Spg012263.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg012263.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	cysteine proteinase inhibitor 6-like
Location	scaffold1: 10988325 .. 10988660 (+)
Sequence length	336
RNA-Seq Expression	Spg012263.1
Synteny	Spg012263.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAGTGTTACTCCACTTCCGATTGCTTTCAATAACCCATATGTTCAAGCAATGGGAAGTTTTGCGGTGGGGGAGCATACATTCAAGCTGTTAGGGGTAGAAATGAGGTTCATTCGCGTGGTGAAATATGAGATTCTGAAGTTGGATAATGCAAGGTCAAAATACAACCTTCTTGTGGAGGTGGAAGAAAACGTAGTGGCTCCACCTTTTCAATCATCTAGAAAGGTATATGTGGCTGGTGTGATGCATAATGAAGATGAAAAATCTTGGACACTCTTATGTTTTGACTCTGTGGACCTGAAACCCTATTGTCCTATAAATTCCAATGCCTAG

mRNA sequence

ATGGCTAGTGTTACTCCACTTCCGATTGCTTTCAATAACCCATATGTTCAAGCAATGGGAAGTTTTGCGGTGGGGGAGCATACATTCAAGCTGTTAGGGGTAGAAATGAGGTTCATTCGCGTGGTGAAATATGAGATTCTGAAGTTGGATAATGCAAGGTCAAAATACAACCTTCTTGTGGAGGTGGAAGAAAACGTAGTGGCTCCACCTTTTCAATCATCTAGAAAGGTATATGTGGCTGGTGTGATGCATAATGAAGATGAAAAATCTTGGACACTCTTATGTTTTGACTCTGTGGACCTGAAACCCTATTGTCCTATAAATTCCAATGCCTAG

Coding sequence (CDS)

ATGGCTAGTGTTACTCCACTTCCGATTGCTTTCAATAACCCATATGTTCAAGCAATGGGAAGTTTTGCGGTGGGGGAGCATACATTCAAGCTGTTAGGGGTAGAAATGAGGTTCATTCGCGTGGTGAAATATGAGATTCTGAAGTTGGATAATGCAAGGTCAAAATACAACCTTCTTGTGGAGGTGGAAGAAAACGTAGTGGCTCCACCTTTTCAATCATCTAGAAAGGTATATGTGGCTGGTGTGATGCATAATGAAGATGAAAAATCTTGGACACTCTTATGTTTTGACTCTGTGGACCTGAAACCCTATTGTCCTATAAATTCCAATGCCTAG

Protein sequence

MASVTPLPIAFNNPYVQAMGSFAVGEHTFKLLGVEMRFIRVVKYEILKLDNARSKYNLLVEVEENVVAPPFQSSRKVYVAGVMHNEDEKSWTLLCFDSVDLKPYCPINSNA

Homology

[Close]

BLAST of Spg012263.1 vs. NCBI nr
Match: KGN53820.1 (hypothetical protein Csa_014847 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-11
Identity = 39/87 (44.83%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 13  NPYVQAMGSFAVGEHTFKLLGVEMRFIRVVKYEILKLDNARSKYNLLVEVEENVVAPPFQ 72
           N Y+QAMG FAV EHT  + G+E +FI V    +  +     KY+LLV+V+E ++AP F 
Sbjct: 26  NEYLQAMGKFAVEEHTHNMSGIERKFISVGFAVVCSVPVGGDKYHLLVKVDEFILAPSFP 85

Query: 73  SSRKVYVAGVMHNEDEKSWTLLCFDSV 100
              K+Y+A V+HN+   SW LL F++V
Sbjct: 86  KYEKLYMATVLHNKVNHSWALLRFENV 112

[Close]

BLAST of Spg012263.1 vs. NCBI nr
Match: XP_023543511.1 (cysteine proteinase inhibitor 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 74.3 bits (181), Expect = 7.3e-10
Identity = 44/98 (44.90%), Postives = 59/98 (60.20%), Query Frame = 0


Query: 8   PIAFNNPYVQAMGSFAVGEHTFKLLGVEMRFIRVVKYEILKLDNARSKYNLLVEVEENVV 67
           P+  ++PYVQ +G FAV EH   L GV M F+RVV  E  K+     KY+L+VEV+E +V
Sbjct: 25  PVNVHDPYVQELGRFAVMEHVHGLCGVGMTFVRVVSGE-SKMVCEGKKYSLVVEVKEVLV 84

Query: 68  APPFQSSRKVYVAGVMHNEDEKSWTLLCFDSVDLKPYC 106
            P    + K+YVA V+  +  KSW LL F     KP+C
Sbjct: 85  LPHQCPAIKLYVAEVLDKQCAKSWELLAF-----KPFC 116

[Close]

BLAST of Spg012263.1 vs. NCBI nr
Match: KAE8649343.1 (hypothetical protein Csa_014384 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 2.8e-09
Identity = 38/96 (39.58%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 13  NPYVQAMGSFAVGEHTFKLLGVEMRFIRVVKYEILKLDNARSKYNLLVEVEENVVAPPFQ 72
           N Y+QAMG FAV E+T    G++ +FI V    +  +     KY+LLV+V+E ++AP   
Sbjct: 25  NSYLQAMGRFAVEEYTHYNKGIKRKFISVGFAVVCSVSVGEEKYHLLVKVDEFILAPSVP 84

Query: 73  SSRKVYVAGVMHNEDEKSWTLLCFDSVDLKPYCPIN 109
              KVYVA V+H +   SW LL F+        P N
Sbjct: 85  KFEKVYVATVLHKKVNHSWALLRFEDAAASTVSPTN 120

