CmoCh06G015810 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G015810
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	DNA binding protein
Location	Cmo_Chr06 : 11109258 .. 11109941 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATCCAATTCCATTTCTCACTGCCAAGAATGCGGCATCACTCAATCCGAGTGTTGGATCCTCCACAATGTCCGTGTCAAAGCGTCCTTCCGTCGTCTCTGTACCAATTGCGTCCTCAGGAACAATATCTCCCGTTTCTGTCCCGTGTGCTTCGATGTTTATGACGATTCGACTGCGCCGCCGTCTCATCAGCGAGTTATGTGCTTCAGATGTCCTTCGATCTCTCATCTCTCTTGCATTTCTTTTCGTTTTTCTTCTACCTTCCTTTGCCCTCTCTGCTCTGATCCTTCTTTTACCTTCTTCGACTGTTTCGGCTCCGGCGGCCTTGGCCTTTGCCAATCGGAGTACGCCGTCGCTACTTTGGCCGGGAGAGACATTAGTGGTAAATCGGCTAAGGCGGTTGTCGCAGCGGCTCGTGTCGCCGCTCAATCCATGCGGAGAGCGGCAGCTGACGCTAGGGCTGTAGCGGAGATGAAGATCAAGAATGCTGCGTTTGCCAAGAAGCAGGCTACTCTCGCATTGGAGCGGCTTGCTTATCTTGAGCTAGAGGAGAAAGATGGAAATGAACATGCTAATAGTAACGGAGATGCTGTGGCCGGTGAGATGACGGTGGAAGAACAGAAGCTGCAGGACTGGATATCTTCGATTCTCGAGCCTAAGACGCGGAATCAAACTCAGTAG

mRNA sequence

ATGCAATCCAATTCCATTTCTCACTGCCAAGAATGCGGCATCACTCAATCCGAGTGTTGGATCCTCCACAATGTCCGTGTCAAAGCGTCCTTCCGTCGTCTCTGTACCAATTGCGTCCTCAGGAACAATATCTCCCGTTTCTGTCCCGTGTGCTTCGATGTTTATGACGATTCGACTGCGCCGCCGTCTCATCAGCGAGTTATGTGCTTCAGATGTCCTTCGATCTCTCATCTCTCTTGCATTTCTTTTCGTTTTTCTTCTACCTTCCTTTGCCCTCTCTGCTCTGATCCTTCTTTTACCTTCTTCGACTGTTTCGGCTCCGGCGGCCTTGGCCTTTGCCAATCGGAGTACGCCGTCGCTACTTTGGCCGGGAGAGACATTAGTGGTAAATCGGCTAAGGCGGTTGTCGCAGCGGCTCGTGTCGCCGCTCAATCCATGCGGAGAGCGGCAGCTGACGCTAGGGCTGTAGCGGAGATGAAGATCAAGAATGCTGCGTTTGCCAAGAAGCAGGCTACTCTCGCATTGGAGCGGCTTGCTTATCTTGAGCTAGAGGAGAAAGATGGAAATGAACATGCTAATAGTAACGGAGATGCTGTGGCCGGTGAGATGACGGTGGAAGAACAGAAGCTGCAGGACTGGATATCTTCGATTCTCGAGCCTAAGACGCGGAATCAAACTCAGTAG

Coding sequence (CDS)

ATGCAATCCAATTCCATTTCTCACTGCCAAGAATGCGGCATCACTCAATCCGAGTGTTGGATCCTCCACAATGTCCGTGTCAAAGCGTCCTTCCGTCGTCTCTGTACCAATTGCGTCCTCAGGAACAATATCTCCCGTTTCTGTCCCGTGTGCTTCGATGTTTATGACGATTCGACTGCGCCGCCGTCTCATCAGCGAGTTATGTGCTTCAGATGTCCTTCGATCTCTCATCTCTCTTGCATTTCTTTTCGTTTTTCTTCTACCTTCCTTTGCCCTCTCTGCTCTGATCCTTCTTTTACCTTCTTCGACTGTTTCGGCTCCGGCGGCCTTGGCCTTTGCCAATCGGAGTACGCCGTCGCTACTTTGGCCGGGAGAGACATTAGTGGTAAATCGGCTAAGGCGGTTGTCGCAGCGGCTCGTGTCGCCGCTCAATCCATGCGGAGAGCGGCAGCTGACGCTAGGGCTGTAGCGGAGATGAAGATCAAGAATGCTGCGTTTGCCAAGAAGCAGGCTACTCTCGCATTGGAGCGGCTTGCTTATCTTGAGCTAGAGGAGAAAGATGGAAATGAACATGCTAATAGTAACGGAGATGCTGTGGCCGGTGAGATGACGGTGGAAGAACAGAAGCTGCAGGACTGGATATCTTCGATTCTCGAGCCTAAGACGCGGAATCAAACTCAGTAG

