Carg22723-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22723-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Basic leucine zipper/W2 domain protein
Location	Cucurbita_argyrosperma_scaffold_230 : 341350 .. 341562 (-)
Sequence length	213

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGAGAGAAGAGCCCTGGTCTTAAGATCCTCTGGGTTTGGACTCTTGGCACCGCCGCCATTCTCGTTACGAGCGTAGCTCGGATGAGAATGAGGGATATGGAGAGTATCATCAAGTCCGATCAACAACAACAATCGATGCACCAGCAGCGACAAACGTCTTCCACCGATTCGTTTTTCGTTGGCGAAGGTGACACATCTGAGGATTAG

mRNA sequence

ATGGCGAGAGAGAAGAGCCCTGGTCTTAAGATCCTCTGGGTTTGGACTCTTGGCACCGCCGCCATTCTCGTTACGAGCGTAGCTCGGATGAGAATGAGGGATATGGAGAGTATCATCAAGTCCGATCAACAACAACAATCGATGCACCAGCAGCGACAAACGTCTTCCACCGATTCGTTTTTCGTTGGCGAAGGTGACACATCTGAGGATTAG

Coding sequence (CDS)

ATGGCGAGAGAGAAGAGCCCTGGTCTTAAGATCCTCTGGGTTTGGACTCTTGGCACCGCCGCCATTCTCGTTACGAGCGTAGCTCGGATGAGAATGAGGGATATGGAGAGTATCATCAAGTCCGATCAACAACAACAATCGATGCACCAGCAGCGACAAACGTCTTCCACCGATTCGTTTTTCGTTGGCGAAGGTGACACATCTGAGGATTAG

Protein sequence

MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSFFVGEGDTSED

Homology

[Close]

BLAST of Carg22723-RA vs. NCBI nr
Match: XP_022933307.1 (uncharacterized protein LOC111440489 [Cucurbita moschata])

HSP 1 Score: 131.0 bits (328), Expect = 1.6e-27
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60
          MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF
Sbjct: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60

Query: 61 FVGEGDTSED 71
          FVGEG+TSE+
Sbjct: 61 FVGEGETSEN 70

[Close]

BLAST of Carg22723-RA vs. NCBI nr
Match: XP_022987500.1 (uncharacterized protein LOC111485045 [Cucurbita maxima])

HSP 1 Score: 97.1 bits (240), Expect = 2.6e-17
Identity = 53/69 (76.81%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60
          MAR+KSPG+KILWVWTLGTAAILVTSVAR RMRDME++I SDQQ    HQ  QTSSTDSF
Sbjct: 1  MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMINSDQQPSLHHQ--QTSSTDSF 60

Query: 61 FVGEGDTSE 70
           V EGD S+
Sbjct: 61 SVDEGDVSQ 67

[Close]

BLAST of Carg22723-RA vs. NCBI nr
Match: XP_023516467.1 (uncharacterized protein LOC111780326 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 97.1 bits (240), Expect = 2.6e-17
Identity = 53/69 (76.81%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60
          MAR+KSPG+KILWVWTLGTAAILVTSVAR RMRDME++I SDQQ    HQ  QTSSTDSF
Sbjct: 1  MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMINSDQQPSLHHQ--QTSSTDSF 60

Query: 61 FVGEGDTSE 70
           V EGD S+
Sbjct: 61 SVDEGDASQ 67

[Close]

BLAST of Carg22723-RA vs. NCBI nr
Match: XP_022149993.1 (uncharacterized protein LOC111018274 [Momordica charantia])

HSP 1 Score: 90.5 bits (223), Expect = 2.4e-15
Identity = 52/70 (74.29%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60
          MAREK+PGLKILWVWTLGTAAILVTSVARMRMRDME+II SDQQQ    Q +QT  TDS 
Sbjct: 19 MAREKNPGLKILWVWTLGTAAILVTSVARMRMRDMETIINSDQQQS---QPQQTFPTDSL 78

Query: 61 FVGEGDTSED 71
            GEG   +D
Sbjct: 79 PNGEGVIRDD 85

[Close]

BLAST of Carg22723-RA vs. NCBI nr
Match: XP_011660223.1 (PREDICTED: uncharacterized protein LOC105436351 [Cucumis sativus] >KGN66668.1 hypothetical protein Csa_1G656450 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 1.6e-14
Identity = 48/70 (68.57%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIK-SDQQQQSMHQQRQTSSTDS 60
          M REKSPGLKILWVWTLGTAAIL TSV RMR+RDME+ +  +  QQQS+H Q QTSSTDS
Sbjct: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTVNFNSDQQQSLHHQ-QTSSTDS 60

Query: 61 FFVGEGDTSE 70
          F + + D S+
Sbjct: 61 FSLDDADKSQ 69

[Close]

BLAST of Carg22723-RA vs. TAIR10
Match: AT1G06010.1 (unknown protein)

HSP 1 Score: 70.5 bits (171), Expect = 4.7e-13
Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60
          M REKSPGLKILWVWT+GTAAILVTSV R RM+DM++++  +Q+Q     Q  ++   S 
Sbjct: 1  MGREKSPGLKILWVWTIGTAAILVTSVVRTRMQDMQTMMNQNQEQAPKENQNGSAGDSSV 60

