Carg25656 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25656
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	DNA binding protein
Location	Cucurbita_argyrosperma_scaffold_317 : 101421 .. 102806 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCGTCTCGGCAACATTGATCAGATGAAGCTCTCCATTGCCGTCCTTGGCAATGGTGGTTTTGTCATGTGGGTCGAGAGAGCCTTTAGTTCCTTCTAAGTCTCCCTCATGGCCACCTAAACAAAAAAAAATTAAAACCCTAAATTTTCACACGTAGAATTGATAAACTTTCGTGGAATTCATCATTGCATAAAATGAAGATAATAATAGTTATAGTACGTCAAGACACTTCTTCAACGGTCTCACCAGCTCTGAAGAATTCACTAGAGGCGAGCACAAGTAAACCCTAAAGTATATATATATTATATATATATATATATAATAAAATCTAAAATAATTTAAAATTTTAAAAAATAAATCTATATTCTCCTCTAAAAAAGAGATATAAAAAGAAATAAAAGATAAGTTTAAAAATTGGAATTTTAGAAGAAAATCCGTCTAAACTTATAAAAGACGTTATTCTGAGTTCAAAATTCAAACCAAGAGGGCCAAATCGCCTTTCTTCTTCTTCTTCTTCTTCTTCAGGTCAATCTCGATTCCTCCATTTCTTTCTGAGGAGGTTTCTCTCTCTTCAACAAAGTTTCTCTTTCTCTCTCTCTTCTTCAAGGTTCAGAACCCAAAGCCTCCTGTCGTTCTGATTCTCTCTCCGGCTCCGATTCTAGGGTTTCTGTTACGGCGAATGCTGTTCCTCCTCATCCGATGCAATCCAATTCTATTTCTCACTGCCAAGAATGCGGCATCACTCAATCCGAGTGTTGGATCCTCCACAATGTCCGTGTCAAAGCGTCCTTCCGTCGTCTCTGTACCAATTGCGTCCTCAGGAACAATATCTCCCGTTTCTGTCCCGTGTGCTTCGATGTTTATGACGATTCGACTGCGCCGCCGTCTCATCAGCGAGTTATGTGCTTCAGATGTCCTTCGATCTCTCATCTCTCTTGCATTTCTTTTCGTTTTTCTTCTACCTTCCTTTGCCCTCTCTGCTCTGATCCTTCTTTTACCTTCTTCGACTGTTTCGGCTCCGGCGGCCTTGGCCTTTGCCAATCGGAGTACGCCGTCGCTACTTTGGCCGGGAGAGACATTAGTGGTAAATCGGCTAAGGCGGTTGTCGCAGCGGCTCGTGTCGCCGCACAATCCATGCGGCGAGCGGCAGCCGACGCTAGGGCTATAGCGGAGATGAAGATCAAGAATGCTGCATTTGCCAAGAAGCAGGCTACTCTCGCATTGGAGCGGCTTGCTTATCTTGAGCTAGAGGAGAAAGATGGAAATGAACATGCTAATAGTAACGGAGATGCTGTGGCCGGTGAGATGACGGTGGAAGAACAGAAGCTGCAGGACTGGATATCTTCGATTCTCGAGCCTAAGATGCGGAATCAAACTCAGTAG

