CmaCh11G009330 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh11G009330
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Basic leucine zipper and W2 domain-containing protein 2
Location	Cma_Chr11 : 4903629 .. 4903841 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGAGAGAAGAGCCCTGGTCTAAAGATCCTCTGGGTTTGGACTCTTGGCACCGCCGCCATTCTCGTTACAAGCGTAGCTCGGATGAGAATGAGGGATATGGAGAGTATTATCAAGTCCGATCAACAACAATCGATGCACCAGCAGCGACAAACGACGTCTTCCACCGATTCGTTTTTCGTTGGCGAAGGTGATACATCACAGAATTAG

mRNA sequence

ATGGCGAGAGAGAAGAGCCCTGGTCTAAAGATCCTCTGGGTTTGGACTCTTGGCACCGCCGCCATTCTCGTTACAAGCGTAGCTCGGATGAGAATGAGGGATATGGAGAGTATTATCAAGTCCGATCAACAACAATCGATGCACCAGCAGCGACAAACGACGTCTTCCACCGATTCGTTTTTCGTTGGCGAAGGTGATACATCACAGAATTAG

Coding sequence (CDS)

ATGGCGAGAGAGAAGAGCCCTGGTCTAAAGATCCTCTGGGTTTGGACTCTTGGCACCGCCGCCATTCTCGTTACAAGCGTAGCTCGGATGAGAATGAGGGATATGGAGAGTATTATCAAGTCCGATCAACAACAATCGATGCACCAGCAGCGACAAACGACGTCTTCCACCGATTCGTTTTTCGTTGGCGAAGGTGATACATCACAGAATTAG

Protein sequence

MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQSMHQQRQTTSSTDSFFVGEGDTSQN

Homology

[Close]

BLAST of CmaCh11G009330 vs. TrEMBL
Match: A0A0A0LY21_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G656450 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.7e-16
Identity = 50/71 (70.42%), Postives = 57/71 (80.28%), Query Frame = 1


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESII--KSDQQQSMHQQRQTTSSTD 60
          M REKSPGLKILWVWTLGTAAIL TSV RMR+RDME+ +   SDQQQS+H Q+  TSSTD
Sbjct: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTVNFNSDQQQSLHHQQ--TSSTD 60

Query: 61 SFFVGEGDTSQ 70
          SF + + D SQ
Sbjct: 61 SFSLDDADKSQ 69

[Close]

BLAST of CmaCh11G009330 vs. TrEMBL
Match: M5W1G1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017610mg PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 6.9e-13
Identity = 43/68 (63.24%), Postives = 52/68 (76.47%), Query Frame = 1


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQSMHQQRQTTSSTDSF 60
          MARE SPGLKILWVWTLGTAA+LVTSV R R+RDME+++ ++QQQ   QQ  T + TD+ 
Sbjct: 1  MARELSPGLKILWVWTLGTAAVLVTSVVRTRVRDMENLMNAEQQQPQQQQDTTATDTDTL 60

Query: 61 FVGEGDTS 69
           V   DTS
Sbjct: 61 LV---DTS 65

[Close]

BLAST of CmaCh11G009330 vs. TrEMBL
Match: R0GKQ1_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10010720mg PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-10
Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQSMHQQRQTTSSTDSF 60
          M REKSPGLKILWVWT+GTAAILVTSV R RM+DM+S+I  +Q+Q+  Q +   ++  S 
Sbjct: 24 MGREKSPGLKILWVWTIGTAAILVTSVVRTRMQDMQSMINQNQEQAPKQNQNGGAADSSV 83

Query: 61 FVGE 65
             E
Sbjct: 84 LTDE 87

[Close]

BLAST of CmaCh11G009330 vs. TrEMBL
Match: B9I4F2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s13860g PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.2e-10
Identity = 34/56 (60.71%), Postives = 44/56 (78.57%), Query Frame = 1


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQSMHQQRQTTSS 57
          M RE SPGLKILW WT+GTAAILVTSV R R++DME ++ ++QQQ   Q++Q  S+
Sbjct: 1  MTRETSPGLKILWAWTIGTAAILVTSVVRTRLKDMEQMMNAEQQQQQEQEKQHQST 56

[Close]

