Carg19594 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19594
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	DNA binding protein
Location	Cucurbita_argyrosperma_scaffold_117 : 58468 .. 60077 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGAAGACGTTGATGTGCAGATTGAGTTCAAAATTCAAACAAAGAGACCCAAATCGCCAGGCGACTTCTTCTTCTTCCTCGTTTTCACAGCCCCGGATTTTGTCGCCGGTTCCGATTCTAGGGTTTCTGTCCCGGCGAATGCTGCTGCTGTTCCTCCGATGAATCGGCCGCACTACAACCATCTTCAATCCAACTCCATTTCTAACTGCCACGAATGCGGGATTTCTCAGTCCGTATGCTGGATCCTCCACAATGTCCGTTTCAAAGCTTCCTTCCGTCGTCTCTGCACCAATTGCGTCCTTAAGAACAATCTTTCCCGTTTCTGTCCTCTTTGCTTCGATATTTACGACGATTCGACTCCGCCGTCGTCTCATCAGCGAGTTATGTGCTTCAGATGCCCTTCAATATCTCATGTCTCTTGTGCTTCCTTTCGTTTTTCTTCTACGTTCCTCTGCCCTGTCTGCTCCGATCCTTGCTTTGCCTTCTTCGACGGTTTCGACTCCGACGGCCTTCGCCAATCGGAGCCCGCCGTTGCCGTTTTGGCCGGTAGAGATGGTAAATCGGCGAAGGCGATTGTCGCTGCGGCTCGTGTCGCCGCTCAATCCATGCGAAGAGCGGCGGCTGACGCTAGGGCTGTAGCGGAGATGAAGATCAGGAATGCTGTGTTCGCTAAGAAGCAGGCTACTCTCGCCTTGGAACGGCTTGCTTTTCTTGTACTTCAGGAGAAAGACAGAAATGGATATGCTAAAACTAATGGAAATGCTGCTGCTGGTGCGGTGGAAGAAGAAGAAGAAACCGAGCTACAAGGTGAAGTGGTAACAGCCATTCTTGAGCGTATGAAGGCGAATCACACTCAGTTTTGACGGGGGTAGCTGATTAAGGAAACAAACTGTAGAGTAATCTTCTTCGACTCGCATTCAATCGAGTACCTCCAAGATTCAGTTGAATCAGGGCGCAGAGGTACTATTTACTCATCCATGGAAGCTTGTGGATCGATGCAGTGACGATTTTTCTATATTCATAGATGCAAGAACAAATCTGAAAAAGGAAGTTTGAATGGATTTCCATGTACATTTCAAAATTTCAATATTATTTGATTGTTCTTGTTCTGCTTTATCGATTCCAATTCTTCATTTTATCACTTCTGTTTGCTCTATATATATAGTTCTCAGCTTCTTCTTCATGCAGCTCTCTCTTCTATCGGCCATTTTTATCAGAATCTCATAGCTTTAGAGGTGTGGAAGCCATTGTTGCCGCCTTCAAGCTACAAGAATCGCCACTGCGGAGCCACGGTCAACATTTGATATTCAAATACCAGTGGCGGCGGAACGGTGGCCATATCAAGACGCCGGCGGCGATAGATAGTGCTGATTTCAACTAACAAAGTATGGATCTGCGGTGAATTTTCTGAGATACCATCATTTCGTTTCGTTTGATTCAGATTATAGACCGAGTCTGCTCGATTCAACTCGCTTCCAGTTAACCGAGTTGACTCAATGAATTTCCCCGTCCATTAATAATTTTTCTGAGTTCGGAAAAAAAAACTCTTCTTTTTCCTCGCAACTAATAAAGAACGTTACTTTTGAGAATAATATCTATAATTAAT

