ClCG03G010640 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G010640
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr03 : 19297258 .. 19300367 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATGGCAACGATTGACGATTTCATAAACCTAGGCTTTTGAGTTTTGGCGGCCCAAGTGAAGTTCCGACATGGTGAGAGAGAAGAGCCCTGGCTTAAAGATCCTCTGGGTTTGGACTCTTGGCACCGCCGCCATTCTCGTGACAACCGTTGCTCGGATGAGAATGAGGGATATGGAGAACATAACCAACTCCGATCAACAACCATCGCACAACCACCAACAAACGTCTTCCACCGATTCCTTTCCCATTACCGATTCGTTTTCCGTCGATGAAGGAGACGCATCACAGGTTTAGAAGCTTTCGCGCCTTTGAAATTCAGCTTAAACTAGTAATTTTTCTTTTCCAATTTAGCACTGGGAATCTGGGTTTTCGTCAAATCTCATTTTCGGTCGACTGTACATAATGTGTTTGATAAAATTCCTGAATGGAAGGAACTGCCATATTTTCACTCGTAATGAGCTTGCACTTGCTTTGGATCTTTGATGTGTCAGTTTTAATGAAGTGTTTTATGTTTGCTGCTGCATTTGCCTGGATGTATAAATTAGAAGGTCTGCCTCTTAGTTGAATTTGGTAGGTAATGAATGAGACAGTTCCTTAGGATGGGATTCATGTTTCATTTTTCAACGGCACTTTGTTTTCAGTAACCCTCTTTCTAAAGTTTTGTGTGGATCCTTTCAAAGTCCTTATTTAGTTTCTTATTGACCTGGTGCTCCACTCCTTCCAATTCTCATAGAAACTTTTGTTGGTCAAATAGTTTTGTGTGGTTTTGAAATTCACTAAAGTGGGGTAGTTTTTGTCTAATATTAGAACATGTATCACATAAAAATGTGTGTTGTGAGTAAAAGGCGCAAGCCAAAAATGATAACAAAATGAAAATAAAATAAAATAAAATAAAATAAATCAATGATCTTAACAACGAATGCTAGATTGTTCCATTTAGATTAATTTCAGTCCGTTTGGTTAGCTTTGTTTTCAAAAAATCATCTCATTGGTGTTTTATTTTTCCTAAATGAATAGATTGATTTATGGGAAGTCTTTATTTTGGTATGTTGCTGAGGATGCAAATGTTGTTCACTATGAGCACGAGTTGAGGTTGCACAACTTGGCTCTTTTATAAGCCTTAAGATCAAGTTGAATGCCTATATGATTATGTTCCTCCTTTGCTTGGTGATGAAACTCCAGGAGAGTAATAAAAAAGCTCTAATAGGTTGGAACCAGAATTATTACGTTCATGAAATGTCTGATATTTTAGGTACAGATTGCAATGGATTTGATGGTATGCACATATCGAACTTATATTTTACGATGTTCTTGAATAGGATCTGTCTTCTTAACAACAAATTCGCTTCCTACATTCTTTTGAATGTCAAACACAAAACTGTTGTCTTGTGTAATTACTGCAAATGATAGCATGTTGAAAGGCATTGATGCCTTTTGGCTTATATGCAAGGGATTCATCATCCACGAGAATTCAAAAGTTGAAAAGACAATAGGAATGACAAGCAATGCTTATATGTACCACATATTCTCGAAGGATTAACTTGTATAATCATTTGATGTTGTTTACCAGATATGTTGCTATAATCAGCATATCATTTAATTTTATGTTGGTTTGGGATGAATTTCCAGAATGTTATCTCGCTGAGCATTCCACCCATGTAGAAATATGTTGGAGAGGTTTATTAAAACACTATTGTCAATTGAACTTTCTGCTTTTGTAGTTAACTGATGATTGATAGATTTGGAAACGCAGATGTTATGCTGGCTTAAGAAACTTTGACCATCAATTAGGGATTTAATTGTATAGTAATTATGTGTTTACAGAAACAAAATACTGTTTTTAGTTGTCTACCAACAACTTGAAATGAATAATGTGCATGAGACTGAAGTTGTTATACAGTTGACTGATAGATGTTACATTCACCCTTTAGGAGTAGTGGACGACATCTTATTAAAATTTTGTCGATCTTCGTACACATGTACTTAGGTGGTCTCGACGCATTGACTGTTATAATATGTAAGGAGCTGTCATCTGAACACGAAGAAAATCTGGTTCAAACATTGAAAGGAGTACAAGTTGGCCATCAAGTGAATATTGGTTGACATCAAAAGTATCATTCCAGCCTTTTGCATGTACATGATCTTGTTGGAGGATGTAAAAACTTCCAGCTCGCCTTAATGGCGATTGAACCCAACCATGAAAAGAGTAGTCATGAAAGAGATTTTAAAGCTTTTTGATGTAGAACAATGAGTCTGGGTTGGAGAATTGTTTCAATTTTAGGAAGCTGAATGGTTAAGCATTGGCTGGTTTTTTTTTTTTTTTTTTTTTTCTTCTTCTTCTTCTTCTTCTTCTATTTAAGCTGAATGGTTAAGCATTGGCTGGTTTTTTTTTTTTTTTTTTTCTTCTTCTTCTTCTTCTTCTTCTATTTAAGCTGAATGGTTAAGCATTGGCTGGTTTTTTTTTTCAAGCAGGCAAGTGAGTGGTTTTTCCTTGGTCCTCCTGTGATATTGGAATCTGATAAAAACTTGAAAAACCATAAAAAAAGAAGTTTTCTAGCCAATTGCTAAACCATTTGATCAATAAACAGGGAGAAATGGTATTTTCTAGTTACATTATTTAGCTTCTTTGAAATCAATACACATTCTCCAACCATCCTAAACTTGCATGAGTACTAACTCATTGTTCTAGTTTCGAACTACAATCATGCCAATTTGTTTTAGGAATGTGTATAGGACTTGCCCATTTATTGTGGGATGGATAATACGTACATCGTGAAGTTTGGAAATCTCTTTCTTGACCACTTCCTTTATGGTTGGGTTTAATTTTCTTTGAGGCTCTTGGAAGGTGTTGTATTTGCCTCCAACAAGATCGTGTGCTTGCATAAAGTTGGATGGATACCTTTGATTGTTGGCCATGTCCACATTGTGCATGCACAAAATTAGATTGATACGTTGGATGTTGGTCCATGTCCATAACATTAACAAGCGCACGTGTTGAAGTAATAAATATCTCGGTCGCACCAGGCATTGTCCATGGAGGTTGGATTATAATATTTACTAGATATTAATTACTTGTTGATTATATATAGGCAAATGGCAATGATCTTGAG

