Cla009548 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla009548
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr3 : 15793284 .. 15793508 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGAGAGAAGAGCCCTGGCTTAAAGATCCTCTGGGTTTGGACTCTTGGCACCGCCGCCATTCTCGTGACAACCGTTGCTCGGATGAGAATGAGGGATATGGAGAACATAACCAACTCCGATCAACAACCATCGCACAACCACCAACAAACGTCTTCCACCGATTCCTTTCCCATTACCGATTCGTTTTCCGTCGATGAAGGAGACGCATCACAGGTTTAG

mRNA sequence

ATGGTGAGAGAGAAGAGCCCTGGCTTAAAGATCCTCTGGGTTTGGACTCTTGGCACCGCCGCCATTCTCGTGACAACCGTTGCTCGGATGAGAATGAGGGATATGGAGAACATAACCAACTCCGATCAACAACCATCGCACAACCACCAACAAACGTCTTCCACCGATTCCTTTCCCATTACCGATTCGTTTTCCGTCGATGAAGGAGACGCATCACAGGTTTAG

Coding sequence (CDS)

ATGGTGAGAGAGAAGAGCCCTGGCTTAAAGATCCTCTGGGTTTGGACTCTTGGCACCGCCGCCATTCTCGTGACAACCGTTGCTCGGATGAGAATGAGGGATATGGAGAACATAACCAACTCCGATCAACAACCATCGCACAACCACCAACAAACGTCTTCCACCGATTCCTTTCCCATTACCGATTCGTTTTCCGTCGATGAAGGAGACGCATCACAGGTTTAG

Protein sequence

MVREKSPGLKILWVWTLGTAAILVTTVARMRMRDMENITNSDQQPSHNHQQTSSTDSFPITDSFSVDEGDASQV

Homology

[Close]

BLAST of Cla009548 vs. TrEMBL
Match: A0A0A0LY21_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G656450 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.1e-19
Identity = 55/76 (72.37%), Postives = 60/76 (78.95%), Query Frame = 1


Query: 1  MVREKSPGLKILWVWTLGTAAILVTTVARMRMRDMENIT--NSDQQPSHNHQQTSSTDSF 60
          MVREKSPGLKILWVWTLGTAAIL T+V RMR+RDMEN    NSDQQ S +HQQTSS    
Sbjct: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTVNFNSDQQQSLHHQQTSS---- 60

Query: 61 PITDSFSVDEGDASQV 75
            TDSFS+D+ D SQV
Sbjct: 61 --TDSFSLDDADKSQV 70

[Close]

BLAST of Cla009548 vs. TrEMBL
Match: M5W1G1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017610mg PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 8.6e-14
Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = 1


Query: 1  MVREKSPGLKILWVWTLGTAAILVTTVARMRMRDMENITNSDQQPSHNHQQTSSTDSFPI 60
          M RE SPGLKILWVWTLGTAA+LVT+V R R+RDMEN+ N++QQ     Q T++TD    
Sbjct: 1  MARELSPGLKILWVWTLGTAAVLVTSVVRTRVRDMENLMNAEQQQPQQQQDTTATD---- 60

Query: 61 TDSFSVDEGDAS 73
          TD+  VD    S
Sbjct: 61 TDTLLVDTSPQS 68

[Close]

BLAST of Cla009548 vs. TrEMBL
Match: V4VCU2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033256mg PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.6e-12
Identity = 41/74 (55.41%), Postives = 50/74 (67.57%), Query Frame = 1


Query: 1  MVREKSPGLKILWVWTLGTAAILVTTVARMRMRDMENITNSDQQPSHNHQQTSSTDSFPI 60
          M RE SPGLKILWVWT+GTAAILVT V R R+RDME + NS++Q     QQ++  DS  +
Sbjct: 1  MARETSPGLKILWVWTIGTAAILVTNVVRTRVRDMEQVMNSEKQ----EQQSTLDDSVLV 60

Query: 61 TDSFSVDEGDASQV 75
            S   DEG   +V
Sbjct: 61 DTSPETDEGIIKEV 70

[Close]

BLAST of Cla009548 vs. TrEMBL
Match: A0A067DZU2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035903mg PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.2e-12
Identity = 41/74 (55.41%), Postives = 49/74 (66.22%), Query Frame = 1


Query: 1  MVREKSPGLKILWVWTLGTAAILVTTVARMRMRDMENITNSDQQPSHNHQQTSSTDSFPI 60
          M RE SPGLKILWVWT+GTAAILVT V R R+RDME + NS++Q     QQ +  DS  +
Sbjct: 1  MARETSPGLKILWVWTIGTAAILVTNVVRTRVRDMEQVMNSEKQ----EQQRTLDDSVLV 60

Query: 61 TDSFSVDEGDASQV 75
            S   DEG   +V
Sbjct: 61 DTSPETDEGIIKEV 70

[Close]

