MELO3C010052 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010052
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Prolow-density lipoprotein receptor-related protein 1
Location	chr2 : 11833477 .. 11834120 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTGAGAAAGGTAGGCATTTGAGTTTTGTTTGCCGAATTGAAGTTCCGACATGGTGAGAGAGAAGAGCCCCGGCTTAAAGATCCTCTGGGTTTGGACTCTTGGCACCGCCGCCATTCTCGCTACAAGCGTTGTTCGCATGAGATTGAGAGATATGGAGAACACAATCAACTTCAACTCCGATCAACAACCATCCCTTCACCACCAACAAACTTCTTCCACCGATTCCTTTCCCATTCCCGATTCGTTTTCCGTTGATGATGCTGACAAATCACAGGTTTAGAAGCTTTCGCGCCTTTTAAATTGAAATTCAGCTTAATCTAGTAATTTTTTCTTTTCGAATTTATCATCAAGGAATCTGGGTTTTCCTCAAATCCCATTTTCGGTGGAGTGTACATAATCTGTTTGATAGAATTCCTCAATGGAAAGAACTGCCATAATTTCAGTTGTAGTGAGATTGCTATTGCTTTGGATCTTTGATGTTTTAGTTTAAACGAAGTGTTTTATGTTTACTGCTACATTTACAAATCAGAAGGTCTGCCTCTAAGTTGAATTTGATGGGTGATAATGAGGCTTTATACAACAAGTGTTTGTTGAACTGTCAATTCCTCATTCTTAATGAGCTTGCAAGTGCTTTGATGCAT

mRNA sequence

AATTTGAGAAAGGTAGGCATTTGAGTTTTGTTTGCCGAATTGAAGTTCCGACATGGTGAGAGAGAAGAGCCCCGGCTTAAAGATCCTCTGGGTTTGGACTCTTGGCACCGCCGCCATTCTCGCTACAAGCGTTGTTCGCATGAGATTGAGAGATATGGAGAACACAATCAACTTCAACTCCGATCAACAACCATCCCTTCACCACCAACAAACTTCTTCCACCGATTCCTTTCCCATTCCCGATTCGTTTTCCGTTGATGATGCTGACAAATCACAGGTTTAGAAGCTTTCGCGCCTTTTAAATTGAAATTCAGCTTAATCTAGTAATTTTTTCTTTTCGAATTTATCATCAAGGAATCTGGGTTTTCCTCAAATCCCATTTTCGGTGGAGTGTACATAATCTGTTTGATAGAATTCCTCAATGGAAAGAACTGCCATAATTTCAGTTGTAGTGAGATTGCTATTGCTTTGGATCTTTGATGTTTTAGTTTAAACGAAGTGTTTTATGTTTACTGCTACATTTACAAATCAGAAGGTCTGCCTCTAAGTTGAATTTGATGGGTGATAATGAGGCTTTATACAACAAGTGTTTGTTGAACTGTCAATTCCTCATTCTTAATGAGCTTGCAAGTGCTTTGATGCAT

Coding sequence (CDS)

ATGGTGAGAGAGAAGAGCCCCGGCTTAAAGATCCTCTGGGTTTGGACTCTTGGCACCGCCGCCATTCTCGCTACAAGCGTTGTTCGCATGAGATTGAGAGATATGGAGAACACAATCAACTTCAACTCCGATCAACAACCATCCCTTCACCACCAACAAACTTCTTCCACCGATTCCTTTCCCATTCCCGATTCGTTTTCCGTTGATGATGCTGACAAATCACAGGTTTAG

Protein sequence

MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTINFNSDQQPSLHHQQTSSTDSFPIPDSFSVDDADKSQV*

Homology

[Close]

BLAST of MELO3C010052 vs. TrEMBL
Match: A0A0A0LY21_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G656450 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 6.4e-28
Identity = 67/76 (88.16%), Postives = 69/76 (90.79%), Query Frame = 1


Query: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTINFNSDQQPSLHHQQTSSTDSF 60
          MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENT+NFNSDQQ SLHHQQTSST   
Sbjct: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTVNFNSDQQQSLHHQQTSST--- 60

Query: 61 PIPDSFSVDDADKSQV 77
             DSFS+DDADKSQV
Sbjct: 61 ---DSFSLDDADKSQV 70

[Close]

BLAST of MELO3C010052 vs. TrEMBL
Match: R0GKQ1_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10010720mg PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.8e-12
Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 1


Query: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTINFNSDQQPSLHHQQTSSTDSF 60
          M REKSPGLKILWVWT+GTAAIL TSVVR R++DM++ IN N +Q P   +Q   + DS 
Sbjct: 24 MGREKSPGLKILWVWTIGTAAILVTSVVRTRMQDMQSMINQNQEQAPK-QNQNGGAADSS 83

Query: 61 PIPDSFSVDDADK 74
           + D   + ++D+
Sbjct: 84 VLTDETILPESDR 95

[Close]

BLAST of MELO3C010052 vs. TrEMBL
Match: M5W1G1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017610mg PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.8e-12
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 1