mRNA sequence

AAATGGCAACGATTGACGATTTCATAAACCTAGGCTTTTGAGTTTTGGCGGCCCAAGTGAAGTTCCGACATGGTGAGAGAGAAGAGCCCTGGCTTAAAGATCCTCTGGGTTTGGACTCTTGGCACCGCCGCCATTCTCGTGACAACCGTTGCTCGGATGAGAATGAGGGATATGGAGAACATAACCAACTCCGATCAACAACCATCGCACAACCACCAACAAACGTCTTCCACCGATTCCTTTCCCATTACCGATTCGTTTTCCGTCGATGAAGGAGACGCATCACAGGCAAATGGCAATGATCTTGAG

Coding sequence (CDS)

ATGGTGAGAGAGAAGAGCCCTGGCTTAAAGATCCTCTGGGTTTGGACTCTTGGCACCGCCGCCATTCTCGTGACAACCGTTGCTCGGATGAGAATGAGGGATATGGAGAACATAACCAACTCCGATCAACAACCATCGCACAACCACCAACAAACGTCTTCCACCGATTCCTTTCCCATTACCGATTCGTTTTCCGTCGATGAAGGAGACGCATCACAGGCAAATGGCAATGATCTTGAG

Protein sequence

MVREKSPGLKILWVWTLGTAAILVTTVARMRMRDMENITNSDQQPSHNHQQTSSTDSFPITDSFSVDEGDASQANGNDLE

Homology

[Close]