mRNA sequence

ATGAACGAAGACGTTGATGTGCAGATTGAGTTCAAAATTCAAACAAAGAGACCCAAATCGCCAGGCGACTTCTTCTTCTTCCTCGTTTTCACAGCCCCGGATTTTGTCGCCGGTTCCGATTCTAGGGTTTCTGTCCCGGCGAATGCTGCTGCTGTTCCTCCGATGAATCGGCCGCACTACAACCATCTTCAATCCAACTCCATTTCTAACTGCCACGAATGCGGGATTTCTCAGTCCGTATGCTGGATCCTCCACAATGTCCGTTTCAAAGCTTCCTTCCGTCGTCTCTGCACCAATTGCGTCCTTAAGAACAATCTTTCCCGTTTCTGTCCTCTTTGCTTCGATATTTACGACGATTCGACTCCGCCGTCGTCTCATCAGCGAGTTATGTGCTTCAGATGCCCTTCAATATCTCATGTCTCTTGTGCTTCCTTTCGTTTTTCTTCTACGTTCCTCTGCCCTGTCTGCTCCGATCCTTGCTTTGCCTTCTTCGACGGTTTCGACTCCGACGGCCTTCGCCAATCGGAGCCCGCCGTTGCCGTTTTGGCCGGTAGAGATGGTAAATCGGCGAAGGCGATTGTCGCTGCGGCTCGTGTCGCCGCTCAATCCATGCGAAGAGCGGCGGCTGACGCTAGGGCTGTAGCGGAGATGAAGATCAGGAATGCTGTGTTCGCTAAGAAGCAGGCTACTCTCGCCTTGGAACGGCTTGCTTTTCTTGTACTTCAGGAGAAAGACAGAAATGGATATGCTAAAACTAATGGAAATGCTGCTGCTGGTGCGGTGGAAGAAGAAGAAGAAACCGAGCTACAAGGTGAAGTGGTAACAGCCATTCTTGAGCGTATGAAGGCGAATCACACTCACTCTCTCTTCTATCGGCCATTTTTATCAGAATCTCATAGCTTTAGAGGTGTGGAAGCCATTGTTGCCGCCTTCAAGCTACAAGAATCGCCACTGCGGAGCCACGGTCAACATTTGATATTCAAATACCAGTGGCGGCGGAACGGTGGCCATATCAAGACGCCGGCGGCGATAGATAGTGCTGATTTCAACTAACAAAGTATGGATCTGCGGTGAATTTTCTGAGATACCATCATTTCGTTTCGTTTGATTCAGATTATAGACCGAGTCTGCTCGATTCAACTCGCTTCCAGTTAACCGAGTTGACTCAATGAATTTCCCCGTCCATTAATAATTTTTCTGAGTTCGGAAAAAAAAACTCTTCTTTTTCCTCGCAACTAATAAAGAACGTTACTTTTGAGAATAATATCTATAATTAAT

Coding sequence (CDS)

ATGAACGAAGACGTTGATGTGCAGATTGAGTTCAAAATTCAAACAAAGAGACCCAAATCGCCAGGCGACTTCTTCTTCTTCCTCGTTTTCACAGCCCCGGATTTTGTCGCCGGTTCCGATTCTAGGGTTTCTGTCCCGGCGAATGCTGCTGCTGTTCCTCCGATGAATCGGCCGCACTACAACCATCTTCAATCCAACTCCATTTCTAACTGCCACGAATGCGGGATTTCTCAGTCCGTATGCTGGATCCTCCACAATGTCCGTTTCAAAGCTTCCTTCCGTCGTCTCTGCACCAATTGCGTCCTTAAGAACAATCTTTCCCGTTTCTGTCCTCTTTGCTTCGATATTTACGACGATTCGACTCCGCCGTCGTCTCATCAGCGAGTTATGTGCTTCAGATGCCCTTCAATATCTCATGTCTCTTGTGCTTCCTTTCGTTTTTCTTCTACGTTCCTCTGCCCTGTCTGCTCCGATCCTTGCTTTGCCTTCTTCGACGGTTTCGACTCCGACGGCCTTCGCCAATCGGAGCCCGCCGTTGCCGTTTTGGCCGGTAGAGATGGTAAATCGGCGAAGGCGATTGTCGCTGCGGCTCGTGTCGCCGCTCAATCCATGCGAAGAGCGGCGGCTGACGCTAGGGCTGTAGCGGAGATGAAGATCAGGAATGCTGTGTTCGCTAAGAAGCAGGCTACTCTCGCCTTGGAACGGCTTGCTTTTCTTGTACTTCAGGAGAAAGACAGAAATGGATATGCTAAAACTAATGGAAATGCTGCTGCTGGTGCGGTGGAAGAAGAAGAAGAAACCGAGCTACAAGGTGAAGTGGTAACAGCCATTCTTGAGCGTATGAAGGCGAATCACACTCACTCTCTCTTCTATCGGCCATTTTTATCAGAATCTCATAGCTTTAGAGGTGTGGAAGCCATTGTTGCCGCCTTCAAGCTACAAGAATCGCCACTGCGGAGCCACGGTCAACATTTGATATTCAAATACCAGTGGCGGCGGAACGGTGGCCATATCAAGACGCCGGCGGCGATAGATAGTGCTGATTTCAACTAA

Protein sequence

MNEDVDVQIEFKIQTKRPKSPGDFFFFLVFTAPDFVAGSDSRVSVPANAAAVPPMNRPHYNHLQSNSISNCHECGISQSVCWILHNVRFKASFRRLCTNCVLKNNLSRFCPLCFDIYDDSTPPSSHQRVMCFRCPSISHVSCASFRFSSTFLCPVCSDPCFAFFDGFDSDGLRQSEPAVAVLAGRDGKSAKAIVAAARVAAQSMRRAAADARAVAEMKIRNAVFAKKQATLALERLAFLVLQEKDRNGYAKTNGNAAAGAVEEEEETELQGEVVTAILERMKANHTHSLFYRPFLSESHSFRGVEAIVAAFKLQESPLRSHGQHLIFKYQWRRNGGHIKTPAAIDSADFN

