Cucsat.G15684 (gene) Cucumber (B10) v3

Overview
NameCucsat.G15684
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionYrdC-like domain-containing protein
Locationctg2009: 5777836 .. 5781526 (+)
RNA-Seq ExpressionCucsat.G15684
SyntenyCucsat.G15684
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAGTTGTAGAAAGTGGAAGATTGCATGCCTATTTATTTATTTATTTATGTAATGATGAAAAAAGAAAATCCAATTGAAATGTGACGTGGCATTCCAGGTGGGAAGTTCTATCTATGAACTGTGCCTCCTCTCCGATCACAGCTTCTCCCCTCTCTTTTCCTTCTCAGTTCCTAATTCCGGCGGTGCACTCACGCTGGTTCCCCAATCTCCCAAATGATCATCAATGTCAAACCCGGCCTACATCCTTCTACTGCTTCTTCTCTCTCTTCCTCTCGGGCTTTCGCACCAATACGCTTCCCTTCGCCTCCATCTGCCACTCCTTTCGACGGTTTTGAAACTTCCCGCCGCCTCCAGGTCCTCGCCATGGTTGTCAAGCGGAGTCCTAAGCGCCTCAAGTACTCGGCTCCACGCTTCACCAAGGTCCTCTCCTTCCTAACTACTTCTGTGTTTTTTTTTCAGCTTCATTATACCATGCCCTCGCTCCTACTTGTTCTATATGAAACTCTTATCGCTATTGCTCCGGATAGAATATCTAGTGGTGGAGGTAGAGTTGCGACAGGTGAATTAAGCATTTACGCTGTTTTCGTCGCTTATTTATTTTTACACTCTAGATAGATAATTAGTAAATTTTGCAGGAGATTGTGTTGTGGATTTGAACTGTTGGAAACACTTCTGACTGGTTAAGATTTTCCCTTCTGCGTGTGTGCGTTTCTTGTTGGGAGAGGGTGATATTATATGAACACTACTCTACTTCCACCGTGATCATATTCCAGTTTGGGATGCTTTATTGCTAGTTTTTGTTGGGAGTTAATTCAGTTGGGAATGAAATTTGGAAATTAATGAAGTTATTAGACTTGTGTTATTGATATGCTTAAAGTTACTATGGTCTTTACCAGGAAGGGAGCTTGATATATGTCAAAGCTGAATCAGGAGAGGACGGCTGGAAATTAGACCCTATTGTTAATCTTCTAAAAGAGGGTGCAGTTGGGGTTATTCCTACTGATACCGTGTATTTCCCTCTTACTTTATTTCACTCTCACCTTTTCAGATTTTTTTATTGTTATCATTGCTGACTCTCAAGTTGAAATTGGACGCTTGAACGAATAAATTTGTTCATAGTTAGAAAGAATCATATTTTCAATTTTTGTGTCATGCCACTCAGAAATTCAGAATTTAGGTTGTATTACCTCTTTTGGGAACAAGCTTCAAACTTCTGCAATAAATTTTTGGTTTTCCATAAATATACTTGCAATATTATTGGTTCCTTAAAATTGATTGTATCTGTATGGATCTTCTGATTGACGGATGAGAGTTCTCAAGGAAATGTAGAAGGTTTAATTTTGTGATCTTAAAGTTTACAGTGATCAGGAAAGCAGCAGGATAAATTCCTTTTTTGTTCTCACATTATTTATTATGATCTTGGTGGTTCATTTCATGAGTGTTGATTTCACTGCATTTTTGTTCCCTTGTGTACGTCTTCTTTGTCTGTCTTTTTATTTTTAACGGGTATGTATGCTTGTATTTTTCAAGGTATGGAATTGTTTGTGATCTGAAGAACCCCTCAGCCATTGAACGAATGCAGAGGTTGAAGTTGTTAATTTGTTTTGCTAGAAACTGTATTTGGTTAGATACTTCAGCTTCTCTCTCCTGCTGTTAAAGTTTCTTGTTTTGTTTAATGCAGGATCAAGAATATAGAGCCTACAAAGGTATCGTTATTTTTTACAATCTCTTTTATGTGCTTTACGATAATGCTCATATGGTCCTTCAAACTGTTGAACATCAATGCTCAAATGCGTATAATAAAGTTACTGAACAAGATGGTTTATTCTACTTAGATCCCTCATTTCTGTCTTCTATACAACCCACCTTTTCATTTTTCCATTATGCTTCTTAATTTTTACTTCTAATTAACTATGCAGCCTCTGAGCATTTTGTGCCGCTCCTTCCGGGACATTGATAAATATACTACAGGGTTTCCTCGTGGTGATGGCCAAGGCCATTCAAGTATATTTCGCATGGTTAAGCATTGTCTACCTGGACCAGTGAGTGGTTCTGCTAATCCTTCCTTATGACGATAACTCCATATTATCCCTCCTTCGGATTGCATGGTGTCCCAAATGACCTCTAGTACCTTTACTTTCGTAATCATGTAGATGTGAAAAAAAAAGACATTTTCTGGTGTTGTCCTATCTTGATACATTATAGTTCGCAGTGAAACTTTCAATGTACATTGAATTCTTTAACTATAGCTATTGATTTTTGAGAGTTCTTGTGTAACAGTACACCTTCATCTTGACTGCAAGCAAAGAGCTGCCTAAACATTGTATAAGGTATGGCACGACCACTGCAAAATATGCATCAAGGAAGAATGTAGGTGTGCGCATTCCTGATGATTCAATTTGTCAAGCAATACTGGAAAAGATGGACGACCCATTGATATCCACAAGGTTAGAACAATTAATACTCTTCTAATTCTCTCCACCCTCTTAACAAATTTCTTGATTGGTTTAGGGGACTTAAGACCTTCTGGATTGATCATCTATTTTTCATGCCACAATTCCCCATGAGACAGTTTTCAATTTGGTGCAATCGACCATCACTATTATAACAATATTCTCTCCACTTTTTCTATCCAGTTCTGGATTGAGCACTGGAAGGGGAGACTGCTTGTGTTTATATTAATTGGCTTAAGATAGCTGTAATTATTGAATTCTTACAATAATGATGGGTAAATAAGTACTTCGGAAGTGATGATTTGTTCAAACTTCAATCTATACATTTGCTGTTCTTTCAGTGTCAAATCCCCGAAGGAAAATGAGTGGTTGCTCGACCCAGTTGTCATAGCTGATATCTATGGACAAGAGGTATGAATAAATCTTACAGAGGCTGTGTGATTGTTTATGCTAATTTCTGCAGTTATGCCATTTCCCCCCCTGAAAGCGGGTTGTATGCTTCAAATAGGGTCTGGATTTTGTGGTGGATGGTGGAGTTAGAGTGGCAGATCCATCCACTGTAGTAGATATGACCATCACTCCTCCAAAGATTTTGCGGCAAGGGAAGGTAATTCATTAGTCATTTCCTTTCTAGTATGCTACCCCCTAAATTATGATTACACTCATCTCTTGCAATAACGTATGGAGCAGTATGGTAATGAATAGTACTGTCATTCAGTCAAAAACAATATTTTCTATTAACTTCAGATGAAACAGAATCTGAAGTTGATCATTCATTTCTTTACCATCCTGATCCCAATGATCAATCCTCATGGAATGGAATAAGCACCATCATTTCAAGTTTCTGTTGGATTTGGATGATGAATTATTTTTCATTGTCTTCCCACTTTTTGCTCGAATGATTTGCAACGTCCAGGGAGCTAGACTGCCATGGATGGTAGCTGAAGGTGATGACGAACCAAACATAGGTGAAGATATCCGCACCTGAACTTGCCATTTTGTAGATAATCCACTGAACATATTGCATGGAAGACATGATCCAGTTGCAGTTCACAAACAAATCTGGTGGAGTTTGTACAGTGTTTGCTATTGGTATATAAACTAACACTGAAAGAGGGTGGGCCTTTCTAAGTTGAAGATCAAATGTTGCTATACTGCTTGTCTTAGAGGTTTTTTTATCAACTTGAAAATTAGATTCTCTTTTACCTACATGTAATGTAACTCATAAATATAGGCAAATGCAATCCTCATTCTAAAATTTTCTCTTAGAAGAACAGAAGAATTTACATTTTCATTTGGGGAAATTTCTAATTTGGCCCTTATTGTTCCAATGTTCACTC

Coding sequence (CDS)