BLAST of ClCG03G010640 vs. TrEMBL
Match: A0A0A0LY21_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G656450 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 9.6e-19
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = 1


Query: 1  MVREKSPGLKILWVWTLGTAAILVTTVARMRMRDMENIT--NSDQQPSHNHQQTSSTDSF 60
          MVREKSPGLKILWVWTLGTAAIL T+V RMR+RDMEN    NSDQQ S +HQQTSS    
Sbjct: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTVNFNSDQQQSLHHQQTSS---- 60

Query: 61 PITDSFSVDEGDASQ 74
            TDSFS+D+ D SQ
Sbjct: 61 --TDSFSLDDADKSQ 69

[Close]

BLAST of ClCG03G010640 vs. TrEMBL
Match: M5W1G1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017610mg PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 9.3e-14
Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = 1


Query: 1  MVREKSPGLKILWVWTLGTAAILVTTVARMRMRDMENITNSDQQPSHNHQQTSSTDSFPI 60
          M RE SPGLKILWVWTLGTAA+LVT+V R R+RDMEN+ N++QQ     Q T++TD    
Sbjct: 1  MARELSPGLKILWVWTLGTAAVLVTSVVRTRVRDMENLMNAEQQQPQQQQDTTATD---- 60

Query: 61 TDSFSVDEGDAS 73
          TD+  VD    S
Sbjct: 61 TDTLLVDTSPQS 68

[Close]

BLAST of ClCG03G010640 vs. TrEMBL
Match: A0A067JSL2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18030 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.7e-12
Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = 1


Query: 1  MVREKSPGLKILWVWTLGTAAILVTTVARMRMRDMENITNSDQQPSHNHQQTSSTDSFPI 60
          M REKSPGLKILW+WT+GTAAILVT+V R R+RDME   N++QQP     ++S +DS  +
Sbjct: 1  MPREKSPGLKILWLWTIGTAAILVTSVVRTRLRDMEQQMNAEQQP-----KSSLSDSIIV 60

Query: 61 TDSFSVDEG 70
           +S +  EG
Sbjct: 61 DNSLASQEG 64

[Close]

BLAST of ClCG03G010640 vs. TrEMBL
Match: V4VCU2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033256mg PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.7e-12
Identity = 40/69 (57.97%), Postives = 48/69 (69.57%), Query Frame = 1


Query: 1  MVREKSPGLKILWVWTLGTAAILVTTVARMRMRDMENITNSDQQPSHNHQQTSSTDSFPI 60
          M RE SPGLKILWVWT+GTAAILVT V R R+RDME + NS++Q     QQ++  DS  +
Sbjct: 1  MARETSPGLKILWVWTIGTAAILVTNVVRTRVRDMEQVMNSEKQ----EQQSTLDDSVLV 60

Query: 61 TDSFSVDEG 70
            S   DEG
Sbjct: 61 DTSPETDEG 65

[Close]

BLAST of ClCG03G010640 vs. TrEMBL
Match: D7KF99_ARALL (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_678215 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.7e-12
Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = 1


Query: 1  MVREKSPGLKILWVWTLGTAAILVTTVARMRMRDMENITNSDQ-QPSHNHQQTSSTDSFP 60
          M REKSPGLKILW+WT+GTAAILVT+V R RM+DM+++ N +Q Q    +Q  S+ DS  
Sbjct: 1  MGREKSPGLKILWIWTIGTAAILVTSVVRTRMQDMQSMMNQNQEQAPKENQNVSAGDSSV 60

Query: 61 ITDSFSVDEGD 71
          +TD   + E D
Sbjct: 61 LTDETVLPESD 71

[Close]

BLAST of ClCG03G010640 vs. TAIR10
Match: AT1G06010.1 (AT1G06010.1 unknown protein)

HSP 1 Score: 74.7 bits (182), Expect = 2.9e-14
Identity = 39/71 (54.93%), Postives = 47/71 (66.20%), Query Frame = 1


Query: 1  MVREKSPGLKILWVWTLGTAAILVTTVARMRMRDMENITNSDQ-QPSHNHQQTSSTDSFP 60
          M REKSPGLKILWVWT+GTAAILVT+V R RM+DM+ + N +Q Q    +Q  S+ DS  
Sbjct: 1  MGREKSPGLKILWVWTIGTAAILVTSVVRTRMQDMQTMMNQNQEQAPKENQNGSAGDSSV 60

