Cp4.1LG08g05540 (gene) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAATCCAATTCCATTTCTCACTGCCAAGAATGCGGCATCACTCAATCCGAGTGTTGGATCCTCCACAATGTCCGTGTCAAAGCGTCCTTCCGTCGTCTCTGTACTAATTGCGTCCTCAGGAACAATATCTCCCGTTTCTGTCCCGTGTGCTTCGATGTTTATGACGATTCGACTGCGCCGCCGTCTCATCAGCGAGTTATGTGTTTCAGATGTCCTTCGATCTCTCATCTCTCTTGCATTTCTTTTCGTTTTTCTTCTACCTTCCTTTGCCCTCTCTGCTCTGATCCTTCTTTTACCTTCTTCGACTGTTTCGGCTCCGGCGGCCTTGGCGTTTGCCAATCGGAGTACGCCGTCGCTACTTTGGCCGGGAGAGACATTAGCGGTAAATCGGCTAAGGCGGTTGTCGCAGCGGCTCGTGTCGCCGCTCAATCCATGCGGAGAGCGGCAGCTGACGCTAGGGCTGTAGCGGAGATGAAGATCAAGAATGCTGCGTTTGCCAAGAAGCAGGCTACTCTCGCATTGGAGCGGCTTGCTTATCTTGAGCTAGAGGAGAAAGATGGAAATGAACATGCTAATAGTAACGGAGATGCTGTGGCCGGTGAGATGACGGTGGAAGAACAGAAGCTGCAGGACTGGATATCTTCGATTCTCGAGCCTAAGACGCGGAATCAAACTCAGTAG ATGCAATCCAATTCCATTTCTCACTGCCAAGAATGCGGCATCACTCAATCCGAGTGTTGGATCCTCCACAATGTCCGTGTCAAAGCGTCCTTCCGTCGTCTCTGTACTAATTGCGTCCTCAGGAACAATATCTCCCGTTTCTGTCCCGTGTGCTTCGATGTTTATGACGATTCGACTGCGCCGCCGTCTCATCAGCGAGTTATGTGTTTCAGATGTCCTTCGATCTCTCATCTCTCTTGCATTTCTTTTCGTTTTTCTTCTACCTTCCTTTGCCCTCTCTGCTCTGATCCTTCTTTTACCTTCTTCGACTGTTTCGGCTCCGGCGGCCTTGGCGTTTGCCAATCGGAGTACGCCGTCGCTACTTTGGCCGGGAGAGACATTAGCGGTAAATCGGCTAAGGCGGTTGTCGCAGCGGCTCGTGTCGCCGCTCAATCCATGCGGAGAGCGGCAGCTGACGCTAGGGCTGTAGCGGAGATGAAGATCAAGAATGCTGCGTTTGCCAAGAAGCAGGCTACTCTCGCATTGGAGCGGCTTGCTTATCTTGAGCTAGAGGAGAAAGATGGAAATGAACATGCTAATAGTAACGGAGATGCTGTGGCCGGTGAGATGACGGTGGAAGAACAGAAGCTGCAGGACTGGATATCTTCGATTCTCGAGCCTAAGACGCGGAATCAAACTCAGTAG ATGCAATCCAATTCCATTTCTCACTGCCAAGAATGCGGCATCACTCAATCCGAGTGTTGGATCCTCCACAATGTCCGTGTCAAAGCGTCCTTCCGTCGTCTCTGTACTAATTGCGTCCTCAGGAACAATATCTCCCGTTTCTGTCCCGTGTGCTTCGATGTTTATGACGATTCGACTGCGCCGCCGTCTCATCAGCGAGTTATGTGTTTCAGATGTCCTTCGATCTCTCATCTCTCTTGCATTTCTTTTCGTTTTTCTTCTACCTTCCTTTGCCCTCTCTGCTCTGATCCTTCTTTTACCTTCTTCGACTGTTTCGGCTCCGGCGGCCTTGGCGTTTGCCAATCGGAGTACGCCGTCGCTACTTTGGCCGGGAGAGACATTAGCGGTAAATCGGCTAAGGCGGTTGTCGCAGCGGCTCGTGTCGCCGCTCAATCCATGCGGAGAGCGGCAGCTGACGCTAGGGCTGTAGCGGAGATGAAGATCAAGAATGCTGCGTTTGCCAAGAAGCAGGCTACTCTCGCATTGGAGCGGCTTGCTTATCTTGAGCTAGAGGAGAAAGATGGAAATGAACATGCTAATAGTAACGGAGATGCTGTGGCCGGTGAGATGACGGTGGAAGAACAGAAGCTGCAGGACTGGATATCTTCGATTCTCGAGCCTAAGACGCGGAATCAAACTCAGTAG MQSNSISHCQECGITQSECWILHNVRVKASFRRLCTNCVLRNNISRFCPVCFDVYDDSTAPPSHQRVMCFRCPSISHLSCISFRFSSTFLCPLCSDPSFTFFDCFGSGGLGVCQSEYAVATLAGRDISGKSAKAVVAAARVAAQSMRRAAADARAVAEMKIKNAAFAKKQATLALERLAYLELEEKDGNEHANSNGDAVAGEMTVEEQKLQDWISSILEPKTRNQTQ
BLAST of Cp4.1LG08g05540 vs. TrEMBL
Match: A0A0A0L5G4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171130 PE=4 SV=1) HSP 1 Score: 320.9 bits (821), Expect = 1.3e-84 Identity = 165/214 (77.10%), Postives = 187/214 (87.38%), Query Frame = 1
BLAST of Cp4.1LG08g05540 vs. TrEMBL