mRNA sequence

ATGGAGCGTCTCGGCAACATTGATCAGATGAAGCTCTCCATTGCCGTCCTTGGCAATGGTGGTTTTGTCATGGTTTCTGTTACGGCGAATGCTGTTCCTCCTCATCCGATGCAATCCAATTCTATTTCTCACTGCCAAGAATGCGGCATCACTCAATCCGAGTGTTGGATCCTCCACAATGTCCGTGTCAAAGCGTCCTTCCGTCGTCTCTGTACCAATTGCGTCCTCAGGAACAATATCTCCCGTTTCTGTCCCGTGTGCTTCGATGTTTATGACGATTCGACTGCGCCGCCGTCTCATCAGCGAGTTATGTGCTTCAGATGTCCTTCGATCTCTCATCTCTCTTGCATTTCTTTTCGTTTTTCTTCTACCTTCCTTTGCCCTCTCTGCTCTGATCCTTCTTTTACCTTCTTCGACTGTTTCGGCTCCGGCGGCCTTGGCCTTTGCCAATCGGAGTACGCCGTCGCTACTTTGGCCGGGAGAGACATTAGTGGTAAATCGGCTAAGGCGGTTGTCGCAGCGGCTCGTGTCGCCGCACAATCCATGCGGCGAGCGGCAGCCGACGCTAGGGCTATAGCGGAGATGAAGATCAAGAATGCTGCATTTGCCAAGAAGCAGGCTACTCTCGCATTGGAGCGGCTTGCTTATCTTGAGCTAGAGGAGAAAGATGGAAATGAACATGCTAATAGTAACGGAGATGCTGTGGCCGGTGAGATGACGGTGGAAGAACAGAAGCTGCAGGACTGGATATCTTCGATTCTCGAGCCTAAGATGCGGAATCAAACTCAGTAG

Coding sequence (CDS)

ATGGAGCGTCTCGGCAACATTGATCAGATGAAGCTCTCCATTGCCGTCCTTGGCAATGGTGGTTTTGTCATGGTTTCTGTTACGGCGAATGCTGTTCCTCCTCATCCGATGCAATCCAATTCTATTTCTCACTGCCAAGAATGCGGCATCACTCAATCCGAGTGTTGGATCCTCCACAATGTCCGTGTCAAAGCGTCCTTCCGTCGTCTCTGTACCAATTGCGTCCTCAGGAACAATATCTCCCGTTTCTGTCCCGTGTGCTTCGATGTTTATGACGATTCGACTGCGCCGCCGTCTCATCAGCGAGTTATGTGCTTCAGATGTCCTTCGATCTCTCATCTCTCTTGCATTTCTTTTCGTTTTTCTTCTACCTTCCTTTGCCCTCTCTGCTCTGATCCTTCTTTTACCTTCTTCGACTGTTTCGGCTCCGGCGGCCTTGGCCTTTGCCAATCGGAGTACGCCGTCGCTACTTTGGCCGGGAGAGACATTAGTGGTAAATCGGCTAAGGCGGTTGTCGCAGCGGCTCGTGTCGCCGCACAATCCATGCGGCGAGCGGCAGCCGACGCTAGGGCTATAGCGGAGATGAAGATCAAGAATGCTGCATTTGCCAAGAAGCAGGCTACTCTCGCATTGGAGCGGCTTGCTTATCTTGAGCTAGAGGAGAAAGATGGAAATGAACATGCTAATAGTAACGGAGATGCTGTGGCCGGTGAGATGACGGTGGAAGAACAGAAGCTGCAGGACTGGATATCTTCGATTCTCGAGCCTAAGATGCGGAATCAAACTCAGTAG

Protein sequence

MERLGNIDQMKLSIAVLGNGGFVMVSVTANAVPPHPMQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTAPPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVATLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAIAEMKIKNAAFAKKQATLALERLAYLELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPKMRNQTQ

Homology

[Close]

BLAST of Carg25656 vs. NCBI nr
Match: XP_022943680.1 (uncharacterized protein LOC111448356 [Cucurbita moschata])

HSP 1 Score: 349.7 bits (896), Expect = 8.4e-93
Identity = 226/227 (99.56%), Postives = 226/227 (99.56%), Query Frame = 0


Query: 37  MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 96
           MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA
Sbjct: 1   MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 60

Query: 97  PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 156
           PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA
Sbjct: 61  PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 120

Query: 157 TLAGRDISGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 216
           TLAGRDISGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 TLAGRDISGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 217 XELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPKMRNQTQ 264
           XELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPK RNQTQ
Sbjct: 181 XELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPKTRNQTQ 227

[Close]

BLAST of Carg25656 vs. NCBI nr
Match: XP_023540291.1 (uncharacterized protein LOC111800711 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 348.6 bits (893), Expect = 1.9e-92
Identity = 225/227 (99.12%), Postives = 226/227 (99.56%), Query Frame = 0


Query: 37  MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 96
           MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA
Sbjct: 1   MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 60