Homology

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BLAST of Carg19594 vs. NCBI nr
Match: XP_022955770.1 (uncharacterized protein LOC111457661 [Cucurbita moschata])

HSP 1 Score: 527.3 bits (1357), Expect = 3.9e-146
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 0


Query: 1   MNEDVDVQIEFKIQTKRPKSPGDFFFFLVFTAPDFVAGSDSRVSVPANAAAVPPMNRPHY 60
           MNEDVDVQIEFKIQTKRPKSPGDFFFFLVFTAPDFVAGSDSRVSVPANAAAVPPMNRPHY
Sbjct: 1   MNEDVDVQIEFKIQTKRPKSPGDFFFFLVFTAPDFVAGSDSRVSVPANAAAVPPMNRPHY 60

Query: 61  NHLQSNSISNCHECGISQSVCWILHNVRFKASFRRLCTNCVLKNNLSRFCPLCFDIYDDS 120
           NHLQSNSISNCHECGISQSVCWILHNVRFKASFRRLCTNCVLKNNLSRFCPLCFDIYDDS
Sbjct: 61  NHLQSNSISNCHECGISQSVCWILHNVRFKASFRRLCTNCVLKNNLSRFCPLCFDIYDDS 120

Query: 121 TPPSSHQRVMCFRCPSISHVSCASFRFSSTFLCPVCSDPCFAFFDGFDSDGLRQSEPAVA 180
           TPPSSHQRVMCFRCPSISHVSCASFRFSSTFLCPVCSDPCFAFFDGFDSDGLRQSEPAVA
Sbjct: 121 TPPSSHQRVMCFRCPSISHVSCASFRFSSTFLCPVCSDPCFAFFDGFDSDGLRQSEPAVA 180

Query: 181 VLAGRDGKSAKAIVAAARVAAQXXXXXXXXXXXXXXXXXXXXVFAKKQATLALERLAFLV 240
           VLAGRDGKSAKAIVAAARVAAQXXXXXXXXXXXXXXXXXXXXVFAKKQATLALERLAFLV
Sbjct: 181 VLAGRDGKSAKAIVAAARVAAQXXXXXXXXXXXXXXXXXXXXVFAKKQATLALERLAFLV 240

Query: 241 LQEKDRNGYAKTNGNAAAGAVEEEEETELQGEVVTAILERMKANHT 287
           LQEKDRNGYAKTNGNAAAGAVEEEEETELQGEVVTAILERMKANHT
Sbjct: 241 LQEKDRNGYAKTNGNAAAGAVEEEEETELQGEVVTAILERMKANHT 286

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BLAST of Carg19594 vs. NCBI nr
Match: XP_023527750.1 (uncharacterized protein LOC111790876 [Cucurbita pepo subsp. pepo] >XP_023527751.1 uncharacterized protein LOC111790876 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 405.6 bits (1041), Expect = 1.7e-109
Identity = 215/232 (92.67%), Postives = 217/232 (93.53%), Query Frame = 0


Query: 55  MNRPHYNHLQSNSISNCHECGISQSVCWILHNVRFKASFRRLCTNCVLKNNLSRFCPLCF 114
           MNRPH NHLQSNSISNCHECGISQSVCWILHNVRFKASFRRLCTNCVLKNNLSRFCPLCF
Sbjct: 1   MNRPHCNHLQSNSISNCHECGISQSVCWILHNVRFKASFRRLCTNCVLKNNLSRFCPLCF 60

Query: 115 DIYDDSTPPSSHQRVMCFRCPSISHVSCASFRFSSTFLCPVCSDPCFAFFDGFDSDGLRQ 174
           DIYDDSTPPSSHQRVMCFRCPSISHVSCASFRFSSTFLCP+CSDPCFAFFDGFDS GLRQ
Sbjct: 61  DIYDDSTPPSSHQRVMCFRCPSISHVSCASFRFSSTFLCPICSDPCFAFFDGFDSGGLRQ 120

Query: 175 SEPAVAVLAGRDGKSAKAIVAAARVAAQXXXXXXXXXXXXXXXXXXXXVFAKKQATLALE 234
           SEPAVAVLAGRDGKSAKAIVAAARVAAQ   XXXXXXXXXX       VFAKKQATLALE
Sbjct: 121 SEPAVAVLAGRDGKSAKAIVAAARVAAQSMRXXXXXXXXXXEMKIRNAVFAKKQATLALE 180

