Carg22723 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22723
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Basic leucine zipper/W2 domain protein
Location	Cucurbita_argyrosperma_scaffold_230 : 341350 .. 341562 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGAGAGAAGAGCCCTGGTCTTAAGATCCTCTGGGTTTGGACTCTTGGCACCGCCGCCATTCTCGTTACGAGCGTAGCTCGGATGAGAATGAGGGATATGGAGAGTATCATCAAGTCCGATCAACAACAACAATCGATGCACCAGCAGCGACAAACGTCTTCCACCGATTCGTTTTTCGTTGGCGAAGGTGACACATCTGAGGATTAG

mRNA sequence

ATGGCGAGAGAGAAGAGCCCTGGTCTTAAGATCCTCTGGGTTTGGACTCTTGGCACCGCCGCCATTCTCGTTACGAGCGTAGCTCGGATGAGAATGAGGGATATGGAGAGTATCATCAAGTCCGATCAACAACAACAATCGATGCACCAGCAGCGACAAACGTCTTCCACCGATTCGTTTTTCGTTGGCGAAGGTGACACATCTGAGGATTAG

Coding sequence (CDS)

ATGGCGAGAGAGAAGAGCCCTGGTCTTAAGATCCTCTGGGTTTGGACTCTTGGCACCGCCGCCATTCTCGTTACGAGCGTAGCTCGGATGAGAATGAGGGATATGGAGAGTATCATCAAGTCCGATCAACAACAACAATCGATGCACCAGCAGCGACAAACGTCTTCCACCGATTCGTTTTTCGTTGGCGAAGGTGACACATCTGAGGATTAG

Protein sequence

MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSFFVGEGDTSED

Homology

[Close]

BLAST of Carg22723 vs. NCBI nr
Match: XP_022933307.1 (uncharacterized protein LOC111440489 [Cucurbita moschata])

HSP 1 Score: 131.0 bits (328), Expect = 1.6e-27
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60
          MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF
Sbjct: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60

Query: 61 FVGEGDTSED 71
          FVGEG+TSE+
Sbjct: 61 FVGEGETSEN 70

[Close]

BLAST of Carg22723 vs. NCBI nr
Match: XP_022987500.1 (uncharacterized protein LOC111485045 [Cucurbita maxima])

HSP 1 Score: 97.1 bits (240), Expect = 2.6e-17
Identity = 53/69 (76.81%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60
          MAR+KSPG+KILWVWTLGTAAILVTSVAR RMRDME++I SDQQ    HQ  QTSSTDSF
Sbjct: 1  MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMINSDQQPSLHHQ--QTSSTDSF 60

Query: 61 FVGEGDTSE 70
           V EGD S+
Sbjct: 61 SVDEGDVSQ 67

[Close]

BLAST of Carg22723 vs. NCBI nr
Match: XP_023516467.1 (uncharacterized protein LOC111780326 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 97.1 bits (240), Expect = 2.6e-17
Identity = 53/69 (76.81%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60
          MAR+KSPG+KILWVWTLGTAAILVTSVAR RMRDME++I SDQQ    HQ  QTSSTDSF
Sbjct: 1  MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMINSDQQPSLHHQ--QTSSTDSF 60

Query: 61 FVGEGDTSE 70
           V EGD S+
Sbjct: 61 SVDEGDASQ 67

[Close]

BLAST of Carg22723 vs. NCBI nr
Match: XP_022149993.1 (uncharacterized protein LOC111018274 [Momordica charantia])

HSP 1 Score: 90.5 bits (223), Expect = 2.4e-15
Identity = 52/70 (74.29%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60
          MAREK+PGLKILWVWTLGTAAILVTSVARMRMRDME+II SDQQQ    Q +QT  TDS 
Sbjct: 19 MAREKNPGLKILWVWTLGTAAILVTSVARMRMRDMETIINSDQQQS---QPQQTFPTDSL 78

Query: 61 FVGEGDTSED 71
            GEG   +D
Sbjct: 79 PNGEGVIRDD 85

[Close]