Query: 97  PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 156
           PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLG+CQSEYAVA
Sbjct: 61  PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGVCQSEYAVA 120

Query: 157 TLAGRDISGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 216
           TLAGRDISGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 TLAGRDISGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 217 XELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPKMRNQTQ 264
           XELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPK RNQTQ
Sbjct: 181 XELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPKTRNQTQ 227

[Close]

BLAST of Carg25656 vs. NCBI nr
Match: XP_022972158.1 (uncharacterized protein LOC111470781 [Cucurbita maxima])

HSP 1 Score: 342.0 bits (876), Expect = 1.7e-90
Identity = 221/227 (97.36%), Postives = 224/227 (98.68%), Query Frame = 0


Query: 37  MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 96
           MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNC+LRNNISRFCPVCFDVYDDSTA
Sbjct: 1   MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCILRNNISRFCPVCFDVYDDSTA 60

Query: 97  PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 156
           PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA
Sbjct: 61  PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 120

Query: 157 TLAGRDISGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 216
           TLAGRDISGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 TLAGRDISGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 217 XELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPKMRNQTQ 264
           XELEEKDGNE+ NSNGDAVAGEMTVEE KLQ+WISSILEPK RNQTQ
Sbjct: 181 XELEEKDGNEYGNSNGDAVAGEMTVEEHKLQEWISSILEPKTRNQTQ 227

[Close]

BLAST of Carg25656 vs. NCBI nr
Match: KGN57205.1 (hypothetical protein Csa_3G171130 [Cucumis sativus])

HSP 1 Score: 238.4 bits (607), Expect = 2.7e-59
Identity = 179/255 (70.20%), Postives = 202/255 (79.22%), Query Frame = 0


Query: 3   RLGNIDQMKLSIAVLGNGGFVMVSVTANA-VPP------HPMQSNSISHCQECGITQSEC 62
           ++ NID  +  I    +     VSV ANA VPP      + +QSNSISHCQ+CGI+QS C
Sbjct: 33  KIMNIDPHRAFIGFSLSVSHSRVSVPANATVPPMNRQHSNHLQSNSISHCQQCGISQSAC 92

Query: 63  WILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTAPPSHQRVMCFRCPSISHLS 122
           WILHNVR KA+FRRLCTNCVL++N+SRFCP+CFDVY+DST PPSH RVMCFRCPSISHLS
Sbjct: 93  WILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYEDSTPPPSHHRVMCFRCPSISHLS 152

Query: 123 CISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVATLAGRDISGKSXXXXXXXX 182
           C+SFRFSSTFLCPLCSDP F FFD F SGG  LCQSE  VA LAG+++  K XXXXXXXX
Sbjct: 153 CVSFRFSSTFLCPLCSDPRFVFFDGFDSGG-SLCQSESTVAFLAGKNVDAKXXXXXXXXX 212

Query: 183 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELEEKDGNEHANSNGDAV 242
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     L+EKD N ++ SNGDAV
Sbjct: 213 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAYLVLQEKDKNGYSKSNGDAV 272

Query: 243 AGEMTVEEQ--KLQD 249
             E  VEE+  KLQ+
Sbjct: 273 DSERKVEEEEYKLQE 286

[Close]

BLAST of Carg25656 vs. NCBI nr
Match: XP_004147629.1 (PREDICTED: uncharacterized protein LOC101204799 [Cucumis sativus])

HSP 1 Score: 232.3 bits (591), Expect = 1.9e-57
Identity = 166/214 (77.57%), Postives = 184/214 (85.98%), Query Frame = 0


Query: 37  MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 96
           +QSNSISHCQ+CGI+QS CWILHNVR KA+FRRLCTNCVL++N+SRFCP+CFDVY+DST 
Sbjct: 9   LQSNSISHCQQCGISQSACWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYEDSTP 68

Query: 97  PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 156
           PPSH RVMCFRCPSISHLSC+SFRFSSTFLCPLCSDP F FFD F SGG  LCQSE  VA
Sbjct: 69  PPSHHRVMCFRCPSISHLSCVSFRFSSTFLCPLCSDPRFVFFDGFDSGG-SLCQSESTVA 128