Query: 61 ITDSFSVDEGD 71
          + D   + E D
Sbjct: 61 LMDETVLPESD 71

[Close]

BLAST of ClCG03G010640 vs. NCBI nr
Match: gi|659085942|ref|XP_008443690.1| (PREDICTED: uncharacterized protein LOC103487223 [Cucumis melo])

HSP 1 Score: 120.9 bits (302), Expect = 9.9e-25
Identity = 61/75 (81.33%), Postives = 65/75 (86.67%), Query Frame = 1


Query: 1  MVREKSPGLKILWVWTLGTAAILVTTVARMRMRDMENIT--NSDQQPSHNHQQTSSTDSF 60
          MVREKSPGLKILWVWTLGTAAIL T+V RMR+RDMEN    NSDQQPS +HQQTSSTDSF
Sbjct: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTINFNSDQQPSLHHQQTSSTDSF 60

Query: 61 PITDSFSVDEGDASQ 74
          PI DSFSVD+ D SQ
Sbjct: 61 PIPDSFSVDDADKSQ 75

[Close]

BLAST of ClCG03G010640 vs. NCBI nr
Match: gi|778664107|ref|XP_011660223.1| (PREDICTED: uncharacterized protein LOC105436351 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-18
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = 1


Query: 1  MVREKSPGLKILWVWTLGTAAILVTTVARMRMRDMENIT--NSDQQPSHNHQQTSSTDSF 60
          MVREKSPGLKILWVWTLGTAAIL T+V RMR+RDMEN    NSDQQ S +HQQTSS    
Sbjct: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTVNFNSDQQQSLHHQQTSS---- 60

Query: 61 PITDSFSVDEGDASQ 74
            TDSFS+D+ D SQ
Sbjct: 61 --TDSFSLDDADKSQ 69

[Close]

BLAST of ClCG03G010640 vs. NCBI nr
Match: gi|595831807|ref|XP_007206345.1| (hypothetical protein PRUPE_ppa017610mg [Prunus persica])

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-13
Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = 1


Query: 1  MVREKSPGLKILWVWTLGTAAILVTTVARMRMRDMENITNSDQQPSHNHQQTSSTDSFPI 60
          M RE SPGLKILWVWTLGTAA+LVT+V R R+RDMEN+ N++QQ     Q T++TD    
Sbjct: 1  MARELSPGLKILWVWTLGTAAVLVTSVVRTRVRDMENLMNAEQQQPQQQQDTTATD---- 60

Query: 61 TDSFSVDEGDAS 73
          TD+  VD    S
Sbjct: 61 TDTLLVDTSPQS 68

[Close]

BLAST of ClCG03G010640 vs. NCBI nr
Match: gi|645223065|ref|XP_008218451.1| (PREDICTED: uncharacterized protein LOC103318797 [Prunus mume])

HSP 1 Score: 78.6 bits (192), Expect = 5.6e-12
Identity = 39/72 (54.17%), Postives = 49/72 (68.06%), Query Frame = 1


Query: 1  MVREKSPGLKILWVWTLGTAAILVTTVARMRMRDMENITNSDQQPSHNHQQTSSTDSFPI 60
          M RE SPGLKILWVWTLGTAA+LVT+V R R+RDMEN+  ++QQ     Q  ++TD    
Sbjct: 1  MARELSPGLKILWVWTLGTAAVLVTSVVRTRVRDMENLMKAEQQQQQQQQHNTATD---- 60

Query: 61 TDSFSVDEGDAS 73
          T++  VD    S
Sbjct: 61 TETLLVDTSPQS 68

[Close]

BLAST of ClCG03G010640 vs. NCBI nr
Match: gi|657958600|ref|XP_008370827.1| (PREDICTED: uncharacterized protein LOC103434272 [Malus domestica])

HSP 1 Score: 78.2 bits (191), Expect = 7.4e-12
Identity = 40/72 (55.56%), Postives = 48/72 (66.67%), Query Frame = 1