Homology

[Close]

BLAST of CmoCh06G015810 vs. TrEMBL
Match: A0A0A0L5G4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171130 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 5.8e-85
Identity = 166/214 (77.57%), Postives = 187/214 (87.38%), Query Frame = 1


Query: 1   MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 60
           +QSNSISHCQ+CGI+QS CWILHNVR KA+FRRLCTNCVL++N+SRFCP+CFDVY+DST 
Sbjct: 74  LQSNSISHCQQCGISQSACWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYEDSTP 133

Query: 61  PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 120
           PPSH RVMCFRCPSISHLSC+SFRFSSTFLCPLCSDP F FFD F SGG  LCQSE  VA
Sbjct: 134 PPSHHRVMCFRCPSISHLSCVSFRFSSTFLCPLCSDPRFVFFDGFDSGG-SLCQSESTVA 193

Query: 121 TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAY 180
            LAG+++  KS KA+VAAARV+AQSMRRAA DARAVAEMKIKNAAFAKKQATLALE+LAY
Sbjct: 194 FLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAEMKIKNAAFAKKQATLALEQLAY 253

Query: 181 LELEEKDGNEHANSNGDAVAGEMTVEEQ--KLQD 213
           L L+EKD N ++ SNGDAV  E  VEE+  KLQ+
Sbjct: 254 LVLQEKDKNGYSKSNGDAVDSERKVEEEEYKLQE 286

[Close]

BLAST of CmoCh06G015810 vs. TrEMBL
Match: E5GC39_CUCME (DNA binding protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 2.4e-83
Identity = 161/209 (77.03%), Postives = 184/209 (88.04%), Query Frame = 1


Query: 1   MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 60
           +Q+NSISHCQECGI+QS CWILHNVR KA+FRRLCTNCVL++N+SRFCP+CFDVY+DST 
Sbjct: 8   LQTNSISHCQECGISQSACWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYEDSTP 67

Query: 61  PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 120
           PPSH RVMC+RCPSISHLSC+SFRFSSTFLCPLCSDP F FFD F S G+ L QSE  VA
Sbjct: 68  PPSHHRVMCYRCPSISHLSCVSFRFSSTFLCPLCSDPRFVFFDGFDS-GVSLRQSESTVA 127

Query: 121 TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAY 180
            LAG+++  KS KA+VAAARV+AQSMRRAA DARAVAEMKIKNAAFAKKQATLALE+LAY
Sbjct: 128 FLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAEMKIKNAAFAKKQATLALEQLAY 187

Query: 181 LELEEKDGNEHANSNGDAVAGEMTVEEQK 210
           L L+EKD N ++ SNGDAVA E  VEE++
Sbjct: 188 LVLQEKDKNGYSKSNGDAVASERNVEEEE 215

[Close]

BLAST of CmoCh06G015810 vs. TrEMBL
Match: A0A067JYW7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19088 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 5.5e-35
Identity = 90/187 (48.13%), Postives = 122/187 (65.24%), Query Frame = 1


Query: 7   SHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTAPPSHQR 66
           S C  CG  +   W+LHNVR +A++RRLCTNC+L+++   FCP CF+VYD+S   P H+R
Sbjct: 4   SECGGCGGVRR--WVLHNVRHRAAYRRLCTNCILKSHQGLFCPFCFEVYDESL--PPHER 63

Query: 67  VMCFRCPSISHLSCISF---RFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVATLA 126
           +MC +CPSISHLSC+ +       +FLCP CS P+F+FF+   +            AT +
Sbjct: 64  LMCLKCPSISHLSCVPWSHPHSPPSFLCPACSTPNFSFFNLDSNN-----------ATNS 123

Query: 127 GRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAYLEL 186
           G  I   SA+A++A AR+AA SM +AA  AR  AE ++K AA AKK+A  ALERLAYL  
Sbjct: 124 GTPIDKDSARALLAGARIAAVSMAKAATVARVEAERRVKEAALAKKRAREALERLAYLAA 175