Query: 157 TLAGRDISGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 216
            LAG+++  K XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   
Sbjct: 129 FLAGKNVDAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAY 188

Query: 217 XELEEKDGNEHANSNGDAVAGEMTVEEQ--KLQD 249
             L+EKD N ++ SNGDAV  E  VEE+  KLQ+
Sbjct: 189 LVLQEKDKNGYSKSNGDAVDSERKVEEEEYKLQE 221

[Close]

BLAST of Carg25656 vs. TAIR10
Match: AT1G09520.1 (LOCATED IN: chloroplast)

HSP 1 Score: 96.3 bits (238), Expect = 3.0e-20
Identity = 47/103 (45.63%), Postives = 66/103 (64.08%), Query Frame = 0


Query: 39  SNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTAPP 98
           +NS   C +CG   S+ W++H VR++AS R  CT+C+LRN+ + FCP CF +YD S  PP
Sbjct: 20  ANSTERCDDCG--SSDAWVIHTVRLRASLRFFCTHCLLRNHPASFCPGCFALYDSS--PP 79

Query: 99  SHQRVMCF--RCPSISHLSCISFRFSSTFLCPLCSDP-SFTFF 139
           S +RV C    C S++H+ C       ++LCP C DP SF+FF
Sbjct: 80  SFRRVSCSIKGCHSLTHIHCAGDESHLSYLCPPCRDPNSFSFF 118

[Close]

BLAST of Carg25656 vs. TAIR10
Match: AT3G17460.1 (PHD finger family protein)

HSP 1 Score: 72.0 bits (175), Expect = 6.1e-13
Identity = 39/108 (36.11%), Postives = 57/108 (52.78%), Query Frame = 0


Query: 46  QECGI-TQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTAPPSHQRVM 105
           +EC +  + E   +H V    +FRRLCT+C+L+     FC VCF+++D+  A P   R++
Sbjct: 8   RECIVCREKEPSFIHTVIKTGAFRRLCTDCLLKEYREHFCSVCFNLFDN--AVPPQARII 67

Query: 106 CFRCPSISHLSCIS--------------FRFSSTFLCPLCSDPSFTFF 139
           C  CPS +HLSC +                    F C  CS+P+FTFF
Sbjct: 68  CVNCPSSTHLSCSTXXXXXXXXXXXXXXXXXXXXFTCQPCSNPNFTFF 113

[Close]

BLAST of Carg25656 vs. TrEMBL
Match: tr|A0A0A0L5G4|A0A0A0L5G4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171130 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.8e-59
Identity = 179/255 (70.20%), Postives = 202/255 (79.22%), Query Frame = 0


Query: 3   RLGNIDQMKLSIAVLGNGGFVMVSVTANA-VPP------HPMQSNSISHCQECGITQSEC 62
           ++ NID  +  I    +     VSV ANA VPP      + +QSNSISHCQ+CGI+QS C
Sbjct: 33  KIMNIDPHRAFIGFSLSVSHSRVSVPANATVPPMNRQHSNHLQSNSISHCQQCGISQSAC 92

Query: 63  WILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTAPPSHQRVMCFRCPSISHLS 122
           WILHNVR KA+FRRLCTNCVL++N+SRFCP+CFDVY+DST PPSH RVMCFRCPSISHLS
Sbjct: 93  WILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYEDSTPPPSHHRVMCFRCPSISHLS 152

Query: 123 CISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVATLAGRDISGKSXXXXXXXX 182
           C+SFRFSSTFLCPLCSDP F FFD F SGG  LCQSE  VA LAG+++  K XXXXXXXX
Sbjct: 153 CVSFRFSSTFLCPLCSDPRFVFFDGFDSGG-SLCQSESTVAFLAGKNVDAKXXXXXXXXX 212

Query: 183 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELEEKDGNEHANSNGDAV 242
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     L+EKD N ++ SNGDAV
Sbjct: 213 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAYLVLQEKDKNGYSKSNGDAV 272

Query: 243 AGEMTVEEQ--KLQD 249
             E  VEE+  KLQ+
Sbjct: 273 DSERKVEEEEYKLQE 286

[Close]