BLAST of Carg22723 vs. NCBI nr
Match: XP_011660223.1 (PREDICTED: uncharacterized protein LOC105436351 [Cucumis sativus] >KGN66668.1 hypothetical protein Csa_1G656450 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 1.6e-14
Identity = 48/70 (68.57%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIK-SDQQQQSMHQQRQTSSTDS 60
          M REKSPGLKILWVWTLGTAAIL TSV RMR+RDME+ +  +  QQQS+H Q QTSSTDS
Sbjct: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTVNFNSDQQQSLHHQ-QTSSTDS 60

Query: 61 FFVGEGDTSE 70
          F + + D S+
Sbjct: 61 FSLDDADKSQ 69

[Close]

BLAST of Carg22723 vs. TAIR10
Match: AT1G06010.1 (unknown protein)

HSP 1 Score: 70.5 bits (171), Expect = 4.7e-13
Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60
          M REKSPGLKILWVWT+GTAAILVTSV R RM+DM++++  +Q+Q     Q  ++   S 
Sbjct: 1  MGREKSPGLKILWVWTIGTAAILVTSVVRTRMQDMQTMMNQNQEQAPKENQNGSAGDSSV 60

Query: 61 FVGE 65
           + E
Sbjct: 61 LMDE 64

[Close]

BLAST of Carg22723 vs. TrEMBL
Match: tr|A0A0A0LY21|A0A0A0LY21_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G656450 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.0e-14
Identity = 48/70 (68.57%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIK-SDQQQQSMHQQRQTSSTDS 60
          M REKSPGLKILWVWTLGTAAIL TSV RMR+RDME+ +  +  QQQS+H Q QTSSTDS
Sbjct: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTVNFNSDQQQSLHHQ-QTSSTDS 60

Query: 61 FFVGEGDTSE 70
          F + + D S+
Sbjct: 61 FSLDDADKSQ 69

[Close]

BLAST of Carg22723 vs. TrEMBL
Match: tr|A0A1S3B9D1|A0A1S3B9D1_CUCME (uncharacterized protein LOC103487223 OS=Cucumis melo OX=3656 GN=LOC103487223 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.4e-13
Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60
          M REKSPGLKILWVWTLGTAAIL TSV RMR+RDME+ I  +  QQ     +QTSSTDSF
Sbjct: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTINFNSDQQPSLHHQQTSSTDSF 60

Query: 61 FVGEGDTSED 71
           + +  + +D
Sbjct: 61 PIPDSFSVDD 70

[Close]

BLAST of Carg22723 vs. TrEMBL
Match: tr|A0A2C9USH9|A0A2C9USH9_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G005400 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-10
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60
          M REKSPGLKILW+WT+GTAAILVT+V R R+RDME ++ ++QQQ    QQ Q++  DS 
Sbjct: 1  MPREKSPGLKILWLWTIGTAAILVTTVVRTRLRDMEQLMNAEQQQ----QQTQSTLRDSL 58

Query: 61 FV 63
           V
Sbjct: 61 IV 58

[Close]

BLAST of Carg22723 vs. TrEMBL
Match: tr|A0A2P5C2C0|A0A2P5C2C0_9ROSA (Basic leucine zipper/W2 domain protein OS=Trema orientalis OX=63057 GN=TorRG33x02_300330 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.7e-10
Identity = 34/44 (77.27%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQ 45
          M REKSPGLKILW+WT+GTAAILVTSV R RMRDMES++ ++QQ
Sbjct: 1  MRREKSPGLKILWLWTIGTAAILVTSVVRTRMRDMESLMNAEQQ 44

[Close]

