Bhi01G000818 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi01G000818
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	DNA binding protein
Location	chr1 : 21928922 .. 21929179 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGAGAGCAGCTCTTGACGCTAGGGCTGTAGCGGAGATGAAGATCAAGAACGCTGCCTTTGCGAAGAAACAAGCTACTCTTGCATTGGAACGGCTTGCTTATCTTGTGCTTCAGGAGAAGGACAGAAATGGATATGCTAAAACTAATGGAGATGCTGTTGCTGGTGAGAGGACGGTTGAAGAAGAAGATTCCAAGCTACAGGAGAAAGAGGTAACATCCATTTTTAATCGTATGAAGGGGAATCGGACTCCATAG

mRNA sequence

ATGCGGAGAGCAGCTCTTGACGCTAGGGCTGTAGCGGAGATGAAGATCAAGAACGCTGCCTTTGCGAAGAAACAAGCTACTCTTGCATTGGAACGGCTTGCTTATCTTGTGCTTCAGGAGAAGGACAGAAATGGATATGCTAAAACTAATGGAGATGCTGTTGCTGGTGAGAGGACGGTTGAAGAAGAAGATTCCAAGCTACAGGAGAAAGAGGTAACATCCATTTTTAATCGTATGAAGGGGAATCGGACTCCATAG

Coding sequence (CDS)

ATGCGGAGAGCAGCTCTTGACGCTAGGGCTGTAGCGGAGATGAAGATCAAGAACGCTGCCTTTGCGAAGAAACAAGCTACTCTTGCATTGGAACGGCTTGCTTATCTTGTGCTTCAGGAGAAGGACAGAAATGGATATGCTAAAACTAATGGAGATGCTGTTGCTGGTGAGAGGACGGTTGAAGAAGAAGATTCCAAGCTACAGGAGAAAGAGGTAACATCCATTTTTAATCGTATGAAGGGGAATCGGACTCCATAG

Protein sequence

MRRAALDARAVAEMKIKNAAFAKKQATLALERLAYLVLQEKDRNGYAKTNGDAVAGERTVEEEDSKLQEKEVTSIFNRMKGNRTP

Homology

[Close]

BLAST of Bhi01G000818 vs. TrEMBL
Match: tr|A0A1S4DSP5|A0A1S4DSP5_CUCME (uncharacterized protein LOC103483924 OS=Cucumis melo OX=3656 GN=LOC103483924 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-10
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 28  LALERLAYLVLQEKDRNGYAKTNGDAVAGERTVEEEDSKLQEKEVTSIFN 78
           LALE+LAYLVLQEKD+NGY+K+NGDAVA ER VEEE+ KL EKE   +FN
Sbjct: 179 LALEQLAYLVLQEKDKNGYSKSNGDAVASERNVEEEEYKLHEKERVVLFN 228

[Close]

BLAST of Bhi01G000818 vs. TrEMBL
Match: tr|A0A0A0L5G4|A0A0A0L5G4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171130 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-09
Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 33  LAYLVLQEKDRNGYAKTNGDAVAGERTVEEEDSKLQEKEVTSIFN 78
           LAYLVLQEKD+NGY+K+NGDAV  ER VEEE+ KLQEK+VT+IF+
Sbjct: 250 LAYLVLQEKDKNGYSKSNGDAVDSERKVEEEEYKLQEKDVTAIFD 294

[Close]

BLAST of Bhi01G000818 vs. TrEMBL
Match: tr|E5GC39|E5GC39_CUCME (DNA binding protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.7e-09
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 28  LALERLAYLVLQEKDRNGYAKTNGDAVAGERTVEEEDSKLQEKE 72
           LALE+LAYLVLQEKD+NGY+K+NGDAVA ER VEEE+ KL EKE
Sbjct: 179 LALEQLAYLVLQEKDKNGYSKSNGDAVASERNVEEEEYKLHEKE 222

[Close]

BLAST of Bhi01G000818 vs. NCBI nr
Match: XP_023527750.1 (uncharacterized protein LOC111790876 [Cucurbita pepo subsp. pepo] >XP_023527751.1 uncharacterized protein LOC111790876 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 92.8 bits (229), Expect = 6.0e-16
Identity = 51/72 (70.83%), Postives = 59/72 (81.94%), Query Frame = 0


Query: 13  EMKIKNAAFAKKQATLALERLAYLVLQEKDRNGYAKTNGDAVAGERTVEEEDSKLQEKEV 72
           EMKI+NA FAKKQATLALERLAYLVL  KDRNGYAKTNG+A AG    EEE+++LQ + V
Sbjct: 162 EMKIRNAVFAKKQATLALERLAYLVLHGKDRNGYAKTNGNAAAG-AVEEEEETELQGEVV 221

Query: 73  TSIFNRMKGNRT 85
           T+I  RMK N+T
Sbjct: 222 TAILERMKANQT 232

[Close]

BLAST of Bhi01G000818 vs. NCBI nr
Match: XP_022979918.1 (uncharacterized protein LOC111479468 [Cucurbita maxima])

HSP 1 Score: 86.3 bits (212), Expect = 5.6e-14
Identity = 47/64 (73.44%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 21  FAKKQATLALERLAYLVLQEKDRNGYAKTNGDAVAGERTVEEEDSKLQEKEVTSIFNRMK 80
           FAKKQATLALERLAYLVLQEKDRNGYAKTNG+A AG    EEE+++LQ + VT+I  RMK
Sbjct: 170 FAKKQATLALERLAYLVLQEKDRNGYAKTNGNAAAG-AVEEEEETELQGEVVTAILERMK 229