Match: E5GC39_CUCME (DNA binding protein OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 315.5 bits (807), Expect = 5.4e-83 Identity = 160/209 (76.56%), Postives = 184/209 (88.04%), Query Frame = 1
BLAST of Cp4.1LG08g05540 vs. TrEMBL
Match: A0A067JYW7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19088 PE=4 SV=1) HSP 1 Score: 156.0 bits (393), Expect = 5.5e-35 Identity = 90/187 (48.13%), Postives = 122/187 (65.24%), Query Frame = 1
BLAST of Cp4.1LG08g05540 vs. TrEMBL
Match: A0A0D2RGU6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G072500 PE=4 SV=1) HSP 1 Score: 149.8 bits (377), Expect = 3.9e-33 Identity = 93/205 (45.37%), Postives = 131/205 (63.90%), Query Frame = 1
BLAST of Cp4.1LG08g05540 vs. TrEMBL
Match: A0A061EQG5_THECC (Translation initiation factor IF-2, putative OS=Theobroma cacao GN=TCM_021495 PE=4 SV=1) HSP 1 Score: 142.5 bits (358), Expect = 6.3e-31 Identity = 88/194 (45.36%), Postives = 123/194 (63.40%), Query Frame = 1
BLAST of Cp4.1LG08g05540 vs. TAIR10
Match: AT1G09520.1 (AT1G09520.1 LOCATED IN: chloroplast) HSP 1 Score: 111.7 bits (278), Expect = 6.0e-25 Identity = 71/187 (37.97%), Postives = 105/187 (56.15%), Query Frame = 1
BLAST of Cp4.1LG08g05540 vs. TAIR10
Match: AT3G17460.1 (AT3G17460.1 PHD finger family protein) HSP 1 Score: 76.3 bits (186), Expect = 2.8e-14 Identity = 62/184 (33.70%), Postives = 91/184 (49.46%), Query Frame = 1
BLAST of Cp4.1LG08g05540 vs. NCBI nr
Match: gi|449459790|ref|XP_004147629.1| (PREDICTED: uncharacterized protein LOC101204799 [Cucumis sativus]) HSP 1 Score: 320.9 bits (821), Expect = 1.8e-84 Identity = 165/214 (77.10%), Postives = 187/214 (87.38%), Query Frame = 1
BLAST of Cp4.1LG08g05540 vs. NCBI nr
Match: gi|700202072|gb|KGN57205.1| (hypothetical protein Csa_3G171130 [Cucumis sativus]) HSP 1 Score: 320.9 bits (821), Expect = 1.8e-84 Identity = 165/214 (77.10%), Postives = 187/214 (87.38%), Query Frame = 1
BLAST of Cp4.1LG08g05540 vs. NCBI nr
Match: gi|307136200|gb|ADN34038.1| (DNA binding protein [Cucumis melo subsp. melo]) HSP 1 Score: 315.5 bits (807), Expect = 7.8e-83 Identity = 160/209 (76.56%), Postives = 184/209 (88.04%), Query Frame = 1
BLAST of Cp4.1LG08g05540 vs. NCBI nr
Match: gi|659077036|ref|XP_008438997.1| (PREDICTED: uncharacterized protein LOC103483924 [Cucumis melo]) HSP 1 Score: 315.5 bits (807), Expect = 7.8e-83 Identity = 160/209 (76.56%), Postives = 184/209 (88.04%), Query Frame = 1
BLAST of Cp4.1LG08g05540 vs. NCBI nr
Match: gi|802706826|ref|XP_012084199.1| (PREDICTED: uncharacterized protein LOC105643628 [Jatropha curcas]) HSP 1 Score: 156.0 bits (393), Expect = 7.9e-35 Identity = 90/187 (48.13%), Postives = 122/187 (65.24%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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