Query: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTINFNSDQQPSLHHQQTSSTDSF 60
          M RE SPGLKILWVWTLGTAA+L TSVVR R+RDMEN +  N++QQ     Q T++TD+ 
Sbjct: 1  MARELSPGLKILWVWTLGTAAVLVTSVVRTRVRDMENLM--NAEQQQPQQQQDTTATDT- 60

Query: 61 PIPDSFSVDDADKS 75
             D+  VD + +S
Sbjct: 61 ---DTLLVDTSPQS 68

[Close]

BLAST of MELO3C010052 vs. TrEMBL
Match: D7KF99_ARALL (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_678215 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.8e-12
Identity = 38/73 (52.05%), Postives = 53/73 (72.60%), Query Frame = 1


Query: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTINFNSDQQPSLHHQQTSSTDSF 60
          M REKSPGLKILW+WT+GTAAIL TSVVR R++DM++ +N N +Q P   +Q  S+ DS 
Sbjct: 1  MGREKSPGLKILWIWTIGTAAILVTSVVRTRMQDMQSMMNQNQEQAPK-ENQNVSAGDSS 60

Query: 61 PIPDSFSVDDADK 74
           + D   + ++D+
Sbjct: 61 VLTDETVLPESDR 72

[Close]

BLAST of MELO3C010052 vs. TrEMBL
Match: Q84R19_ARATH (Putative uncharacterized protein At1g06010 OS=Arabidopsis thaliana GN=At1g06010 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 8.4e-12
Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 1


Query: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTINFNSDQQPSLHHQQTSSTDSF 60
          M REKSPGLKILWVWT+GTAAIL TSVVR R++DM+  +N N +Q P   +Q  S+ DS 
Sbjct: 1  MGREKSPGLKILWVWTIGTAAILVTSVVRTRMQDMQTMMNQNQEQAPK-ENQNGSAGDSS 60

Query: 61 PIPDSFSVDDADK 74
           + D   + ++D+
Sbjct: 61 VLMDETVLPESDR 72

[Close]

BLAST of MELO3C010052 vs. TAIR10
Match: AT1G06010.1 (AT1G06010.1 unknown protein)

HSP 1 Score: 77.4 bits (189), Expect = 4.3e-15
Identity = 39/73 (53.42%), Postives = 50/73 (68.49%), Query Frame = 1


Query: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTINFNSDQQPSLHHQQTSSTDSF 60
          M REKSPGLKILWVWT+GTAAIL TSVVR R++DM+  +N N +Q P   +Q  S+ DS 
Sbjct: 1  MGREKSPGLKILWVWTIGTAAILVTSVVRTRMQDMQTMMNQNQEQAPK-ENQNGSAGDSS 60

Query: 61 PIPDSFSVDDADK 74
           + D   + ++D+
Sbjct: 61 VLMDETVLPESDR 72

[Close]

BLAST of MELO3C010052 vs. NCBI nr
Match: gi|659085942|ref|XP_008443690.1| (PREDICTED: uncharacterized protein LOC103487223 [Cucumis melo])

HSP 1 Score: 155.2 bits (391), Expect = 4.6e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1


Query: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTINFNSDQQPSLHHQQTSSTDSF 60
          MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTINFNSDQQPSLHHQQTSSTDSF
Sbjct: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTINFNSDQQPSLHHQQTSSTDSF 60

Query: 61 PIPDSFSVDDADKSQV 77
          PIPDSFSVDDADKSQV
Sbjct: 61 PIPDSFSVDDADKSQV 76

[Close]

BLAST of MELO3C010052 vs. NCBI nr
Match: gi|778664107|ref|XP_011660223.1| (PREDICTED: uncharacterized protein LOC105436351 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 9.2e-28
Identity = 67/76 (88.16%), Postives = 69/76 (90.79%), Query Frame = 1


Query: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTINFNSDQQPSLHHQQTSSTDSF 60
          MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENT+NFNSDQQ SLHHQQTSST   
Sbjct: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTVNFNSDQQQSLHHQQTSST--- 60

Query: 61 PIPDSFSVDDADKSQV 77
             DSFS+DDADKSQV
Sbjct: 61 ---DSFSLDDADKSQV 70

[Close]

BLAST of MELO3C010052 vs. NCBI nr
Match: gi|727570384|ref|XP_010457712.1| (PREDICTED: uncharacterized protein LOC104739148 isoform X2 [Camelina sativa])

HSP 1 Score: 79.0 bits (193), Expect = 4.1e-12
Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 1


Query: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTINFNSDQQPSLHHQQTSSTDSF 60
          M REKSPGLKILWVWT+GTAAIL TSVVR R++DM+  +N N +Q P   +Q  S+ DS 
Sbjct: 27 MGREKSPGLKILWVWTIGTAAILVTSVVRTRMQDMQTMMNQNQEQAPK-RNQNASAGDSS 86

Query: 61 PIPDSFSVDDADK 74
           + D   + ++D+
Sbjct: 87 ALTDETILPESDR 98

[Close]