BLAST of Cla009548 vs. TrEMBL
Match: D7KF99_ARALL (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_678215 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.2e-12
Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = 1


Query: 1  MVREKSPGLKILWVWTLGTAAILVTTVARMRMRDMENITNSDQ-QPSHNHQQTSSTDSFP 60
          M REKSPGLKILW+WT+GTAAILVT+V R RM+DM+++ N +Q Q    +Q  S+ DS  
Sbjct: 1  MGREKSPGLKILWIWTIGTAAILVTSVVRTRMQDMQSMMNQNQEQAPKENQNVSAGDSSV 60

Query: 61 ITDSFSVDEGD 71
          +TD   + E D
Sbjct: 61 LTDETVLPESD 71

[Close]

BLAST of Cla009548 vs. NCBI nr
Match: gi|659085942|ref|XP_008443690.1| (PREDICTED: uncharacterized protein LOC103487223 [Cucumis melo])

HSP 1 Score: 122.5 bits (306), Expect = 3.1e-25
Identity = 62/76 (81.58%), Postives = 66/76 (86.84%), Query Frame = 1


Query: 1  MVREKSPGLKILWVWTLGTAAILVTTVARMRMRDMENIT--NSDQQPSHNHQQTSSTDSF 60
          MVREKSPGLKILWVWTLGTAAIL T+V RMR+RDMEN    NSDQQPS +HQQTSSTDSF
Sbjct: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTINFNSDQQPSLHHQQTSSTDSF 60

Query: 61 PITDSFSVDEGDASQV 75
          PI DSFSVD+ D SQV
Sbjct: 61 PIPDSFSVDDADKSQV 76

[Close]

BLAST of Cla009548 vs. NCBI nr
Match: gi|778664107|ref|XP_011660223.1| (PREDICTED: uncharacterized protein LOC105436351 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 4.4e-19
Identity = 55/76 (72.37%), Postives = 60/76 (78.95%), Query Frame = 1


Query: 1  MVREKSPGLKILWVWTLGTAAILVTTVARMRMRDMENIT--NSDQQPSHNHQQTSSTDSF 60
          MVREKSPGLKILWVWTLGTAAIL T+V RMR+RDMEN    NSDQQ S +HQQTSS    
Sbjct: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTVNFNSDQQQSLHHQQTSS---- 60

Query: 61 PITDSFSVDEGDASQV 75
            TDSFS+D+ D SQV
Sbjct: 61 --TDSFSLDDADKSQV 70

[Close]

BLAST of Cla009548 vs. NCBI nr
Match: gi|595831807|ref|XP_007206345.1| (hypothetical protein PRUPE_ppa017610mg [Prunus persica])

HSP 1 Score: 84.0 bits (206), Expect = 1.2e-13
Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = 1


Query: 1  MVREKSPGLKILWVWTLGTAAILVTTVARMRMRDMENITNSDQQPSHNHQQTSSTDSFPI 60
          M RE SPGLKILWVWTLGTAA+LVT+V R R+RDMEN+ N++QQ     Q T++TD    
Sbjct: 1  MARELSPGLKILWVWTLGTAAVLVTSVVRTRVRDMENLMNAEQQQPQQQQDTTATD---- 60

Query: 61 TDSFSVDEGDAS 73
          TD+  VD    S
Sbjct: 61 TDTLLVDTSPQS 68

[Close]

BLAST of Cla009548 vs. NCBI nr
Match: gi|645223065|ref|XP_008218451.1| (PREDICTED: uncharacterized protein LOC103318797 [Prunus mume])

HSP 1 Score: 78.6 bits (192), Expect = 5.2e-12
Identity = 39/72 (54.17%), Postives = 49/72 (68.06%), Query Frame = 1


Query: 1  MVREKSPGLKILWVWTLGTAAILVTTVARMRMRDMENITNSDQQPSHNHQQTSSTDSFPI 60
          M RE SPGLKILWVWTLGTAA+LVT+V R R+RDMEN+  ++QQ     Q  ++TD    
Sbjct: 1  MARELSPGLKILWVWTLGTAAVLVTSVVRTRVRDMENLMKAEQQQQQQQQHNTATD---- 60

Query: 61 TDSFSVDEGDAS 73
          T++  VD    S
Sbjct: 61 TETLLVDTSPQS 68

[Close]

BLAST of Cla009548 vs. NCBI nr
Match: gi|567888784|ref|XP_006436914.1| (hypothetical protein CICLE_v10033256mg [Citrus clementina])

HSP 1 Score: 78.6 bits (192), Expect = 5.2e-12
Identity = 41/74 (55.41%), Postives = 50/74 (67.57%), Query Frame = 1