Query: 1  MVREKSPGLKILWVWTLGTAAILVTTVARMRMRDMENITNSDQQPSHNHQQTSSTDSFPI 60
          M RE SPGLKILWVWTLGTAA+LVT+V R RMRDMEN+TN++QQ      Q    D+   
Sbjct: 1  MPRELSPGLKILWVWTLGTAAVLVTSVVRTRMRDMENLTNTEQQ-QQQQPQPQQHDTAAD 60

Query: 61 TDSFSVDEGDAS 73
          T++   D    S
Sbjct: 61 TETLMADTSTQS 71

The following BLAST results are available for this feature:

BLAST of ClCG03G010640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY21_CUCSA	9.6e-19	72.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G656450 PE=4 SV=1	[more]
M5W1G1_PRUPE	9.3e-14	58.33	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017610mg PE=4 SV=1	[more]
A0A067JSL2_JATCU	6.7e-12	56.52	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18030 PE=4 SV=1	[more]
V4VCU2_9ROSI	6.7e-12	57.97	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033256mg PE=4 SV=1	[more]
D7KF99_ARALL	6.7e-12	54.93	Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_678215 PE=4 ...	[more]

BLAST of ClCG03G010640 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G06010.1	2.9e-14	54.93	unknown protein	[more]

BLAST of ClCG03G010640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659085942\|ref\|XP_008443690.1\|	9.9e-25	81.33	PREDICTED: uncharacterized protein LOC103487223 [Cucumis melo]	[more]
gi\|778664107\|ref\|XP_011660223.1\|	1.4e-18	72.00	PREDICTED: uncharacterized protein LOC105436351 [Cucumis sativus]	[more]
gi\|595831807\|ref\|XP_007206345.1\|	1.3e-13	58.33	hypothetical protein PRUPE_ppa017610mg [Prunus persica]	[more]
gi\|645223065\|ref\|XP_008218451.1\|	5.6e-12	54.17	PREDICTED: uncharacterized protein LOC103318797 [Prunus mume]	[more]
gi\|657958600\|ref\|XP_008370827.1\|	7.4e-12	55.56	PREDICTED: uncharacterized protein LOC103434272 [Malus domestica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G010640.1	ClCG03G010640.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG03G010640	Csa1G656450	Cucumber (Chinese Long) v2	cuwcgB038
ClCG03G010640	MELO3C010052	Melon (DHL92) v3.5.1	mewcgB239
ClCG03G010640	Cla009548	Watermelon (97103) v1	wcgwmB225
ClCG03G010640	Cla97C03G061250	Watermelon (97103) v2	wcgwmbB186
ClCG03G010640	CSPI01G32290	Wild cucumber (PI 183967)	cpiwcgB041
ClCG03G010640	Cucsa.356670	Cucumber (Gy14) v1	cgywcgB605
ClCG03G010640	CmaCh11G009330	Cucurbita maxima (Rimu)	cmawcgB108
ClCG03G010640	CmaCh10G008360	Cucurbita maxima (Rimu)	cmawcgB058
ClCG03G010640	Lsi06G006920	Bottle gourd (USVL1VR-Ls)	lsiwcgB361
ClCG03G010640	Cp4.1LG00g01500	Cucurbita pepo (Zucchini)	cpewcgB012
ClCG03G010640	Cp4.1LG18g02590	Cucurbita pepo (Zucchini)	cpewcgB322
ClCG03G010640	CsGy1G031200	Cucumber (Gy14) v2	cgybwcgB036
ClCG03G010640	MELO3C010052.2	Melon (DHL92) v3.6.1	medwcgB230
ClCG03G010640	Carg22723	Silver-seed gourd	carwcgB0519
ClCG03G010640	Carg17798	Silver-seed gourd	carwcgB0945
ClCG03G010640	CsaV3_1G044490	Cucumber (Chinese Long) v3	cucwcgB041

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG03G010640	Cucurbita moschata (Rifu)	cmowcgB050
ClCG03G010640	Cucurbita moschata (Rifu)	cmowcgB098
ClCG03G010640	Wax gourd	wcgwgoB366
ClCG03G010640	Wax gourd	wcgwgoB369