BLAST of Carg25656 vs. TrEMBL
Match: tr|A0A1S4DSP5|A0A1S4DSP5_CUCME (uncharacterized protein LOC103483924 OS=Cucumis melo OX=3656 GN=LOC103483924 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.4e-56
Identity = 154/209 (73.68%), Postives = 174/209 (83.25%), Query Frame = 0


Query: 37  MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 96
           +Q+NSISHCQECGI+QS CWILHNVR KA+FRRLCTNCVL++N+SRFCP+CFDVY+DST 
Sbjct: 8   LQTNSISHCQECGISQSACWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYEDSTP 67

Query: 97  PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 156
           PPSH RVMC+RCPSISHLSC+SFRFSSTFLCPLCSDP F FFD F S G+ L QSE  VA
Sbjct: 68  PPSHHRVMCYRCPSISHLSCVSFRFSSTFLCPLCSDPRFVFFDGFDS-GVSLRQSESTVA 127

Query: 157 TLAGRDISGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 216
            LAG+++  KS   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        
Sbjct: 128 FLAGKNVDAKSGKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLALEQLAY 187

Query: 217 XELEEKDGNEHANSNGDAVAGEMTVEEQK 246
             L+EKD N ++ SNGDAVA E  VEE++
Sbjct: 188 LVLQEKDKNGYSKSNGDAVASERNVEEEE 215

[Close]

BLAST of Carg25656 vs. TrEMBL
Match: tr|E5GC39|E5GC39_CUCME (DNA binding protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.4e-56
Identity = 154/209 (73.68%), Postives = 174/209 (83.25%), Query Frame = 0


Query: 37  MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 96
           +Q+NSISHCQECGI+QS CWILHNVR KA+FRRLCTNCVL++N+SRFCP+CFDVY+DST 
Sbjct: 8   LQTNSISHCQECGISQSACWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYEDSTP 67

Query: 97  PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 156
           PPSH RVMC+RCPSISHLSC+SFRFSSTFLCPLCSDP F FFD F S G+ L QSE  VA
Sbjct: 68  PPSHHRVMCYRCPSISHLSCVSFRFSSTFLCPLCSDPRFVFFDGFDS-GVSLRQSESTVA 127

Query: 157 TLAGRDISGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 216
            LAG+++  KS   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        
Sbjct: 128 FLAGKNVDAKSGKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLALEQLAY 187

Query: 217 XELEEKDGNEHANSNGDAVAGEMTVEEQK 246
             L+EKD N ++ SNGDAVA E  VEE++
Sbjct: 188 LVLQEKDKNGYSKSNGDAVASERNVEEEE 215

[Close]

BLAST of Carg25656 vs. TrEMBL
Match: tr|A0A1U8JZY9|A0A1U8JZY9_GOSHI (uncharacterized protein LOC107910521 OS=Gossypium hirsutum OX=3635 GN=LOC107910521 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.1e-23
Identity = 55/104 (52.88%), Postives = 78/104 (75.00%), Query Frame = 0


Query: 37  MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 96
           M+ + +S C  CG    E ++LHN+R +AS+RRLCTNCVL+N+   FCP+C +V+++S  
Sbjct: 1   MKRDQLSECGGCG--APERFLLHNLRHRASYRRLCTNCVLKNHQGLFCPICLEVFNES-- 60

Query: 97  PPSHQRVMCFRCPSISHLSCISFRFS-STFLCPLCSDPSFTFFD 140
           PP HQR++C +CPSISHLSC S   S S+F CP CS+P+F+FF+
Sbjct: 61  PPPHQRLICLKCPSISHLSCSSSSLSPSSFTCPPCSNPNFSFFN 100

[Close]

BLAST of Carg25656 vs. TrEMBL
Match: tr|A0A0D2RGU6|A0A0D2RGU6_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G072500 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.1e-23
Identity = 55/104 (52.88%), Postives = 78/104 (75.00%), Query Frame = 0


Query: 37  MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 96
           M+ + +S C  CG    E ++LHN+R +AS+RRLCTNCVL+N+   FCP+C +V+++S  
Sbjct: 1   MKRDQLSECGGCG--APERFLLHNLRHRASYRRLCTNCVLKNHQGLFCPICLEVFNES-- 60