Query: 61 FVGE 65
           + E
Sbjct: 61 LMDE 64

[Close]

BLAST of Carg22723-RA vs. TrEMBL
Match: tr|A0A0A0LY21|A0A0A0LY21_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G656450 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.0e-14
Identity = 48/70 (68.57%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIK-SDQQQQSMHQQRQTSSTDS 60
          M REKSPGLKILWVWTLGTAAIL TSV RMR+RDME+ +  +  QQQS+H Q QTSSTDS
Sbjct: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTVNFNSDQQQSLHHQ-QTSSTDS 60

Query: 61 FFVGEGDTSE 70
          F + + D S+
Sbjct: 61 FSLDDADKSQ 69

[Close]

BLAST of Carg22723-RA vs. TrEMBL
Match: tr|A0A1S3B9D1|A0A1S3B9D1_CUCME (uncharacterized protein LOC103487223 OS=Cucumis melo OX=3656 GN=LOC103487223 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.4e-13
Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60
          M REKSPGLKILWVWTLGTAAIL TSV RMR+RDME+ I  +  QQ     +QTSSTDSF
Sbjct: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTINFNSDQQPSLHHQQTSSTDSF 60

Query: 61 FVGEGDTSED 71
           + +  + +D
Sbjct: 61 PIPDSFSVDD 70

[Close]

BLAST of Carg22723-RA vs. TrEMBL
Match: tr|A0A2C9USH9|A0A2C9USH9_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G005400 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-10
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60
          M REKSPGLKILW+WT+GTAAILVT+V R R+RDME ++ ++QQQ    QQ Q++  DS 
Sbjct: 1  MPREKSPGLKILWLWTIGTAAILVTTVVRTRLRDMEQLMNAEQQQ----QQTQSTLRDSL 58

Query: 61 FV 63
           V
Sbjct: 61 IV 58

[Close]

BLAST of Carg22723-RA vs. TrEMBL
Match: tr|A0A2P5C2C0|A0A2P5C2C0_9ROSA (Basic leucine zipper/W2 domain protein OS=Trema orientalis OX=63057 GN=TorRG33x02_300330 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.7e-10
Identity = 34/44 (77.27%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQ 45
          M REKSPGLKILW+WT+GTAAILVTSV R RMRDMES++ ++QQ
Sbjct: 1  MRREKSPGLKILWLWTIGTAAILVTSVVRTRMRDMESLMNAEQQ 44

[Close]

BLAST of Carg22723-RA vs. TrEMBL
Match: tr|A0A1J3HQP7|A0A1J3HQP7_NOCCA (Uncharacterized protein OS=Noccaea caerulescens OX=107243 GN=LC_TR5076_c0_g1_i1_g.17777 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.5e-10
Identity = 40/59 (67.80%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDS 60
          M REKSPGLKILWVWTLGTAAILVTSV R RM+DMES++    Q+Q+  Q   TS+ DS
Sbjct: 1  MGREKSPGLKILWVWTLGTAAILVTSVVRTRMQDMESMM---NQEQAPKQNHNTSAGDS 56

The following BLAST results are available for this feature:

BLAST of Carg22723-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933307.1	1.6e-27	97.14	uncharacterized protein LOC111440489 [Cucurbita moschata]	[more]
XP_022987500.1	2.6e-17	76.81	uncharacterized protein LOC111485045 [Cucurbita maxima]	[more]
XP_023516467.1	2.6e-17	76.81	uncharacterized protein LOC111780326 [Cucurbita pepo subsp. pepo]	[more]
XP_022149993.1	2.4e-15	74.29	uncharacterized protein LOC111018274 [Momordica charantia]	[more]
XP_011660223.1	1.6e-14	68.57	PREDICTED: uncharacterized protein LOC105436351 [Cucumis sativus] >KGN66668.1 hy...	[more]

BLAST of Carg22723-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT1G06010.1	4.7e-13	54.69	unknown protein	[more]

BLAST of Carg22723-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg22723-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LY21\|A0A0A0LY21_CUCSA	1.0e-14	68.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G656450 PE=4 SV=1	[more]
tr\|A0A1S3B9D1\|A0A1S3B9D1_CUCME	4.4e-13	62.86	uncharacterized protein LOC103487223 OS=Cucumis melo OX=3656 GN=LOC103487223 PE=...	[more]
tr\|A0A2C9USH9\|A0A2C9USH9_MANES	2.0e-10	61.29	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G005400 PE=4 SV=...	[more]
tr\|A0A2P5C2C0\|A0A2P5C2C0_9ROSA	2.7e-10	77.27	Basic leucine zipper/W2 domain protein OS=Trema orientalis OX=63057 GN=TorRG33x0...	[more]
tr\|A0A1J3HQP7\|A0A1J3HQP7_NOCCA	4.5e-10	67.80	Uncharacterized protein OS=Noccaea caerulescens OX=107243 GN=LC_TR5076_c0_g1_i1_...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg22723	Carg22723	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg22723-RA.CDS.1	Carg22723-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg22723-RA.exon.1	Carg22723-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg22723-RA	Carg22723-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..63