Query: 81  GNRT 85
            N+T
Sbjct: 230 ANQT 232

[Close]

BLAST of Bhi01G000818 vs. NCBI nr
Match: XP_022955770.1 (uncharacterized protein LOC111457661 [Cucurbita moschata])

HSP 1 Score: 84.3 bits (207), Expect = 2.1e-13
Identity = 46/64 (71.88%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 21  FAKKQATLALERLAYLVLQEKDRNGYAKTNGDAVAGERTVEEEDSKLQEKEVTSIFNRMK 80
           FAKKQATLALERLA+LVLQEKDRNGYAKTNG+A AG    EEE+++LQ + VT+I  RMK
Sbjct: 224 FAKKQATLALERLAFLVLQEKDRNGYAKTNGNAAAG-AVEEEEETELQGEVVTAILERMK 283

Query: 81  GNRT 85
            N T
Sbjct: 284 ANHT 286

[Close]

BLAST of Bhi01G000818 vs. NCBI nr
Match: XP_016899011.1 (PREDICTED: uncharacterized protein LOC103483924 [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 2.9e-10
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 28  LALERLAYLVLQEKDRNGYAKTNGDAVAGERTVEEEDSKLQEKEVTSIFN 78
           LALE+LAYLVLQEKD+NGY+K+NGDAVA ER VEEE+ KL EKE   +FN
Sbjct: 179 LALEQLAYLVLQEKDKNGYSKSNGDAVASERNVEEEEYKLHEKERVVLFN 228

[Close]

BLAST of Bhi01G000818 vs. NCBI nr
Match: KGN57205.1 (hypothetical protein Csa_3G171130 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 3.2e-09
Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 33  LAYLVLQEKDRNGYAKTNGDAVAGERTVEEEDSKLQEKEVTSIFN 78
           LAYLVLQEKD+NGY+K+NGDAV  ER VEEE+ KLQEK+VT+IF+
Sbjct: 250 LAYLVLQEKDKNGYSKSNGDAVDSERKVEEEEYKLQEKDVTAIFD 294

The following BLAST results are available for this feature:

BLAST of Bhi01G000818 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi01G000818 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi01G000818 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DSP5\|A0A1S4DSP5_CUCME	1.9e-10	74.00	uncharacterized protein LOC103483924 OS=Cucumis melo OX=3656 GN=LOC103483924 PE=...	[more]
tr\|A0A0A0L5G4\|A0A0A0L5G4_CUCSA	2.1e-09	75.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171130 PE=4 SV=1	[more]
tr\|E5GC39\|E5GC39_CUCME	2.7e-09	79.55	DNA binding protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of Bhi01G000818 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023527750.1	6.0e-16	70.83	uncharacterized protein LOC111790876 [Cucurbita pepo subsp. pepo] >XP_023527751....	[more]
XP_022979918.1	5.6e-14	73.44	uncharacterized protein LOC111479468 [Cucurbita maxima]	[more]
XP_022955770.1	2.1e-13	71.88	uncharacterized protein LOC111457661 [Cucurbita moschata]	[more]
XP_016899011.1	2.9e-10	74.00	PREDICTED: uncharacterized protein LOC103483924 [Cucumis melo]	[more]
KGN57205.1	3.2e-09	75.56	hypothetical protein Csa_3G171130 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016746	transferase activity, transferring acyl groups
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi01M000818	Bhi01M000818	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..68

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi01G000818	Csa3G171130	Cucumber (Chinese Long) v2	cuwgoB269
Bhi01G000818	MELO3C006751	Melon (DHL92) v3.5.1	mewgoB529
Bhi01G000818	CSPI03G15350	Wild cucumber (PI 183967)	cpiwgoB269
Bhi01G000818	Cucsa.252170	Cucumber (Gy14) v1	cgywgoB522
Bhi01G000818	CmaCh14G015570	Cucurbita maxima (Rimu)	cmawgoB0328
Bhi01G000818	CmaCh06G015870	Cucurbita maxima (Rimu)	cmawgoB1006
Bhi01G000818	CmoCh06G015810	Cucurbita moschata (Rifu)	cmowgoB1005
Bhi01G000818	CmoCh14G015920	Cucurbita moschata (Rifu)	cmowgoB0317
Bhi01G000818	Lsi05G013860	Bottle gourd (USVL1VR-Ls)	lsiwgoB444
Bhi01G000818	Cp4.1LG08g05540	Cucurbita pepo (Zucchini)	cpewgoB1110
Bhi01G000818	MELO3C006751.2	Melon (DHL92) v3.6.1	medwgoB530
Bhi01G000818	Carg19594	Silver-seed gourd	carwgoB0365
Bhi01G000818	Carg25656	Silver-seed gourd	carwgoB0876
Bhi01G000818	CsaV3_3G015530	Cucumber (Chinese Long) v3	cucwgoB272
Bhi01G000818	Cla021828	Watermelon (97103) v1	wgowmB201
Bhi01G000818	Cla97C05G088500	Watermelon (97103) v2	wgowmbB178

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi01G000818	Cucumber (Gy14) v2	cgybwgoB257
Bhi01G000818	Cucurbita pepo (Zucchini)	cpewgoB0783
Bhi01G000818	Watermelon (Charleston Gray)	wcgwgoB426