BLAST of CmaCh11G009330 vs. TrEMBL
Match: D7KF99_ARALL (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_678215 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.2e-10
Identity = 34/64 (53.12%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQSMHQQRQTTSSTDSF 60
          M REKSPGLKILW+WT+GTAAILVTSV R RM+DM+S++  +Q+Q+  + +  ++   S 
Sbjct: 1  MGREKSPGLKILWIWTIGTAAILVTSVVRTRMQDMQSMMNQNQEQAPKENQNVSAGDSSV 60

Query: 61 FVGE 65
             E
Sbjct: 61 LTDE 64

[Close]

BLAST of CmaCh11G009330 vs. TAIR10
Match: AT1G06010.1 (AT1G06010.1 unknown protein)

HSP 1 Score: 70.5 bits (171), Expect = 4.7e-13
Identity = 34/64 (53.12%), Postives = 48/64 (75.00%), Query Frame = 1


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQSMHQQRQTTSSTDSF 60
          M REKSPGLKILWVWT+GTAAILVTSV R RM+DM++++  +Q+Q+  + +  ++   S 
Sbjct: 1  MGREKSPGLKILWVWTIGTAAILVTSVVRTRMQDMQTMMNQNQEQAPKENQNGSAGDSSV 60

Query: 61 FVGE 65
           + E
Sbjct: 61 LMDE 64

[Close]

BLAST of CmaCh11G009330 vs. NCBI nr
Match: gi|778664107|ref|XP_011660223.1| (PREDICTED: uncharacterized protein LOC105436351 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 9.6e-16
Identity = 50/71 (70.42%), Postives = 57/71 (80.28%), Query Frame = 1


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESII--KSDQQQSMHQQRQTTSSTD 60
          M REKSPGLKILWVWTLGTAAIL TSV RMR+RDME+ +   SDQQQS+H Q+  TSSTD
Sbjct: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTVNFNSDQQQSLHHQQ--TSSTD 60

Query: 61 SFFVGEGDTSQ 70
          SF + + D SQ
Sbjct: 61 SFSLDDADKSQ 69

[Close]

BLAST of CmaCh11G009330 vs. NCBI nr
Match: gi|659085942|ref|XP_008443690.1| (PREDICTED: uncharacterized protein LOC103487223 [Cucumis melo])

HSP 1 Score: 84.3 bits (207), Expect = 9.0e-14
Identity = 47/62 (75.81%), Postives = 51/62 (82.26%), Query Frame = 1


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESII--KSDQQQSMHQQRQTTSSTD 60
          M REKSPGLKILWVWTLGTAAIL TSV RMR+RDME+ I   SDQQ S+H Q+  TSSTD
Sbjct: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTINFNSDQQPSLHHQQ--TSSTD 60

[Close]

BLAST of CmaCh11G009330 vs. NCBI nr
Match: gi|645223065|ref|XP_008218451.1| (PREDICTED: uncharacterized protein LOC103318797 [Prunus mume])

HSP 1 Score: 82.8 bits (203), Expect = 2.6e-13
Identity = 43/68 (63.24%), Postives = 53/68 (77.94%), Query Frame = 1


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQSMHQQRQTTSSTDSF 60
          MARE SPGLKILWVWTLGTAA+LVTSV R R+RDME+++K++QQQ   QQ  T + T++ 
Sbjct: 1  MARELSPGLKILWVWTLGTAAVLVTSVVRTRVRDMENLMKAEQQQQQQQQHNTATDTETL 60

Query: 61 FVGEGDTS 69
           V   DTS
Sbjct: 61 LV---DTS 65

[Close]

BLAST of CmaCh11G009330 vs. NCBI nr
Match: gi|595831807|ref|XP_007206345.1| (hypothetical protein PRUPE_ppa017610mg [Prunus persica])

HSP 1 Score: 80.9 bits (198), Expect = 9.9e-13
Identity = 43/68 (63.24%), Postives = 52/68 (76.47%), Query Frame = 1


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQSMHQQRQTTSSTDSF 60
          MARE SPGLKILWVWTLGTAA+LVTSV R R+RDME+++ ++QQQ   QQ  T + TD+ 
Sbjct: 1  MARELSPGLKILWVWTLGTAAVLVTSVVRTRVRDMENLMNAEQQQPQQQQDTTATDTDTL 60

Query: 61 FVGEGDTS 69
           V   DTS
Sbjct: 61 LV---DTS 65

[Close]