BLAST of Carg22723 vs. TrEMBL
Match: tr|A0A1J3HQP7|A0A1J3HQP7_NOCCA (Uncharacterized protein OS=Noccaea caerulescens OX=107243 GN=LC_TR5076_c0_g1_i1_g.17777 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.5e-10
Identity = 40/59 (67.80%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDS 60
          M REKSPGLKILWVWTLGTAAILVTSV R RM+DMES++    Q+Q+  Q   TS+ DS
Sbjct: 1  MGREKSPGLKILWVWTLGTAAILVTSVVRTRMQDMESMM---NQEQAPKQNHNTSAGDS 56

The following BLAST results are available for this feature:

BLAST of Carg22723 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933307.1	1.6e-27	97.14	uncharacterized protein LOC111440489 [Cucurbita moschata]	[more]
XP_022987500.1	2.6e-17	76.81	uncharacterized protein LOC111485045 [Cucurbita maxima]	[more]
XP_023516467.1	2.6e-17	76.81	uncharacterized protein LOC111780326 [Cucurbita pepo subsp. pepo]	[more]
XP_022149993.1	2.4e-15	74.29	uncharacterized protein LOC111018274 [Momordica charantia]	[more]
XP_011660223.1	1.6e-14	68.57	PREDICTED: uncharacterized protein LOC105436351 [Cucumis sativus] >KGN66668.1 hy...	[more]

BLAST of Carg22723 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G06010.1	4.7e-13	54.69	unknown protein	[more]

BLAST of Carg22723 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg22723 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LY21\|A0A0A0LY21_CUCSA	1.0e-14	68.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G656450 PE=4 SV=1	[more]
tr\|A0A1S3B9D1\|A0A1S3B9D1_CUCME	4.4e-13	62.86	uncharacterized protein LOC103487223 OS=Cucumis melo OX=3656 GN=LOC103487223 PE=...	[more]
tr\|A0A2C9USH9\|A0A2C9USH9_MANES	2.0e-10	61.29	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G005400 PE=4 SV=...	[more]
tr\|A0A2P5C2C0\|A0A2P5C2C0_9ROSA	2.7e-10	77.27	Basic leucine zipper/W2 domain protein OS=Trema orientalis OX=63057 GN=TorRG33x0...	[more]
tr\|A0A1J3HQP7\|A0A1J3HQP7_NOCCA	4.5e-10	67.80	Uncharacterized protein OS=Noccaea caerulescens OX=107243 GN=LC_TR5076_c0_g1_i1_...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22723-RA	Carg22723-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..63

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22723	Cla009548	Watermelon (97103) v1	carwmB0531
Carg22723	Csa1G656450	Cucumber (Chinese Long) v2	carcuB0565
Carg22723	MELO3C010052	Melon (DHL92) v3.5.1	carmeB0540
Carg22723	ClCG03G010640	Watermelon (Charleston Gray)	carwcgB0519
Carg22723	CSPI01G32290	Wild cucumber (PI 183967)	carcpiB0571
Carg22723	Cucsa.356670	Cucumber (Gy14) v1	carcgyB0613
Carg22723	CmaCh11G009330	Cucurbita maxima (Rimu)	carcmaB0749
Carg22723	CmaCh10G008360	Cucurbita maxima (Rimu)	carcmaB0748
Carg22723	Lsi06G006920	Bottle gourd (USVL1VR-Ls)	carlsiB485
Carg22723	Cp4.1LG18g02590	Cucurbita pepo (Zucchini)	carcpeB0757
Carg22723	Cp4.1LG00g01500	Cucurbita pepo (Zucchini)	carcpeB0756
Carg22723	CsGy1G031200	Cucumber (Gy14) v2	carcgybB0542
Carg22723	MELO3C010052.2	Melon (DHL92) v3.6.1	carmedB0545
Carg22723	CsaV3_1G044490	Cucumber (Chinese Long) v3	carcucB0573
Carg22723	Cla97C03G061250	Watermelon (97103) v2	carwmbB0560

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg22723	Carg17798	Silver-seed gourd	carcarB502

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22723	Cucurbita moschata (Rifu)	carcmoB0726
Carg22723	Cucurbita moschata (Rifu)	carcmoB0727
Carg22723	Wax gourd	carwgoB0646