[Close]

BLAST of Spg012263.1 vs. NCBI nr
Match: WP_198843152.1 (hypothetical protein, partial [Aureibaculum sp. A20] >MBJ2176574.1 hypothetical protein [Aureibaculum sp. A20])

HSP 1 Score: 68.9 bits (167), Expect = 3.1e-08
Identity = 40/89 (44.94%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 12  NNPYVQAMGSFAVGEHTFKLLGVEMRFIRVVKYEILKLDNARSKYNLLVEVEENVV-APP 71
           ++PYVQ MG F+V EHT KL+G  M+FIRVV  E   +   + +Y L+VEV E+++  PP
Sbjct: 35  HDPYVQEMGRFSVMEHTHKLVGASMKFIRVVSGETRPMSEGK-EYRLVVEVAEHIITCPP 94

Query: 72  FQS-SRKVYVAGVMHNEDEKSWTLLCFDS 99
             S S K Y+A V+    ++SW L  F S
Sbjct: 95  MLSVSVKFYLATVLEKPLDRSWQLEAFVS 122

[Close]

BLAST of Spg012263.1 vs. NCBI nr
Match: XP_022132557.1 (cysteine proteinase inhibitor 6-like [Momordica charantia])

HSP 1 Score: 68.6 bits (166), Expect = 4.0e-08
Identity = 38/85 (44.71%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 12  NNPYVQAMGSFAVGEHTFKLLGVEMRFIRVVKYEILKLDNARSKYNLLVEVEENVVAPPF 71
           N+PYVQ +G FAV EHT  L G    FIRVV  E   +     KY L++EV+E ++ P  
Sbjct: 32  NDPYVQELGRFAVMEHTHNLCGASYEFIRVVSGESQVVGG--KKYCLVIEVKETIIIPSM 91

Query: 72  QSSRKVYVAGVMHNEDEKSWTLLCF 97
            SS K + A ++    EKSW LL F
Sbjct: 92  PSSIKFFKAIMLDKAWEKSWALLSF 114

[Close]

BLAST of Spg012263.1 vs. ExPASy TrEMBL
Match: A0A0A0KW14 (Acetate kinase OS=Cucumis sativus OX=3659 GN=Csa_4G151760 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 8.4e-12
Identity = 39/87 (44.83%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 13  NPYVQAMGSFAVGEHTFKLLGVEMRFIRVVKYEILKLDNARSKYNLLVEVEENVVAPPFQ 72
           N Y+QAMG FAV EHT  + G+E +FI V    +  +     KY+LLV+V+E ++AP F 
Sbjct: 26  NEYLQAMGKFAVEEHTHNMSGIERKFISVGFAVVCSVPVGGDKYHLLVKVDEFILAPSFP 85

Query: 73  SSRKVYVAGVMHNEDEKSWTLLCFDSV 100
              K+Y+A V+HN+   SW LL F++V
Sbjct: 86  KYEKLYMATVLHNKVNHSWALLRFENV 112

[Close]

BLAST of Spg012263.1 vs. ExPASy TrEMBL
Match: A0A6J1BU61 (cysteine proteinase inhibitor 6-like OS=Momordica charantia OX=3673 GN=LOC111005388 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.9e-08
Identity = 38/85 (44.71%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 12  NNPYVQAMGSFAVGEHTFKLLGVEMRFIRVVKYEILKLDNARSKYNLLVEVEENVVAPPF 71
           N+PYVQ +G FAV EHT  L G    FIRVV  E   +     KY L++EV+E ++ P  
Sbjct: 32  NDPYVQELGRFAVMEHTHNLCGASYEFIRVVSGESQVVGG--KKYCLVIEVKETIIIPSM 91

Query: 72  QSSRKVYVAGVMHNEDEKSWTLLCF 97
            SS K + A ++    EKSW LL F
Sbjct: 92  PSSIKFFKAIMLDKAWEKSWALLSF 114

The following BLAST results are available for this feature:

BLAST of Spg012263.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53820.1	1.7e-11	44.83	hypothetical protein Csa_014847 [Cucumis sativus]	[more]
XP_023543511.1	7.3e-10	44.90	cysteine proteinase inhibitor 5-like [Cucurbita pepo subsp. pepo]	[more]
KAE8649343.1	2.8e-09	39.58	hypothetical protein Csa_014384 [Cucumis sativus]	[more]
WP_198843152.1	3.1e-08	44.94	hypothetical protein, partial [Aureibaculum sp. A20] >MBJ2176574.1 hypothetical ...	[more]
XP_022132557.1	4.0e-08	44.71	cysteine proteinase inhibitor 6-like [Momordica charantia]	[more]

BLAST of Spg012263.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg012263.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW14	8.4e-12	44.83	Acetate kinase OS=Cucumis sativus OX=3659 GN=Csa_4G151760 PE=4 SV=1	[more]
A0A6J1BU61	1.9e-08	44.71	cysteine proteinase inhibitor 6-like OS=Momordica charantia OX=3673 GN=LOC111005...	[more]

BLAST of Spg012263.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.10		coord: 3..99 e-value: 8.3E-9 score: 37.5
None	No IPR available	SUPERFAMILY	54403	Cystatin/monellin	coord: 12..99

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg012263	Spg012263	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg012263.1-cds	Spg012263.1-cds-scaffold1:10988325..10988660	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg012263.1	Spg012263.1-protein	polypeptide