BLAST of CmaCh11G009330 vs. NCBI nr
Match: gi|565491638|ref|XP_006303458.1| (hypothetical protein CARUB_v10010720mg, partial [Capsella rubella])

HSP 1 Score: 72.8 bits (177), Expect = 2.7e-10
Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQSMHQQRQTTSSTDSF 60
          M REKSPGLKILWVWT+GTAAILVTSV R RM+DM+S+I  +Q+Q+  Q +   ++  S 
Sbjct: 24 MGREKSPGLKILWVWTIGTAAILVTSVVRTRMQDMQSMINQNQEQAPKQNQNGGAADSSV 83

Query: 61 FVGE 65
             E
Sbjct: 84 LTDE 87

The following BLAST results are available for this feature:

BLAST of CmaCh11G009330 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh11G009330 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY21_CUCSA	6.7e-16	70.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G656450 PE=4 SV=1	[more]
M5W1G1_PRUPE	6.9e-13	63.24	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017610mg PE=4 SV=1	[more]
R0GKQ1_9BRAS	1.9e-10	57.81	Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10010720mg PE=4...	[more]
B9I4F2_POPTR	3.2e-10	60.71	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s13860g PE=4 SV=1	[more]
D7KF99_ARALL	4.2e-10	53.13	Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_678215 PE=4 ...	[more]

BLAST of CmaCh11G009330 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G06010.1	4.7e-13	53.13	unknown protein	[more]

BLAST of CmaCh11G009330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778664107\|ref\|XP_011660223.1\|	9.6e-16	70.42	PREDICTED: uncharacterized protein LOC105436351 [Cucumis sativus]	[more]
gi\|659085942\|ref\|XP_008443690.1\|	9.0e-14	75.81	PREDICTED: uncharacterized protein LOC103487223 [Cucumis melo]	[more]
gi\|645223065\|ref\|XP_008218451.1\|	2.6e-13	63.24	PREDICTED: uncharacterized protein LOC103318797 [Prunus mume]	[more]
gi\|595831807\|ref\|XP_007206345.1\|	9.9e-13	63.24	hypothetical protein PRUPE_ppa017610mg [Prunus persica]	[more]
gi\|565491638\|ref\|XP_006303458.1\|	2.7e-10	57.81	hypothetical protein CARUB_v10010720mg, partial [Capsella rubella]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G009330.1	CmaCh11G009330.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh11G009330	Cucsa.356670	Cucumber (Gy14) v1	cgycmaB0970
CmaCh11G009330	Cla009548	Watermelon (97103) v1	cmawmB093
CmaCh11G009330	Csa1G656450	Cucumber (Chinese Long) v2	cmacuB085
CmaCh11G009330	MELO3C010052	Melon (DHL92) v3.5.1	cmameB107
CmaCh11G009330	ClCG03G010640	Watermelon (Charleston Gray)	cmawcgB108
CmaCh11G009330	CSPI01G32290	Wild cucumber (PI 183967)	cmacpiB084
CmaCh11G009330	Lsi06G006920	Bottle gourd (USVL1VR-Ls)	cmalsiB128
CmaCh11G009330	Cp4.1LG00g01500	Cucurbita pepo (Zucchini)	cmacpeB103
CmaCh11G009330	Cp4.1LG18g02590	Cucurbita pepo (Zucchini)	cmacpeB126
CmaCh11G009330	MELO3C010052.2	Melon (DHL92) v3.6.1	cmamedB114
CmaCh11G009330	CsaV3_1G044490	Cucumber (Chinese Long) v3	cmacucB0099
CmaCh11G009330	Cla97C03G061250	Watermelon (97103) v2	cmawmbB111
CmaCh11G009330	CsGy1G031200	Cucumber (Gy14) v2	cgybcmaB027
CmaCh11G009330	Carg22723	Silver-seed gourd	carcmaB0749
CmaCh11G009330	Carg17798	Silver-seed gourd	carcmaB1336

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh11G009330	CmaCh10G008360	Cucurbita maxima (Rimu)	cmacmaB078

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh11G009330	Cucurbita moschata (Rifu)	cmacmoB105
CmaCh11G009330	Cucurbita moschata (Rifu)	cmacmoB112
CmaCh11G009330	Wax gourd	cmawgoB0161
CmaCh11G009330	Wax gourd	cmawgoB0166
CmaCh11G009330	Wax gourd	cmawgoB0169