Query: 187 EEKDGNE 191
           +EK+  E
Sbjct: 184 KEKEMKE 175

[Close]

BLAST of CmoCh06G015810 vs. TrEMBL
Match: A0A0D2RGU6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G072500 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.9e-33
Identity = 93/205 (45.37%), Postives = 131/205 (63.90%), Query Frame = 1


Query: 1   MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 60
           M+ + +S C  CG    E ++LHN+R +AS+RRLCTNCVL+N+   FCP+C +V+++S  
Sbjct: 1   MKRDQLSECGGCGAP--ERFLLHNLRHRASYRRLCTNCVLKNHQGLFCPICLEVFNES-- 60

Query: 61  PPSHQRVMCFRCPSISHLSCISFRFS-STFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAV 120
           PP HQR++C +CPSISHLSC S   S S+F CP CS+P+F+FF+   +            
Sbjct: 61  PPPHQRLICLKCPSISHLSCSSSSLSPSSFTCPPCSNPNFSFFNLTPTKKPKSTPDHPPG 120

Query: 121 ATLAGRD----------ISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKK 180
           +TL G D          I  ++AKA++AAA++AA SM +AAA A+  AE ++K A  AKK
Sbjct: 121 STLDGDDDNNKTTNTRVIDKEAAKALLAAAKIAAASMTKAAAVAKVEAERRVKEATLAKK 180

Query: 181 QATLALERLAYLELEEKDGNEHANS 195
           +A  ALERLA   L  KD + H +S
Sbjct: 181 RAKEALERLAL--LARKDNDRHKSS 199

[Close]

BLAST of CmoCh06G015810 vs. TrEMBL
Match: A0A061EQG5_THECC (Translation initiation factor IF-2, putative OS=Theobroma cacao GN=TCM_021495 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 6.3e-31
Identity = 88/194 (45.36%), Postives = 123/194 (63.40%), Query Frame = 1


Query: 8   HCQECG-ITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTAPPSHQR 67
           H  ECG  +     +LHNVR +AS+RRLCTNCVL+N+   FCP+C +V+++S  PP HQR
Sbjct: 5   HQAECGGCSVPGRLLLHNVRYRASYRRLCTNCVLKNHQGLFCPICLEVFNES--PPPHQR 64

Query: 68  VMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGS-------------GGLGLC 127
           ++C +CPSISHLSC S    S+F CP CS+P+F+FF+   +             GG    
Sbjct: 65  LICLKCPSISHLSCSSSSSQSSFTCPPCSNPNFSFFNVDPNITNKKPKSTPDHQGG---- 124

Query: 128 QSEYAVATLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATL 187
            ++        R I  ++AKA++AAA++AA SM +AAA AR  AE ++K A  AKK+A  
Sbjct: 125 SNDDHDNDKKKRVIDREAAKALLAAAKIAAASMSKAAAVARVEAERRVKEATLAKKRAKE 184

[Close]

BLAST of CmoCh06G015810 vs. TAIR10
Match: AT1G09520.1 (AT1G09520.1 LOCATED IN: chloroplast)

HSP 1 Score: 112.1 bits (279), Expect = 4.6e-25
Identity = 71/187 (37.97%), Postives = 105/187 (56.15%), Query Frame = 1


Query: 3   SNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTAPP 62
           +NS   C +CG   S+ W++H VR++AS R  CT+C+LRN+ + FCP CF +YD S  PP
Sbjct: 20  ANSTERCDDCG--SSDAWVIHTVRLRASLRFFCTHCLLRNHPASFCPGCFALYDSS--PP 79

Query: 63  SHQRVMCF--RCPSISHLSCISFRFSSTFLCPLCSDP-SFTFFDCFGSGGLGLCQSEYAV 122
           S +RV C    C S++H+ C       ++LCP C DP SF+FF                V
Sbjct: 80  SFRRVSCSIKGCHSLTHIHCAGDESHLSYLCPPCRDPNSFSFF-------------RPIV 139

Query: 123 ATLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLA 182
                R +    ++A + AA++AA SM +A   A+   + + K AA AKK+A  ALE++ 
Sbjct: 140 DENGSRFVDKALSEAFLCAAKIAASSMNKAVMTAKCETDRRGKEAALAKKRAREALEQVV 189

Query: 183 YLELEEK 187
            L+ +EK
Sbjct: 200 MLDAKEK 189

[Close]