Query: 235 RLAFLVLQEKDRNGYAKTNGNAAAGAVEEEEETELQGEVVTAILERMKANHT 287
           RLA+LVL  KDRNGYAKTNGNAAAGAVEEEEETELQGEVVTAILERMKAN T
Sbjct: 181 RLAYLVLHGKDRNGYAKTNGNAAAGAVEEEEETELQGEVVTAILERMKANQT 232

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BLAST of Carg19594 vs. NCBI nr
Match: XP_022979918.1 (uncharacterized protein LOC111479468 [Cucurbita maxima])

HSP 1 Score: 398.7 bits (1023), Expect = 2.1e-107
Identity = 220/232 (94.83%), Postives = 224/232 (96.55%), Query Frame = 0


Query: 55  MNRPHYNHLQSNSISNCHECGISQSVCWILHNVRFKASFRRLCTNCVLKNNLSRFCPLCF 114
           MNRPH NHLQSNSISNCHECGISQSVCWILHNVRFKASFRRLCTNCVLKNNLSRFCPLCF
Sbjct: 1   MNRPHCNHLQSNSISNCHECGISQSVCWILHNVRFKASFRRLCTNCVLKNNLSRFCPLCF 60

Query: 115 DIYDDSTPPSSHQRVMCFRCPSISHVSCASFRFSSTFLCPVCSDPCFAFFDGFDSDGLRQ 174
           DIYDDSTPPSSHQRVMCFRCPSISH+SC SFRFSSTFLCP+CSDPCFAFFDGFDS  LRQ
Sbjct: 61  DIYDDSTPPSSHQRVMCFRCPSISHISCTSFRFSSTFLCPLCSDPCFAFFDGFDSGSLRQ 120

Query: 175 SEPAVAVLAGRDGKSAKAIVAAARVAAQXXXXXXXXXXXXXXXXXXXXVFAKKQATLALE 234
           SE AV+VLAGRDGKSAKAIVAAARV AQ XXXXXXXXXXXXXXXXXXXVFAKKQATLALE
Sbjct: 121 SELAVSVLAGRDGKSAKAIVAAARVVAQSXXXXXXXXXXXXXXXXXXXVFAKKQATLALE 180

Query: 235 RLAFLVLQEKDRNGYAKTNGNAAAGAVEEEEETELQGEVVTAILERMKANHT 287
           RLA+LVLQEKDRNGYAKTNGNAAAGAVEEEEETELQGEVVTAILERMKAN T
Sbjct: 181 RLAYLVLQEKDRNGYAKTNGNAAAGAVEEEEETELQGEVVTAILERMKANQT 232

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BLAST of Carg19594 vs. NCBI nr
Match: KGN57205.1 (hypothetical protein Csa_3G171130 [Cucumis sativus])

HSP 1 Score: 270.4 bits (690), Expect = 8.6e-69
Identity = 168/245 (68.57%), Postives = 186/245 (75.92%), Query Frame = 0


Query: 39  SDSRVSVPANAAAVPPMNRPHYNHLQSNSISNCHECGISQSVCWILHNVRFKASFRRLCT 98
           S SRVSVPAN A VPPMNR H NHLQSNSIS+C +CGISQS CWILHNVR KA+FRRLCT
Sbjct: 51  SHSRVSVPAN-ATVPPMNRQHSNHLQSNSISHCQQCGISQSACWILHNVRHKATFRRLCT 110

Query: 99  NCVLKNNLSRFCPLCFDIYDDSTPPSSHQRVMCFRCPSISHVSCASFRFSSTFLCPVCSD 158
           NCVLK+NLSRFCPLCFD+Y+DSTPP SH RVMCFRCPSISH+SC SFRFSSTFLCP+CSD
Sbjct: 111 NCVLKHNLSRFCPLCFDVYEDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCPLCSD 170

Query: 159 PCFAFFDGFDSDG-LRQSEPAVAVLAGR--DGKSAKAIVAAARVAAQXXXXXXXXXXXXX 218
           P F FFDGFDS G L QSE  VA LAG+  D K              XXXXXXXXXXXXX
Sbjct: 171 PRFVFFDGFDSGGSLCQSESTVAFLAGKNVDAKXXXXXXXXXXXXXXXXXXXXXXXXXXX 230

Query: 219 XXXXXXXVFAKKQATLALERLAFLVLQEKDRNGYAKTNGNAAAGAVE-EEEETELQGEVV 278
           XXXXXXX             LA+LVLQEKD+NGY+K+NG+A     + EEEE +LQ + V
Sbjct: 231 XXXXXXXXXXXXXXXXXXXXLAYLVLQEKDKNGYSKSNGDAVDSERKVEEEEYKLQEKDV 290

Query: 279 TAILE 280
           TAI +
Sbjct: 291 TAIFD 294

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BLAST of Carg19594 vs. NCBI nr
Match: ADN34038.1 (DNA binding protein [Cucumis melo subsp. melo])

