Bhi01M000818 (mRNA) Wax gourd

NameBhi01M000818
TypemRNA
OrganismBenincasa hispida (Wax gourd)
DescriptionDNA binding protein
Locationchr1 : 21928922 .. 21929179 (-)
Sequence length258
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGAGAGCAGCTCTTGACGCTAGGGCTGTAGCGGAGATGAAGATCAAGAACGCTGCCTTTGCGAAGAAACAAGCTACTCTTGCATTGGAACGGCTTGCTTATCTTGTGCTTCAGGAGAAGGACAGAAATGGATATGCTAAAACTAATGGAGATGCTGTTGCTGGTGAGAGGACGGTTGAAGAAGAAGATTCCAAGCTACAGGAGAAAGAGGTAACATCCATTTTTAATCGTATGAAGGGGAATCGGACTCCATAG

mRNA sequence

ATGCGGAGAGCAGCTCTTGACGCTAGGGCTGTAGCGGAGATGAAGATCAAGAACGCTGCCTTTGCGAAGAAACAAGCTACTCTTGCATTGGAACGGCTTGCTTATCTTGTGCTTCAGGAGAAGGACAGAAATGGATATGCTAAAACTAATGGAGATGCTGTTGCTGGTGAGAGGACGGTTGAAGAAGAAGATTCCAAGCTACAGGAGAAAGAGGTAACATCCATTTTTAATCGTATGAAGGGGAATCGGACTCCATAG

Coding sequence (CDS)

ATGCGGAGAGCAGCTCTTGACGCTAGGGCTGTAGCGGAGATGAAGATCAAGAACGCTGCCTTTGCGAAGAAACAAGCTACTCTTGCATTGGAACGGCTTGCTTATCTTGTGCTTCAGGAGAAGGACAGAAATGGATATGCTAAAACTAATGGAGATGCTGTTGCTGGTGAGAGGACGGTTGAAGAAGAAGATTCCAAGCTACAGGAGAAAGAGGTAACATCCATTTTTAATCGTATGAAGGGGAATCGGACTCCATAG

Protein sequence

MRRAALDARAVAEMKIKNAAFAKKQATLALERLAYLVLQEKDRNGYAKTNGDAVAGERTVEEEDSKLQEKEVTSIFNRMKGNRTP
BLAST of Bhi01M000818 vs. TrEMBL
Match: tr|A0A1S4DSP5|A0A1S4DSP5_CUCME (uncharacterized protein LOC103483924 OS=Cucumis melo OX=3656 GN=LOC103483924 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-10
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 0

Query: 28  LALERLAYLVLQEKDRNGYAKTNGDAVAGERTVEEEDSKLQEKEVTSIFN 78
           LALE+LAYLVLQEKD+NGY+K+NGDAVA ER VEEE+ KL EKE   +FN
Sbjct: 179 LALEQLAYLVLQEKDKNGYSKSNGDAVASERNVEEEEYKLHEKERVVLFN 228

BLAST of Bhi01M000818 vs. TrEMBL
Match: tr|A0A0A0L5G4|A0A0A0L5G4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171130 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-09
Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 0

Query: 33  LAYLVLQEKDRNGYAKTNGDAVAGERTVEEEDSKLQEKEVTSIFN 78
           LAYLVLQEKD+NGY+K+NGDAV  ER VEEE+ KLQEK+VT+IF+
Sbjct: 250 LAYLVLQEKDKNGYSKSNGDAVDSERKVEEEEYKLQEKDVTAIFD 294

BLAST of Bhi01M000818 vs. TrEMBL
Match: tr|E5GC39|E5GC39_CUCME (DNA binding protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.7e-09
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 0

Query: 28  LALERLAYLVLQEKDRNGYAKTNGDAVAGERTVEEEDSKLQEKE 72
           LALE+LAYLVLQEKD+NGY+K+NGDAVA ER VEEE+ KL EKE
Sbjct: 179 LALEQLAYLVLQEKDKNGYSKSNGDAVASERNVEEEEYKLHEKE 222

BLAST of Bhi01M000818 vs. NCBI nr
Match: XP_023527750.1 (uncharacterized protein LOC111790876 [Cucurbita pepo subsp. pepo] >XP_023527751.1 uncharacterized protein LOC111790876 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 92.8 bits (229), Expect = 6.0e-16
Identity = 51/72 (70.83%), Postives = 59/72 (81.94%), Query Frame = 0