BLAST of CmoCh06G015810 vs. TAIR10
Match: AT3G17460.1 (AT3G17460.1 PHD finger family protein)

HSP 1 Score: 76.3 bits (186), Expect = 2.8e-14
Identity = 62/184 (33.70%), Postives = 91/184 (49.46%), Query Frame = 1


Query: 10  QECGIT-QSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTAPPSHQRVM 69
           +EC +  + E   +H V    +FRRLCT+C+L+     FC VCF+++D+  A P   R++
Sbjct: 8   RECIVCREKEPSFIHTVIKTGAFRRLCTDCLLKEYREHFCSVCFNLFDN--AVPPQARII 67

Query: 70  CFRCPSISHLSCISFRFS--------------STFLCPLCSDPSFTFFDCFGSGGLGLCQ 129
           C  CPS +HLSC +   S              S+F C  CS+P+FTFF           +
Sbjct: 68  CVNCPSSTHLSCSTQPPSSSAASSSSSAPPPASSFTCQPCSNPNFTFFP----------K 127

Query: 130 SEYAVATLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLA 179
           S           ++ KSA A+VAA  ++  +M +A A  +  A  KI  A  AK +A  A
Sbjct: 128 SRVNEDVPDETPLTPKSAMALVAAGNISVANMNKAVALLKEEALKKIIAAKTAKLRAKGA 179

[Close]

BLAST of CmoCh06G015810 vs. NCBI nr
Match: gi|449459790|ref|XP_004147629.1| (PREDICTED: uncharacterized protein LOC101204799 [Cucumis sativus])

HSP 1 Score: 322.0 bits (824), Expect = 8.3e-85
Identity = 166/214 (77.57%), Postives = 187/214 (87.38%), Query Frame = 1


Query: 1   MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 60
           +QSNSISHCQ+CGI+QS CWILHNVR KA+FRRLCTNCVL++N+SRFCP+CFDVY+DST 
Sbjct: 9   LQSNSISHCQQCGISQSACWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYEDSTP 68

Query: 61  PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 120
           PPSH RVMCFRCPSISHLSC+SFRFSSTFLCPLCSDP F FFD F SGG  LCQSE  VA
Sbjct: 69  PPSHHRVMCFRCPSISHLSCVSFRFSSTFLCPLCSDPRFVFFDGFDSGG-SLCQSESTVA 128

Query: 121 TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAY 180
            LAG+++  KS KA+VAAARV+AQSMRRAA DARAVAEMKIKNAAFAKKQATLALE+LAY
Sbjct: 129 FLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAEMKIKNAAFAKKQATLALEQLAY 188

Query: 181 LELEEKDGNEHANSNGDAVAGEMTVEEQ--KLQD 213
           L L+EKD N ++ SNGDAV  E  VEE+  KLQ+
Sbjct: 189 LVLQEKDKNGYSKSNGDAVDSERKVEEEEYKLQE 221

[Close]

BLAST of CmoCh06G015810 vs. NCBI nr
Match: gi|700202072|gb|KGN57205.1| (hypothetical protein Csa_3G171130 [Cucumis sativus])

HSP 1 Score: 322.0 bits (824), Expect = 8.3e-85
Identity = 166/214 (77.57%), Postives = 187/214 (87.38%), Query Frame = 1


Query: 1   MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 60
           +QSNSISHCQ+CGI+QS CWILHNVR KA+FRRLCTNCVL++N+SRFCP+CFDVY+DST 
Sbjct: 74  LQSNSISHCQQCGISQSACWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYEDSTP 133

Query: 61  PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 120
           PPSH RVMCFRCPSISHLSC+SFRFSSTFLCPLCSDP F FFD F SGG  LCQSE  VA
Sbjct: 134 PPSHHRVMCFRCPSISHLSCVSFRFSSTFLCPLCSDPRFVFFDGFDSGG-SLCQSESTVA 193

Query: 121 TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAY 180
            LAG+++  KS KA+VAAARV+AQSMRRAA DARAVAEMKIKNAAFAKKQATLALE+LAY
Sbjct: 194 FLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAEMKIKNAAFAKKQATLALEQLAY 253

Query: 181 LELEEKDGNEHANSNGDAVAGEMTVEEQ--KLQD 213
           L L+EKD N ++ SNGDAV  E  VEE+  KLQ+
Sbjct: 254 LVLQEKDKNGYSKSNGDAVDSERKVEEEEYKLQE 286