Query: 1  MVREKSPGLKILWVWTLGTAAILVTTVARMRMRDMENITNSDQQPSHNHQQTSSTDSFPI 60
          M RE SPGLKILWVWT+GTAAILVT V R R+RDME + NS++Q     QQ++  DS  +
Sbjct: 1  MARETSPGLKILWVWTIGTAAILVTNVVRTRVRDMEQVMNSEKQ----EQQSTLDDSVLV 60

Query: 61 TDSFSVDEGDASQV 75
            S   DEG   +V
Sbjct: 61 DTSPETDEGIIKEV 70

The following BLAST results are available for this feature:

BLAST of Cla009548 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY21_CUCSA	3.1e-19	72.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G656450 PE=4 SV=1	[more]
M5W1G1_PRUPE	8.6e-14	58.33	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017610mg PE=4 SV=1	[more]
V4VCU2_9ROSI	3.6e-12	55.41	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033256mg PE=4 SV=1	[more]
A0A067DZU2_CITSI	6.2e-12	55.41	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035903mg PE=4 SV=1	[more]
D7KF99_ARALL	6.2e-12	54.93	Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_678215 PE=4 ...	[more]

BLAST of Cla009548 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659085942\|ref\|XP_008443690.1\|	3.1e-25	81.58	PREDICTED: uncharacterized protein LOC103487223 [Cucumis melo]	[more]
gi\|778664107\|ref\|XP_011660223.1\|	4.4e-19	72.37	PREDICTED: uncharacterized protein LOC105436351 [Cucumis sativus]	[more]
gi\|595831807\|ref\|XP_007206345.1\|	1.2e-13	58.33	hypothetical protein PRUPE_ppa017610mg [Prunus persica]	[more]
gi\|645223065\|ref\|XP_008218451.1\|	5.2e-12	54.17	PREDICTED: uncharacterized protein LOC103318797 [Prunus mume]	[more]
gi\|567888784\|ref\|XP_006436914.1\|	5.2e-12	55.41	hypothetical protein CICLE_v10033256mg [Citrus clementina]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU14252	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU20284	watermelon EST collection version 2.0	transcribed_cluster
WMU21360	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU25882	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU27002	watermelon EST collection version 2.0	transcribed_cluster
WMU36330	watermelon EST collection version 2.0	transcribed_cluster
WMU55631	watermelon EST collection version 2.0	transcribed_cluster
WMU66430	watermelon EST collection version 2.0	transcribed_cluster
WMU72385	watermelon EST collection version 2.0	transcribed_cluster
WMU73256	watermelon EST collection version 2.0	transcribed_cluster
WMU73331	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla009548	Cla009548.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU14252	WMU14252	transcribed_cluster
WMU36330	WMU36330	transcribed_cluster
WMU25882	WMU25882	transcribed_cluster
WMU27002	WMU27002	transcribed_cluster
WMU72385	WMU72385	transcribed_cluster
WMU21360	WMU21360	transcribed_cluster
WMU73256	WMU73256	transcribed_cluster
WMU20284	WMU20284	transcribed_cluster
WMU66430	WMU66430	transcribed_cluster
WMU73331	WMU73331	transcribed_cluster
WMU55631	WMU55631	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla009548	Cla97C03G061250	Watermelon (97103) v2	wmwmbB126
Cla009548	Csa1G656450	Cucumber (Chinese Long) v2	cuwmB011
Cla009548	MELO3C010052	Melon (DHL92) v3.5.1	mewmB263
Cla009548	ClCG03G010640	Watermelon (Charleston Gray)	wcgwmB225
Cla009548	CSPI01G32290	Wild cucumber (PI 183967)	cpiwmB013
Cla009548	Cucsa.356670	Cucumber (Gy14) v1	cgywmB638
Cla009548	CmaCh11G009330	Cucurbita maxima (Rimu)	cmawmB093
Cla009548	CmaCh10G008360	Cucurbita maxima (Rimu)	cmawmB051
Cla009548	Lsi06G006920	Bottle gourd (USVL1VR-Ls)	lsiwmB391
Cla009548	Cp4.1LG00g01500	Cucurbita pepo (Zucchini)	cpewmB006
Cla009548	Cp4.1LG18g02590	Cucurbita pepo (Zucchini)	cpewmB350
Cla009548	CsGy1G031200	Cucumber (Gy14) v2	cgybwmB013
Cla009548	MELO3C010052.2	Melon (DHL92) v3.6.1	medwmB254
Cla009548	Carg22723	Silver-seed gourd	carwmB0531
Cla009548	Carg17798	Silver-seed gourd	carwmB0970
Cla009548	CsaV3_1G044490	Cucumber (Chinese Long) v3	cucwmB016

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla009548	Wax gourd	wgowmB655
Cla009548	Wax gourd	wgowmB661
Cla009548	Cucurbita moschata (Rifu)	cmowmB043
Cla009548	Cucurbita moschata (Rifu)	cmowmB084