Query: 13  EMKIKNAAFAKKQATLALERLAYLVLQEKDRNGYAKTNGDAVAGERTVEEEDSKLQEKEV 72
           EMKI+NA FAKKQATLALERLAYLVL  KDRNGYAKTNG+A AG    EEE+++LQ + V
Sbjct: 162 EMKIRNAVFAKKQATLALERLAYLVLHGKDRNGYAKTNGNAAAG-AVEEEEETELQGEVV 221

Query: 73  TSIFNRMKGNRT 85
           T+I  RMK N+T
Sbjct: 222 TAILERMKANQT 232

BLAST of Bhi01M000818 vs. NCBI nr
Match: XP_022979918.1 (uncharacterized protein LOC111479468 [Cucurbita maxima])

HSP 1 Score: 86.3 bits (212), Expect = 5.6e-14
Identity = 47/64 (73.44%), Postives = 54/64 (84.38%), Query Frame = 0

Query: 21  FAKKQATLALERLAYLVLQEKDRNGYAKTNGDAVAGERTVEEEDSKLQEKEVTSIFNRMK 80
           FAKKQATLALERLAYLVLQEKDRNGYAKTNG+A AG    EEE+++LQ + VT+I  RMK
Sbjct: 170 FAKKQATLALERLAYLVLQEKDRNGYAKTNGNAAAG-AVEEEEETELQGEVVTAILERMK 229

Query: 81  GNRT 85
            N+T
Sbjct: 230 ANQT 232

BLAST of Bhi01M000818 vs. NCBI nr
Match: XP_022955770.1 (uncharacterized protein LOC111457661 [Cucurbita moschata])

HSP 1 Score: 84.3 bits (207), Expect = 2.1e-13
Identity = 46/64 (71.88%), Postives = 53/64 (82.81%), Query Frame = 0

Query: 21  FAKKQATLALERLAYLVLQEKDRNGYAKTNGDAVAGERTVEEEDSKLQEKEVTSIFNRMK 80
           FAKKQATLALERLA+LVLQEKDRNGYAKTNG+A AG    EEE+++LQ + VT+I  RMK
Sbjct: 224 FAKKQATLALERLAFLVLQEKDRNGYAKTNGNAAAG-AVEEEEETELQGEVVTAILERMK 283

Query: 81  GNRT 85
            N T
Sbjct: 284 ANHT 286

BLAST of Bhi01M000818 vs. NCBI nr
Match: XP_016899011.1 (PREDICTED: uncharacterized protein LOC103483924 [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 2.9e-10
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 0

Query: 28  LALERLAYLVLQEKDRNGYAKTNGDAVAGERTVEEEDSKLQEKEVTSIFN 78
           LALE+LAYLVLQEKD+NGY+K+NGDAVA ER VEEE+ KL EKE   +FN
Sbjct: 179 LALEQLAYLVLQEKDKNGYSKSNGDAVASERNVEEEEYKLHEKERVVLFN 228

BLAST of Bhi01M000818 vs. NCBI nr
Match: KGN57205.1 (hypothetical protein Csa_3G171130 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 3.2e-09
Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 0

Query: 33  LAYLVLQEKDRNGYAKTNGDAVAGERTVEEEDSKLQEKEVTSIFN 78
           LAYLVLQEKD+NGY+K+NGDAV  ER VEEE+ KLQEK+VT+IF+
Sbjct: 250 LAYLVLQEKDKNGYSKSNGDAVDSERKVEEEEYKLQEKDVTAIFD 294

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S4DSP5|A0A1S4DSP5_CUCME1.9e-1074.00uncharacterized protein LOC103483924 OS=Cucumis melo OX=3656 GN=LOC103483924 PE=... [more]
tr|A0A0A0L5G4|A0A0A0L5G4_CUCSA2.1e-0975.56Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171130 PE=4 SV=1[more]
tr|E5GC39|E5GC39_CUCME2.7e-0979.55DNA binding protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_023527750.16.0e-1670.83uncharacterized protein LOC111790876 [Cucurbita pepo subsp. pepo] >XP_023527751.... [more]
XP_022979918.15.6e-1473.44uncharacterized protein LOC111479468 [Cucurbita maxima][more]
XP_022955770.12.1e-1371.88uncharacterized protein LOC111457661 [Cucurbita moschata][more]
XP_016899011.12.9e-1074.00PREDICTED: uncharacterized protein LOC103483924 [Cucumis melo][more]
KGN57205.13.2e-0975.56hypothetical protein Csa_3G171130 [Cucumis sativus][more]

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi01G000818Bhi01G000818gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi01M000818cds.Bhi01M000818CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi01M000818.exon1Bhi01M000818.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi01M000818Bhi01M000818-proteinpolypeptide


Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..68