[Close]

BLAST of CmoCh06G015810 vs. NCBI nr
Match: gi|307136200|gb|ADN34038.1| (DNA binding protein [Cucumis melo subsp. melo])

HSP 1 Score: 316.6 bits (810), Expect = 3.5e-83
Identity = 161/209 (77.03%), Postives = 184/209 (88.04%), Query Frame = 1


Query: 1   MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 60
           +Q+NSISHCQECGI+QS CWILHNVR KA+FRRLCTNCVL++N+SRFCP+CFDVY+DST 
Sbjct: 8   LQTNSISHCQECGISQSACWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYEDSTP 67

Query: 61  PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 120
           PPSH RVMC+RCPSISHLSC+SFRFSSTFLCPLCSDP F FFD F S G+ L QSE  VA
Sbjct: 68  PPSHHRVMCYRCPSISHLSCVSFRFSSTFLCPLCSDPRFVFFDGFDS-GVSLRQSESTVA 127

Query: 121 TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAY 180
            LAG+++  KS KA+VAAARV+AQSMRRAA DARAVAEMKIKNAAFAKKQATLALE+LAY
Sbjct: 128 FLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAEMKIKNAAFAKKQATLALEQLAY 187

Query: 181 LELEEKDGNEHANSNGDAVAGEMTVEEQK 210
           L L+EKD N ++ SNGDAVA E  VEE++
Sbjct: 188 LVLQEKDKNGYSKSNGDAVASERNVEEEE 215

[Close]

BLAST of CmoCh06G015810 vs. NCBI nr
Match: gi|659077036|ref|XP_008438997.1| (PREDICTED: uncharacterized protein LOC103483924 [Cucumis melo])

HSP 1 Score: 316.6 bits (810), Expect = 3.5e-83
Identity = 161/209 (77.03%), Postives = 184/209 (88.04%), Query Frame = 1


Query: 1   MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTA 60
           +Q+NSISHCQECGI+QS CWILHNVR KA+FRRLCTNCVL++N+SRFCP+CFDVY+DST 
Sbjct: 8   LQTNSISHCQECGISQSACWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYEDSTP 67

Query: 61  PPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVA 120
           PPSH RVMC+RCPSISHLSC+SFRFSSTFLCPLCSDP F FFD F S G+ L QSE  VA
Sbjct: 68  PPSHHRVMCYRCPSISHLSCVSFRFSSTFLCPLCSDPRFVFFDGFDS-GVSLRQSESTVA 127

Query: 121 TLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAY 180
            LAG+++  KS KA+VAAARV+AQSMRRAA DARAVAEMKIKNAAFAKKQATLALE+LAY
Sbjct: 128 FLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAEMKIKNAAFAKKQATLALEQLAY 187

Query: 181 LELEEKDGNEHANSNGDAVAGEMTVEEQK 210
           L L+EKD N ++ SNGDAVA E  VEE++
Sbjct: 188 LVLQEKDKNGYSKSNGDAVASERNVEEEE 215

[Close]

BLAST of CmoCh06G015810 vs. NCBI nr
Match: gi|802706826|ref|XP_012084199.1| (PREDICTED: uncharacterized protein LOC105643628 [Jatropha curcas])

HSP 1 Score: 156.0 bits (393), Expect = 7.9e-35
Identity = 90/187 (48.13%), Postives = 122/187 (65.24%), Query Frame = 1


Query: 7   SHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTAPPSHQR 66
           S C  CG  +   W+LHNVR +A++RRLCTNC+L+++   FCP CF+VYD+S   P H+R
Sbjct: 4   SECGGCGGVRR--WVLHNVRHRAAYRRLCTNCILKSHQGLFCPFCFEVYDESL--PPHER 63

Query: 67  VMCFRCPSISHLSCISF---RFSSTFLCPLCSDPSFTFFDCFGSGGLGLCQSEYAVATLA 126
           +MC +CPSISHLSC+ +       +FLCP CS P+F+FF+   +            AT +
Sbjct: 64  LMCLKCPSISHLSCVPWSHPHSPPSFLCPACSTPNFSFFNLDSNN-----------ATNS 123

Query: 127 GRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAYLEL 186
           G  I   SA+A++A AR+AA SM +AA  AR  AE ++K AA AKK+A  ALERLAYL  
Sbjct: 124 GTPIDKDSARALLAGARIAAVSMAKAATVARVEAERRVKEAALAKKRAREALERLAYLAA 175