ATGATCATCAATGTCAAACCCGGCCTACATCCTTCTACTGCTTCTTCTCTCTCTTCCTCTCGGGCTTTCGCACCAATACGCTTCCCTTCGCCTCCATCTGCCACTCCTTTCGACGGTTTTGAAACTTCCCGCCGCCTCCAGGTCCTCGCCATGGTTGTCAAGCGGAGTCCTAAGCGCCTCAAGTACTCGGCTCCACGCTTCACCAAGGAAGGGAGCTTGATATATGTCAAAGCTGAATCAGGAGAGGACGGCTGGAAATTAGACCCTATTGTTAATCTTCTAAAAGAGGGTGCAGTTGGGGTTATTCCTACTGATACCGTGTATTTCCCTCTTACTTTATTTCACTCTCACCTTTTCAGATTTTTTTATTGTTATCATTGCTGA

Protein sequence

MIINVKPGLHPSTASSLSSSRAFAPIRFPSPPSATPFDGFETSRRLQVLAMVVKRSPKRLKYSAPRFTKEGSLIYVKAESGEDGWKLDPIVNLLKEGAVGVIPTDTVYFPLTLFHSHLFRFFYCYHC
Homology
[Close]
BLAST of Cucsat.G15684 vs. ExPASy Swiss-Prot
Match: P45103 (Uncharacterized protein HI_1198 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=HI_1198 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.4e-18
Identity = 51/169 (30.18%), Postives = 93/169 (55.03%), Query Frame = 0 

Query: 4   IKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKEL 63
           I+ +      +++C    ++  Y         + +++ +R++K+  PG YTFILTA+KEL
Sbjct: 56  IRKLPEGHNFTLVCSDLSELSTY--------ARVNNTAYRLIKNNTPGRYTFILTATKEL 115

Query: 64  PKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSP-KENEWLLDPV 123
           P+  +         + RK +G+R+PD+ I   +L  + +P++S S+  P +E+    DP 
Sbjct: 116 PRRLMT--------SKRKTIGLRVPDNKIALDLLSALGEPILSCSLMLPNEEHTTQSDPE 175

Query: 124 VIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWM 172
            I D   +  +D ++ GG    +P+TVVD+T   P ILR+G G+  P++
Sbjct: 176 EIRDRL-EHQVDLIIHGGYLGQEPTTVVDLTEESPVILREGSGSTAPFI 207

[Close]
BLAST of Cucsat.G15684 vs. ExPASy Swiss-Prot
Match: P0AFR5 (Uncharacterized protein YciO OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=yciO PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 9.7e-18
Identity = 50/169 (29.59%), Postives = 90/169 (53.25%), Query Frame = 0 

Query: 3   RIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKE 62
           RI+ +      +++CR   ++  Y+           +  FR++K+  PG YTFIL  +KE
Sbjct: 55  RIRQLPDGHNFTLMCRDLSELSTYSF--------VDNVAFRLMKNNTPGNYTFILKGTKE 114

Query: 63  LPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPV 122
           +P+  ++          RK +G+R+P + I QA+LE + +P++STS+  P       DP 
Sbjct: 115 VPRRLLQ--------EKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPE 174

Query: 123 VIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWM 172
            I D   ++ +D ++ GG     P+TV+D+T   P ++R+G G   P++
Sbjct: 175 EIKDRL-EKQVDLIIHGGYLGQKPTTVIDLTDDTPVVVREGVGDVKPFL 206

[Close]
BLAST of Cucsat.G15684 vs. ExPASy Swiss-Prot
Match: P0AFR4 (Uncharacterized protein YciO OS=Escherichia coli (strain K12) OX=83333 GN=yciO PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 9.7e-18
Identity = 50/169 (29.59%), Postives = 90/169 (53.25%), Query Frame = 0 

Query: 3   RIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKE 62
           RI+ +      +++CR   ++  Y+           +  FR++K+  PG YTFIL  +KE
Sbjct: 55  RIRQLPDGHNFTLMCRDLSELSTYSF--------VDNVAFRLMKNNTPGNYTFILKGTKE 114

Query: 63  LPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPV 122
           +P+  ++          RK +G+R+P + I QA+LE + +P++STS+  P       DP 
Sbjct: 115 VPRRLLQ--------EKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPE 174