BLAST of MELO3C010052 vs. NCBI nr
Match: gi|565491638|ref|XP_006303458.1| (hypothetical protein CARUB_v10010720mg, partial [Capsella rubella])

HSP 1 Score: 78.6 bits (192), Expect = 5.4e-12
Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 1


Query: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTINFNSDQQPSLHHQQTSSTDSF 60
          M REKSPGLKILWVWT+GTAAIL TSVVR R++DM++ IN N +Q P   +Q   + DS 
Sbjct: 24 MGREKSPGLKILWVWTIGTAAILVTSVVRTRMQDMQSMINQNQEQAPK-QNQNGGAADSS 83

Query: 61 PIPDSFSVDDADK 74
           + D   + ++D+
Sbjct: 84 VLTDETILPESDR 95

[Close]

BLAST of MELO3C010052 vs. NCBI nr
Match: gi|297843398|ref|XP_002889580.1| (predicted protein [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 78.6 bits (192), Expect = 5.4e-12
Identity = 38/73 (52.05%), Postives = 53/73 (72.60%), Query Frame = 1


Query: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTINFNSDQQPSLHHQQTSSTDSF 60
          M REKSPGLKILW+WT+GTAAIL TSVVR R++DM++ +N N +Q P   +Q  S+ DS 
Sbjct: 1  MGREKSPGLKILWIWTIGTAAILVTSVVRTRMQDMQSMMNQNQEQAPK-ENQNVSAGDSS 60

Query: 61 PIPDSFSVDDADK 74
           + D   + ++D+
Sbjct: 61 VLTDETVLPESDR 72

The following BLAST results are available for this feature:

BLAST of MELO3C010052 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY21_CUCSA	6.4e-28	88.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G656450 PE=4 SV=1	[more]
R0GKQ1_9BRAS	3.8e-12	53.42	Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10010720mg PE=4...	[more]
M5W1G1_PRUPE	3.8e-12	56.76	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017610mg PE=4 SV=1	[more]
D7KF99_ARALL	3.8e-12	52.05	Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_678215 PE=4 ...	[more]
Q84R19_ARATH	8.4e-12	53.42	Putative uncharacterized protein At1g06010 OS=Arabidopsis thaliana GN=At1g06010 ...	[more]

BLAST of MELO3C010052 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G06010.1	4.3e-15	53.42	unknown protein	[more]

BLAST of MELO3C010052 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659085942\|ref\|XP_008443690.1\|	4.6e-35	100.00	PREDICTED: uncharacterized protein LOC103487223 [Cucumis melo]	[more]
gi\|778664107\|ref\|XP_011660223.1\|	9.2e-28	88.16	PREDICTED: uncharacterized protein LOC105436351 [Cucumis sativus]	[more]
gi\|727570384\|ref\|XP_010457712.1\|	4.1e-12	53.42	PREDICTED: uncharacterized protein LOC104739148 isoform X2 [Camelina sativa]	[more]
gi\|565491638\|ref\|XP_006303458.1\|	5.4e-12	53.42	hypothetical protein CARUB_v10010720mg, partial [Capsella rubella]	[more]
gi\|297843398\|ref\|XP_002889580.1\|	5.4e-12	52.05	predicted protein [Arabidopsis lyrata subsp. lyrata]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU53703	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010052T1	MELO3C010052T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU53703	MU53703	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C010052	Csa1G656450	Cucumber (Chinese Long) v2	cumeB043
MELO3C010052	Cla009548	Watermelon (97103) v1	mewmB263
MELO3C010052	ClCG03G010640	Watermelon (Charleston Gray)	mewcgB239
MELO3C010052	Cla97C03G061250	Watermelon (97103) v2	mewmbB244
MELO3C010052	CSPI01G32290	Wild cucumber (PI 183967)	cpimeB044
MELO3C010052	Cucsa.356670	Cucumber (Gy14) v1	cgymeB574
MELO3C010052	CmaCh11G009330	Cucurbita maxima (Rimu)	cmameB107
MELO3C010052	CmaCh10G008360	Cucurbita maxima (Rimu)	cmameB069
MELO3C010052	Lsi06G006920	Bottle gourd (USVL1VR-Ls)	lsimeB398
MELO3C010052	Cp4.1LG18g02590	Cucurbita pepo (Zucchini)	cpemeB332
MELO3C010052	Cp4.1LG00g01500	Cucurbita pepo (Zucchini)	cpemeB007
MELO3C010052	CsGy1G031200	Cucumber (Gy14) v2	cgybmeB040
MELO3C010052	Carg22723	Silver-seed gourd	carmeB0540
MELO3C010052	Carg17798	Silver-seed gourd	carmeB0946
MELO3C010052	CsaV3_1G044490	Cucumber (Chinese Long) v3	cucmeB044

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C010052	Wax gourd	mewgoB300
MELO3C010052	Wax gourd	mewgoB315
MELO3C010052	Cucurbita moschata (Rifu)	cmomeB061
MELO3C010052	Cucurbita moschata (Rifu)	cmomeB099