Query: 187 EEKDGNE 191
           +EK+  E
Sbjct: 184 KEKEMKE 175

The following BLAST results are available for this feature:

BLAST of CmoCh06G015810 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh06G015810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5G4_CUCSA	5.8e-85	77.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171130 PE=4 SV=1	[more]
E5GC39_CUCME	2.4e-83	77.03	DNA binding protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A067JYW7_JATCU	5.5e-35	48.13	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19088 PE=4 SV=1	[more]
A0A0D2RGU6_GOSRA	3.9e-33	45.37	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G072500 PE=4 SV=1	[more]
A0A061EQG5_THECC	6.3e-31	45.36	Translation initiation factor IF-2, putative OS=Theobroma cacao GN=TCM_021495 PE...	[more]

BLAST of CmoCh06G015810 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09520.1	4.6e-25	37.97	LOCATED IN: chloroplast	[more]
AT3G17460.1	2.8e-14	33.70	PHD finger family protein	[more]

BLAST of CmoCh06G015810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459790\|ref\|XP_004147629.1\|	8.3e-85	77.57	PREDICTED: uncharacterized protein LOC101204799 [Cucumis sativus]	[more]
gi\|700202072\|gb\|KGN57205.1\|	8.3e-85	77.57	hypothetical protein Csa_3G171130 [Cucumis sativus]	[more]
gi\|307136200\|gb\|ADN34038.1\|	3.5e-83	77.03	DNA binding protein [Cucumis melo subsp. melo]	[more]
gi\|659077036\|ref\|XP_008438997.1\|	3.5e-83	77.03	PREDICTED: uncharacterized protein LOC103483924 [Cucumis melo]	[more]
gi\|802706826\|ref\|XP_012084199.1\|	7.9e-35	48.13	PREDICTED: uncharacterized protein LOC105643628 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0016746	transferase activity, transferring acyl groups

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G015810.1	CmoCh06G015810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 46..95 score: 2.
None	No IPR available	PANTHER	PTHR34451	FAMILY NOT NAMED	coord: 1..216 score: 1.5
None	No IPR available	PANTHER	PTHR34451:SF2	GENOMIC DNA, CHROMOSOME 3, P1 CLONE:MTO12	coord: 1..216 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G015810	Cucsa.252170	Cucumber (Gy14) v1	cgycmoB0718
CmoCh06G015810	CmaCh14G015570	Cucurbita maxima (Rimu)	cmacmoB271
CmoCh06G015810	CmaCh06G015870	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G015810	Cla021828	Watermelon (97103) v1	cmowmB793
CmoCh06G015810	Csa3G171130	Cucumber (Chinese Long) v2	cmocuB806
CmoCh06G015810	MELO3C006751	Melon (DHL92) v3.5.1	cmomeB755
CmoCh06G015810	CSPI03G15350	Wild cucumber (PI 183967)	cmocpiB814
CmoCh06G015810	Lsi05G013860	Bottle gourd (USVL1VR-Ls)	cmolsiB759
CmoCh06G015810	Cp4.1LG08g05540	Cucurbita pepo (Zucchini)	cmocpeB796
CmoCh06G015810	MELO3C006751.2	Melon (DHL92) v3.6.1	cmomedB857
CmoCh06G015810	CsaV3_3G015530	Cucumber (Chinese Long) v3	cmocucB0953
CmoCh06G015810	Cla97C05G088500	Watermelon (97103) v2	cmowmbB833
CmoCh06G015810	Bhi01G000818	Wax gourd	cmowgoB1005
CmoCh06G015810	Carg19594	Silver-seed gourd	carcmoB0390
CmoCh06G015810	Carg25656	Silver-seed gourd	carcmoB1007

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh06G015810	CmoCh14G015920	Cucurbita moschata (Rifu)	cmocmoB224

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G015810	Watermelon (Charleston Gray)	cmowcgB743
CmoCh06G015810	Watermelon (Charleston Gray)	cmowcgB747
CmoCh06G015810	Cucurbita pepo (Zucchini)	cmocpeB787
CmoCh06G015810	Cucumber (Gy14) v2	cgybcmoB401
CmoCh06G015810	Silver-seed gourd	carcmoB0103
CmoCh06G015810	Cucurbita maxima (Rimu)	cmacmoB363