620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209835\|gb\|KGN64931.1\|	5.2e-62	81.41	hypothetical protein Csa_1G163160 [Cucumis sativus]	[more]
gi\|659071691\|ref\|XP_008461439.1\|	9.8e-61	79.49	PREDICTED: ferredoxin, root R-B2 [Cucumis melo]	[more]
gi\|593203955\|ref\|XP_007132438.1\|	9.5e-56	72.44	hypothetical protein PHAVU_011G094400g [Phaseolus vulgaris]	[more]
gi\|950939830\|ref\|XP_014491925.1\|	1.2e-53	71.79	PREDICTED: ferredoxin [Vigna radiata var. radiata]	[more]
gi\|920708552\|gb\|KOM50549.1\|	1.5e-53	71.79	hypothetical protein LR48_Vigan08g137600 [Vigna angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0022900	electron transport chain

Vocabulary: **Molecular Function**
Term	Definition
GO:0051537	2 iron, 2 sulfur cluster binding
GO:0051536	iron-sulfur cluster binding
GO:0009055	electron carrier activity

Vocabulary: **INTERPRO**
Term	Definition
IPR012675	Beta-grasp_dom_sf
IPR010241	Fd_pln
IPR006058	2Fe2S_fd_BS
IPR001041	2Fe-2S_ferredoxin-type

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g05620.1	Cp4.1LG09g05620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 67..142 score: 5.7
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROFILE	PS51085	2FE2S_FER_2	coord: 62..153 score: 12
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	unknown	SSF54292	2Fe-2S ferredoxin-like	coord: 56..153 score: 3.41
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 99..107 scor
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAMs	TIGR02008	TIGR02008	coord: 60..155 score: 3.8
IPR012675	Beta-grasp domain	GENE3D	G3DSA:3.10.20.30		coord: 45..155 score: 1.1
None	No IPR available	PANTHER	PTHR19370	NADH-CYTOCHROME B5 REDUCTASE	coord: 4..155 score: 3.3
None	No IPR available	PANTHER	PTHR19370:SF127	SUBFAMILY NOT NAMED	coord: 4..155 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG09g05620	CmoCh18G006650	Cucurbita moschata (Rifu)	cmocpeB374
Cp4.1LG09g05620	Cla001097	Watermelon (97103) v1	cpewmB045
Cp4.1LG09g05620	Csa1G163160	Cucumber (Chinese Long) v2	cpecuB020
Cp4.1LG09g05620	MELO3C004712	Melon (DHL92) v3.5.1	cpemeB028
Cp4.1LG09g05620	ClCG01G012230	Watermelon (Charleston Gray)	cpewcgB029
Cp4.1LG09g05620	CSPI01G14710	Wild cucumber (PI 183967)	cpecpiB017
Cp4.1LG09g05620	MELO3C004712.2	Melon (DHL92) v3.6.1	cpemedB033
Cp4.1LG09g05620	CsaV3_1G014830	Cucumber (Chinese Long) v3	cpecucB0024
Cp4.1LG09g05620	Bhi08G000048	Wax gourd	cpewgoB0050
Cp4.1LG09g05620	CsGy1G014590	Cucumber (Gy14) v2	cgybcpeB007
Cp4.1LG09g05620	Carg26273	Silver-seed gourd	carcpeB0000

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG09g05620	Cucurbita maxima (Rimu)	cmacpeB415
Cp4.1LG09g05620	Bottle gourd (USVL1VR-Ls)	cpelsiB029
Cp4.1LG09g05620	Watermelon (Charleston Gray)	cpewcgB034
Cp4.1LG09g05620	Watermelon (97103) v1	cpewmB048
Cp4.1LG09g05620	Watermelon (97103) v1	cpewmB053