Query: 97  PPSHQRVMCFRCPSISHLSCISFRFS-STFLCPLCSDPSFTFFD 140
           PP HQR++C +CPSISHLSC S   S S+F CP CS+P+F+FF+
Sbjct: 61  PPPHQRLICLKCPSISHLSCSSSSLSPSSFTCPPCSNPNFSFFN 100

The following BLAST results are available for this feature:

BLAST of Carg25656 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943680.1	8.4e-93	99.56	uncharacterized protein LOC111448356 [Cucurbita moschata]	[more]
XP_023540291.1	1.9e-92	99.12	uncharacterized protein LOC111800711 [Cucurbita pepo subsp. pepo]	[more]
XP_022972158.1	1.7e-90	97.36	uncharacterized protein LOC111470781 [Cucurbita maxima]	[more]
KGN57205.1	2.7e-59	70.20	hypothetical protein Csa_3G171130 [Cucumis sativus]	[more]
XP_004147629.1	1.9e-57	77.57	PREDICTED: uncharacterized protein LOC101204799 [Cucumis sativus]	[more]

BLAST of Carg25656 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09520.1	3.0e-20	45.63	LOCATED IN: chloroplast	[more]
AT3G17460.1	6.1e-13	36.11	PHD finger family protein	[more]

BLAST of Carg25656 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg25656 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L5G4\|A0A0A0L5G4_CUCSA	1.8e-59	70.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171130 PE=4 SV=1	[more]
tr\|A0A1S4DSP5\|A0A1S4DSP5_CUCME	1.4e-56	73.68	uncharacterized protein LOC103483924 OS=Cucumis melo OX=3656 GN=LOC103483924 PE=...	[more]
tr\|E5GC39\|E5GC39_CUCME	1.4e-56	73.68	DNA binding protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A1U8JZY9\|A0A1U8JZY9_GOSHI	2.1e-23	52.88	uncharacterized protein LOC107910521 OS=Gossypium hirsutum OX=3635 GN=LOC1079105...	[more]
tr\|A0A0D2RGU6\|A0A0D2RGU6_GOSRA	2.1e-23	52.88	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G072500 PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25656-RA	Carg25656-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34451	FAMILY NOT NAMED	coord: 38..238
None	No IPR available	PANTHER	PTHR34451:SF2	PHD FINGER FAMILY PROTEIN	coord: 38..238

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25656	Cla021828	Watermelon (97103) v1	carwmB0738
Carg25656	Csa3G171130	Cucumber (Chinese Long) v2	carcuB0757
Carg25656	MELO3C006751	Melon (DHL92) v3.5.1	carmeB0736
Carg25656	CSPI03G15350	Wild cucumber (PI 183967)	carcpiB0774
Carg25656	Cucsa.252170	Cucumber (Gy14) v1	carcgyB0833
Carg25656	CmaCh06G015870	Cucurbita maxima (Rimu)	carcmaB1036
Carg25656	CmaCh14G015570	Cucurbita maxima (Rimu)	carcmaB1035
Carg25656	CmoCh06G015810	Cucurbita moschata (Rifu)	carcmoB1007
Carg25656	CmoCh14G015920	Cucurbita moschata (Rifu)	carcmoB1006
Carg25656	Lsi05G013860	Bottle gourd (USVL1VR-Ls)	carlsiB678
Carg25656	Cp4.1LG08g05540	Cucurbita pepo (Zucchini)	carcpeB1043
Carg25656	MELO3C006751.2	Melon (DHL92) v3.6.1	carmedB0749
Carg25656	CsaV3_3G015530	Cucumber (Chinese Long) v3	carcucB0777
Carg25656	Cla97C05G088500	Watermelon (97103) v2	carwmbB0776
Carg25656	Bhi01G000818	Wax gourd	carwgoB0876

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg25656	Carg19594	Silver-seed gourd	carcarB317

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25656	Cucumber (Gy14) v2	carcgybB0736
Carg25656	Cucurbita pepo (Zucchini)	carcpeB1042
Carg25656	Watermelon (Charleston Gray)	carwcgB0718