Query: 123 VIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWM 172
            I D   ++ +D ++ GG     P+TV+D+T   P ++R+G G   P++
Sbjct: 175 EIKDRL-EKQVDLIIHGGYLGQKPTTVIDLTDDTPVVVREGVGDVKPFL 206

[Close]
BLAST of Cucsat.G15684 vs. ExPASy Swiss-Prot
Match: P0AFR6 (Uncharacterized protein YciO OS=Shigella flexneri OX=623 GN=yciO PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 9.7e-18
Identity = 50/169 (29.59%), Postives = 90/169 (53.25%), Query Frame = 0 

Query: 3   RIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKE 62
           RI+ +      +++CR   ++  Y+           +  FR++K+  PG YTFIL  +KE
Sbjct: 55  RIRQLPDGHNFTLMCRDLSELSTYSF--------VDNVAFRLMKNNTPGNYTFILKGTKE 114

Query: 63  LPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPV 122
           +P+  ++          RK +G+R+P + I QA+LE + +P++STS+  P       DP 
Sbjct: 115 VPRRLLQ--------EKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPE 174

Query: 123 VIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWM 172
            I D   ++ +D ++ GG     P+TV+D+T   P ++R+G G   P++
Sbjct: 175 EIKDRL-EKQVDLIIHGGYLGQKPTTVIDLTDDTPVVVREGVGDVKPFL 206

[Close]
BLAST of Cucsat.G15684 vs. ExPASy Swiss-Prot
Match: Q9UYB2 (Threonylcarbamoyl-AMP synthase OS=Pyrococcus abyssi (strain GE5 / Orsay) OX=272844 GN=sua5 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.9e-05
Identity = 37/121 (30.58%), Postives = 58/121 (47.93%), Query Frame = 0 

Query: 44  MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDP 103
           + K   PGP T +L  S+ +P+  I  G  T        V VR+P   I   ++E  + P
Sbjct: 88  LAKRFWPGPLTLVLPKSEVVPR-VITGGLDT--------VAVRMPAHEIALKLIELSERP 147

Query: 104 LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGG-VRVADPSTVVDMTITPPKILRQ 163
           + + S     +        V  D YG+  ++ ++DGG  R+   STV+D+T  PP +LR 
Sbjct: 148 IAAPSANISGKPSPTSAHHVAEDFYGK--IECIIDGGETRIGVESTVIDLTEWPPVLLRP 197

[Close]
BLAST of Cucsat.G15684 vs. NCBI nr
Match: XP_004145661.1 (uncharacterized protein LOC101214648 isoform X2 [Cucumis sativus] >KGN58172.1 hypothetical protein Csa_017456 [Cucumis sativus])

HSP 1 Score: 387 bits (994), Expect = 5.51e-134
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0 

Query: 1   MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 60
           MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS
Sbjct: 123 MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 182

Query: 61  KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 120
           KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD
Sbjct: 183 KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 242

Query: 121 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN 180
           PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN
Sbjct: 243 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN 302

Query: 181 IGEDIRT 187
           IGEDIRT
Sbjct: 303 IGEDIRT 309

[Close]
BLAST of Cucsat.G15684 vs. NCBI nr
Match: XP_008450106.1 (PREDICTED: uncharacterized protein YciO isoform X1 [Cucumis melo])

HSP 1 Score: 377 bits (968), Expect = 5.01e-130
Identity = 180/187 (96.26%), Postives = 186/187 (99.47%), Query Frame = 0 

Query: 1   MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 60
           M+RIKNIEP+KPLSILC SFRDIDKYTTGFPRGDGQGHS+IFRMVKHCLPGPYTFILTAS
Sbjct: 123 MRRIKNIEPSKPLSILCHSFRDIDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYTFILTAS 182

Query: 61  KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 120
           KELPKHCIRYGTTTAKYASRKNVGVRIPDD+ICQAILEKMD+PLISTSVKSPKENEWLLD
Sbjct: 183 KELPKHCIRYGTTTAKYASRKNVGVRIPDDAICQAILEKMDNPLISTSVKSPKENEWLLD 242

Query: 121 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN 180
           PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN
Sbjct: 243 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN 302