HSP 1 Score: 259.6 bits (662), Expect = 1.5e-65
Identity = 171/273 (62.64%), Postives = 192/273 (70.33%), Query Frame = 0


Query: 55  MNRPHYNHLQSNSISNCHECGISQSVCWILHNVRFKASFRRLCTNCVLKNNLSRFCPLCF 114
           MNR   NHLQ+NSIS+C ECGISQS CWILHNVR KA+FRRLCTNCVLK+NLSRFCPLCF
Sbjct: 1   MNR-QLNHLQTNSISHCQECGISQSACWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCF 60

Query: 115 DIYDDSTPPSSHQRVMCFRCPSISHVSCASFRFSSTFLCPVCSDPCFAFFDGFDSD-GLR 174
           D+Y+DSTPP SH RVMC+RCPSISH+SC SFRFSSTFLCP+CSDP F FFDGFDS   LR
Sbjct: 61  DVYEDSTPPPSHHRVMCYRCPSISHLSCVSFRFSSTFLCPLCSDPRFVFFDGFDSGVSLR 120

Query: 175 QSEPAVAVLAGR--DGKSAKAIVAAARVAAQXXXXXXXXXXXXXXXXXXXXVFAKKQATL 234
           QSE  VA LAG+  D KS KA          XXXXXXXXXXXXXXXXXXXX        L
Sbjct: 121 QSESTVAFLAGKNVDAKSGKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL 180

Query: 235 ALERLAFLVLQEKDRNGYAKTNGNAAAGA--VEEEEETELQGEVVTAILERMKANHTHSL 294
           ALE+LA+LVLQEKD+NGY+K+NG+A A    VEEEE            L   +  H+   
Sbjct: 181 ALEQLAYLVLQEKDKNGYSKSNGDAVASERNVEEEEYK----------LHEKENRHSPID 240

Query: 295 FYRPFLSESHSFRGVEAI---VAAFKLQESPLR 320
              P L+E  S+R V AI    AA +L   P R
Sbjct: 241 IQMPVLAERWSYREVMAIAMTAAAIELVIRPSR 262

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BLAST of Carg19594 vs. TAIR10
Match: AT1G09520.1 (LOCATED IN: chloroplast)

HSP 1 Score: 101.3 bits (251), Expect = 1.3e-21
Identity = 65/187 (34.76%), Postives = 97/187 (51.87%), Query Frame = 0


Query: 65  SNSISNCHECGISQSVCWILHNVRFKASFRRLCTNCVLKNNLSRFCPLCFDIYDDSTPPS 124
           +NS   C +CG S +  W++H VR +AS R  CT+C+L+N+ + FCP CF +YD S  P 
Sbjct: 20  ANSTERCDDCGSSDA--WVIHTVRLRASLRFFCTHCLLRNHPASFCPGCFALYDSS--PP 79

Query: 125 SHQRVMCF--RCPSISHVSCASFRFSSTFLCPVCSDP-CFAFFDGF-DSDGLRQSEPAVA 184
           S +RV C    C S++H+ CA      ++LCP C DP  F+FF    D +G R  + A+ 
Sbjct: 80  SFRRVSCSIKGCHSLTHIHCAGDESHLSYLCPPCRDPNSFSFFRPIVDENGSRFVDKAL- 139

Query: 185 VLAGRDGKSAKAIVAAARVAAQXXXXXXXXXXXXXXXXXXXXVFAKKQATLALERLAFLV 244
                    ++A + AA++AA                       AKK+A  ALE++  L 
Sbjct: 140 ---------SEAFLCAAKIAASSMNKAVMTAKCETDRRGKEAALAKKRAREALEQVVMLD 192

Query: 245 LQEKDRN 248
            +EK R+
Sbjct: 200 AKEKARS 192

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BLAST of Carg19594 vs. TAIR10
Match: AT3G17460.1 (PHD finger family protein)

HSP 1 Score: 72.8 bits (177), Expect = 4.8e-13
Identity = 52/182 (28.57%), Postives = 80/182 (43.96%), Query Frame = 0


Query: 84  LHNVRFKASFRRLCTNCVLKNNLSRFCPLCFDIYDDSTPPSSHQRVMCFRCPSISHVSCA 143
           +H V    +FRRLCT+C+LK     FC +CF+++D++ PP +  R++C  CPS +H+SC+
Sbjct: 21  IHTVIKTGAFRRLCTDCLLKEYREHFCSVCFNLFDNAVPPQA--RIICVNCPSSTHLSCS 80

Query: 144 S--------------FRFSSTFLCPVCSDPCFAFFDGFDSDGLRQSEPAVAVLAGRDGKS 203
           +                    F C  CS+P F F   F    + +  P    L     KS
Sbjct: 81  TXXXXXXXXXXXXXXXXXXXXFTCQPCSNPNFTF---FPKSRVNEDVPDETPLT---PKS 140

Query: 204 AKAIVAAARVAAQXXXXXXXXXXXXXXXXXXXXVFAKKQATLALERLAFLVLQEKDRNGY 252
           A A+VAA  ++                        AK +A  AL  L  +V+++    G 
Sbjct: 141 AMALVAAGNISVANMNKAVALLKEEALKKIIAAKTAKLRAKGALTNLQDIVIRQSKVTGK 194

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BLAST of Carg19594 vs. TrEMBL
Match: tr|A0A0A0L5G4|A0A0A0L5G4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171130 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 5.7e-69
Identity = 168/245 (68.57%), Postives = 186/245 (75.92%), Query Frame = 0


Query: 39  SDSRVSVPANAAAVPPMNRPHYNHLQSNSISNCHECGISQSVCWILHNVRFKASFRRLCT 98
           S SRVSVPAN A VPPMNR H NHLQSNSIS+C +CGISQS CWILHNVR KA+FRRLCT
Sbjct: 51  SHSRVSVPAN-ATVPPMNRQHSNHLQSNSISHCQQCGISQSACWILHNVRHKATFRRLCT 110

Query: 99  NCVLKNNLSRFCPLCFDIYDDSTPPSSHQRVMCFRCPSISHVSCASFRFSSTFLCPVCSD 158
           NCVLK+NLSRFCPLCFD+Y+DSTPP SH RVMCFRCPSISH+SC SFRFSSTFLCP+CSD
Sbjct: 111 NCVLKHNLSRFCPLCFDVYEDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCPLCSD 170

Query: 159 PCFAFFDGFDSDG-LRQSEPAVAVLAGR--DGKSAKAIVAAARVAAQXXXXXXXXXXXXX 218
           P F FFDGFDS G L QSE  VA LAG+  D K              XXXXXXXXXXXXX
Sbjct: 171 PRFVFFDGFDSGGSLCQSESTVAFLAGKNVDAKXXXXXXXXXXXXXXXXXXXXXXXXXXX 230

Query: 219 XXXXXXXVFAKKQATLALERLAFLVLQEKDRNGYAKTNGNAAAGAVE-EEEETELQGEVV 278
           XXXXXXX             LA+LVLQEKD+NGY+K+NG+A     + EEEE +LQ + V
Sbjct: 231 XXXXXXXXXXXXXXXXXXXXLAYLVLQEKDKNGYSKSNGDAVDSERKVEEEEYKLQEKDV 290

Query: 279 TAILE 280
           TAI +
Sbjct: 291 TAIFD 294

[Close]

BLAST of Carg19594 vs. TrEMBL
Match: tr|E5GC39|E5GC39_CUCME (DNA binding protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 1.0e-65
Identity = 171/273 (62.64%), Postives = 192/273 (70.33%), Query Frame = 0


Query: 55  MNRPHYNHLQSNSISNCHECGISQSVCWILHNVRFKASFRRLCTNCVLKNNLSRFCPLCF 114
           MNR   NHLQ+NSIS+C ECGISQS CWILHNVR KA+FRRLCTNCVLK+NLSRFCPLCF
Sbjct: 1   MNR-QLNHLQTNSISHCQECGISQSACWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCF 60

Query: 115 DIYDDSTPPSSHQRVMCFRCPSISHVSCASFRFSSTFLCPVCSDPCFAFFDGFDSD-GLR 174
           D+Y+DSTPP SH RVMC+RCPSISH+SC SFRFSSTFLCP+CSDP F FFDGFDS   LR
Sbjct: 61  DVYEDSTPPPSHHRVMCYRCPSISHLSCVSFRFSSTFLCPLCSDPRFVFFDGFDSGVSLR 120

Query: 175 QSEPAVAVLAGR--DGKSAKAIVAAARVAAQXXXXXXXXXXXXXXXXXXXXVFAKKQATL 234
           QSE  VA LAG+  D KS KA          XXXXXXXXXXXXXXXXXXXX        L
Sbjct: 121 QSESTVAFLAGKNVDAKSGKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL 180

Query: 235 ALERLAFLVLQEKDRNGYAKTNGNAAAGA--VEEEEETELQGEVVTAILERMKANHTHSL 294
           ALE+LA+LVLQEKD+NGY+K+NG+A A    VEEEE            L   +  H+   
Sbjct: 181 ALEQLAYLVLQEKDKNGYSKSNGDAVASERNVEEEEYK----------LHEKENRHSPID 240

Query: 295 FYRPFLSESHSFRGVEAI---VAAFKLQESPLR 320
              P L+E  S+R V AI    AA +L   P R
Sbjct: 241 IQMPVLAERWSYREVMAIAMTAAAIELVIRPSR 262

[Close]

BLAST of Carg19594 vs. TrEMBL
Match: tr|A0A1S4DSP5|A0A1S4DSP5_CUCME (uncharacterized protein LOC103483924 OS=Cucumis melo OX=3656 GN=LOC103483924 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.5e-64
Identity = 156/216 (72.22%), Postives = 172/216 (79.63%), Query Frame = 0


Query: 55  MNRPHYNHLQSNSISNCHECGISQSVCWILHNVRFKASFRRLCTNCVLKNNLSRFCPLCF 114
           MNR   NHLQ+NSIS+C ECGISQS CWILHNVR KA+FRRLCTNCVLK+NLSRFCPLCF
Sbjct: 1   MNR-QLNHLQTNSISHCQECGISQSACWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCF 60

Query: 115 DIYDDSTPPSSHQRVMCFRCPSISHVSCASFRFSSTFLCPVCSDPCFAFFDGFDSD-GLR 174
           D+Y+DSTPP SH RVMC+RCPSISH+SC SFRFSSTFLCP+CSDP F FFDGFDS   LR
Sbjct: 61  DVYEDSTPPPSHHRVMCYRCPSISHLSCVSFRFSSTFLCPLCSDPRFVFFDGFDSGVSLR 120

Query: 175 QSEPAVAVLAGR--DGKSAKAIVAAARVAAQXXXXXXXXXXXXXXXXXXXXVFAKKQATL 234
           QSE  VA LAG+  D KS KA          XXXXXXXXXXXXXXXXXXXX        L
Sbjct: 121 QSESTVAFLAGKNVDAKSGKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL 180

Query: 235 ALERLAFLVLQEKDRNGYAKTNGNAAAGA--VEEEE 266
           ALE+LA+LVLQEKD+NGY+K+NG+A A    VEEEE
Sbjct: 181 ALEQLAYLVLQEKDKNGYSKSNGDAVASERNVEEEE 215

[Close]

BLAST of Carg19594 vs. TrEMBL
Match: tr|A0A218VRW6|A0A218VRW6_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr010645 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.2e-29
Identity = 96/248 (38.71%), Postives = 135/248 (54.44%), Query Frame = 0


Query: 55  MNRPHYNHLQSNSISNCHECGISQSV--CWILHNVRFKASFRRLCTNCVLKNNLSRFCPL 114
           M R H +H  + S ++C ECG   S    W+LHNVR KA++RRLCT+CVL      FCP+
Sbjct: 1   MKREH-DHSPAAS-AHCGECGGGSSAEERWLLHNVRHKATYRRLCTHCVLNCFRGHFCPV 60

Query: 115 CFDIYDD-STPPSSHQRVMCFRCPSISHVSCASFRFSS-TFLCPVCSDPCFAFF-----D 174
           C D++D   +PP  +QRVMC  CPSISH+SCA+       F CP CS+P F+FF      
Sbjct: 61  CLDVFDPIDSPPRPNQRVMCLNCPSISHLSCATSNSGGHPFQCPSCSNPNFSFFTLRTVP 120

Query: 175 GFDSDGLRQSEPAVAVLAGRDG----------KSAKAIVAAARVAAQXXXXXXXXXXXXX 234
             +     ++E   ++  GRDG          +SAKA+VAAAR+AA              
Sbjct: 121 ASNKRIKPEAEADCSLGGGRDGDIQDRRAIDKESAKALVAAARIAAATMSKAAHTARIEA 180

Query: 235 XXXXXXXVFAKKQATLALERLAFLVLQEKDRNGYAKTNGNAAAGAVEEEEETELQGEVVT 284
                    A+K+A  ALER+AFL L+EK+R    K   N   G V+E+   +++  V +
Sbjct: 181 ERRVKEAALARKRAREALERVAFLSLKEKERE--LKVTANGGLGIVQEQ---KMKPRVTS 240

[Close]

BLAST of Carg19594 vs. TrEMBL
Match: tr|A0A1Q3CE70|A0A1Q3CE70_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_21995 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.1e-27
Identity = 73/180 (40.56%), Postives = 104/180 (57.78%), Query Frame = 0


Query: 73  ECGI-SQSVCWILHNVRFKASFRRLCTNCVLKNNLSRFCPLCFDIYDDSTPPSSHQRVMC 132
           ECG+  +   W+LH++R + S+R+LCTNCVL N+   FCP+C  ++DD  PP  H R+MC
Sbjct: 7   ECGLCCREDRWLLHSLRHRGSYRKLCTNCVLNNHQGLFCPICLQVFDDD-PPPPHLRLMC 66

Query: 133 FRCPSISHVSCASFRFSSTFLCPVCSDPCFAFFDGFDSDGLRQSEPAVAVLAGRDGKSAK 192
            RCPSISH+SC S   ++ F CP CS+P F+F   F  +  R ++     +   D  SA 
Sbjct: 67  LRCPSISHLSCVSSSSAANFTCPPCSNPHFSF---FSVNHGRSNDKDTRFI---DKDSAN 126

Query: 193 AIVAAARVAAQXXXXXXXXXXXXXXXXXXXXVFAKKQATLALERLAFLVLQEKDRNGYAK 252
           A+VAAA++AA                      FAKK+A  ALERL +L  +EK+++   K
Sbjct: 127 ALVAAAKIAAASMTKAATLARVEAERRVKEAAFAKKRAREALERLLYLGAKEKEKDSKFK 179

The following BLAST results are available for this feature:

BLAST of Carg19594 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955770.1	3.9e-146	100.00	uncharacterized protein LOC111457661 [Cucurbita moschata]	[more]
XP_023527750.1	1.7e-109	92.67	uncharacterized protein LOC111790876 [Cucurbita pepo subsp. pepo] >XP_023527751....	[more]
XP_022979918.1	2.1e-107	94.83	uncharacterized protein LOC111479468 [Cucurbita maxima]	[more]
KGN57205.1	8.6e-69	68.57	hypothetical protein Csa_3G171130 [Cucumis sativus]	[more]
ADN34038.1	1.5e-65	62.64	DNA binding protein [Cucumis melo subsp. melo]	[more]

BLAST of Carg19594 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09520.1	1.3e-21	34.76	LOCATED IN: chloroplast	[more]
AT3G17460.1	4.8e-13	28.57	PHD finger family protein	[more]

BLAST of Carg19594 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg19594 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L5G4\|A0A0A0L5G4_CUCSA	5.7e-69	68.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171130 PE=4 SV=1	[more]
tr\|E5GC39\|E5GC39_CUCME	1.0e-65	62.64	DNA binding protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A1S4DSP5\|A0A1S4DSP5_CUCME	2.5e-64	72.22	uncharacterized protein LOC103483924 OS=Cucumis melo OX=3656 GN=LOC103483924 PE=...	[more]
tr\|A0A218VRW6\|A0A218VRW6_PUNGR	1.2e-29	38.71	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr010645 PE=4 SV=1	[more]
tr\|A0A1Q3CE70\|A0A1Q3CE70_CEPFO	4.1e-27	40.56	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_21995 PE=4...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19594-RA	Carg19594-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34451:SF2	PHD FINGER FAMILY PROTEIN	coord: 66..272
None	No IPR available	PANTHER	PTHR34451	FAMILY NOT NAMED	coord: 66..272

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19594	Cla021828	Watermelon (97103) v1	carwmB0269
Carg19594	Csa3G171130	Cucumber (Chinese Long) v2	carcuB0306
Carg19594	MELO3C006751	Melon (DHL92) v3.5.1	carmeB0280
Carg19594	CSPI03G15350	Wild cucumber (PI 183967)	carcpiB0310
Carg19594	Cucsa.252170	Cucumber (Gy14) v1	carcgyB0329
Carg19594	CmaCh06G015870	Cucurbita maxima (Rimu)	carcmaB0393
Carg19594	CmoCh06G015810	Cucurbita moschata (Rifu)	carcmoB0390
Carg19594	Lsi05G013860	Bottle gourd (USVL1VR-Ls)	carlsiB253
Carg19594	Cp4.1LG08g05540	Cucurbita pepo (Zucchini)	carcpeB0396
Carg19594	MELO3C006751.2	Melon (DHL92) v3.6.1	carmedB0292
Carg19594	CsaV3_3G015530	Cucumber (Chinese Long) v3	carcucB0309
Carg19594	Cla97C05G088500	Watermelon (97103) v2	carwmbB0287
Carg19594	Bhi01G000818	Wax gourd	carwgoB0365

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg19594	Carg25656	Silver-seed gourd	carcarB317

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19594	Silver-seed gourd	carcarB079
Carg19594	Cucumber (Gy14) v2	carcgybB0294
Carg19594	Cucurbita maxima (Rimu)	carcmaB0391
Carg19594	Cucurbita maxima (Rimu)	carcmaB0392
Carg19594	Cucurbita moschata (Rifu)	carcmoB0388
Carg19594	Cucurbita moschata (Rifu)	carcmoB0389
Carg19594	Cucurbita pepo (Zucchini)	carcpeB0393
Carg19594	Cucurbita pepo (Zucchini)	carcpeB0395
Carg19594	Bottle gourd (USVL1VR-Ls)	carlsiB252
Carg19594	Watermelon (Charleston Gray)	carwcgB0271
Carg19594	Wax gourd	carwgoB0364