Query: 181 IGEDIRT 187
           +GEDIRT
Sbjct: 303 LGEDIRT 309

[Close]
BLAST of Cucsat.G15684 vs. NCBI nr
Match: TYK05316.1 (yrdC domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 377 bits (968), Expect = 2.27e-129
Identity = 180/187 (96.26%), Postives = 186/187 (99.47%), Query Frame = 0 

Query: 1   MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 60
           M+RIKNIEP+KPLSILC SFRDIDKYTTGFPRGDGQGHS+IFRMVKHCLPGPYTFILTAS
Sbjct: 167 MRRIKNIEPSKPLSILCHSFRDIDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYTFILTAS 226

Query: 61  KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 120
           KELPKHCIRYGTTTAKYASRKNVGVRIPDD+ICQAILEKMD+PLISTSVKSPKENEWLLD
Sbjct: 227 KELPKHCIRYGTTTAKYASRKNVGVRIPDDAICQAILEKMDNPLISTSVKSPKENEWLLD 286

Query: 121 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN 180
           PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN
Sbjct: 287 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN 346

Query: 181 IGEDIRT 187
           +GEDIRT
Sbjct: 347 LGEDIRT 353

[Close]
BLAST of Cucsat.G15684 vs. NCBI nr
Match: XP_038877956.1 (uncharacterized protein YciO [Benincasa hispida])

HSP 1 Score: 364 bits (934), Expect = 8.89e-125
Identity = 174/186 (93.55%), Postives = 182/186 (97.85%), Query Frame = 0 

Query: 1   MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 60
           ++RIKNIEP+KPLSILC SFRDIDKYTTGFPRGDGQGHS+IFRMVKHCLPGPYTFILTAS
Sbjct: 123 IRRIKNIEPSKPLSILCHSFRDIDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYTFILTAS 182

Query: 61  KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 120
           KELPKHCIRYGTTTAKYASRKNVGVRIPDD+ICQAILEKMD PLISTSVK+ KENEWLLD
Sbjct: 183 KELPKHCIRYGTTTAKYASRKNVGVRIPDDAICQAILEKMDAPLISTSVKNLKENEWLLD 242

Query: 121 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN 180
           PVVIADIYG+EGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEP 
Sbjct: 243 PVVIADIYGEEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPT 302

Query: 181 IGEDIR 186
           +GEDIR
Sbjct: 303 VGEDIR 308

[Close]
BLAST of Cucsat.G15684 vs. NCBI nr
Match: KAA0042916.1 (yrdC domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 358 bits (920), Expect = 5.52e-122
Identity = 171/176 (97.16%), Postives = 175/176 (99.43%), Query Frame = 0 

Query: 12  PLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKELPKHCIRYG 71
           PLSILC SFRDIDKYTTGFPRGDGQGHS+IFRMVKHCLPGPYTFILTASKELPKHCIRYG
Sbjct: 184 PLSILCHSFRDIDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYTFILTASKELPKHCIRYG 243

Query: 72  TTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPVVIADIYGQE 131
           TTTAKYASRKNVGVRIPDD+ICQAILEKMD+PLISTSVKSPKENEWLLDPVVIADIYGQE
Sbjct: 244 TTTAKYASRKNVGVRIPDDAICQAILEKMDNPLISTSVKSPKENEWLLDPVVIADIYGQE 303

Query: 132 GLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPNIGEDIRT 187
           GLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN+GEDIRT
Sbjct: 304 GLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPNLGEDIRT 359

[Close]
BLAST of Cucsat.G15684 vs. ExPASy TrEMBL
Match: A0A0A0LBV9 (YrdC-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G585350 PE=3 SV=1)

HSP 1 Score: 387 bits (994), Expect = 2.67e-134
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0 

Query: 1   MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 60
           MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS
Sbjct: 123 MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 182

Query: 61  KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 120
           KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD
Sbjct: 183 KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 242

Query: 121 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN 180
           PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN
Sbjct: 243 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN 302

Query: 181 IGEDIRT 187
           IGEDIRT
Sbjct: 303 IGEDIRT 309

[Close]
BLAST of Cucsat.G15684 vs. ExPASy TrEMBL
Match: A0A1S3BMX4 (uncharacterized protein YciO isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491794 PE=3 SV=1)

HSP 1 Score: 377 bits (968), Expect = 2.42e-130
Identity = 180/187 (96.26%), Postives = 186/187 (99.47%), Query Frame = 0 

Query: 1   MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 60
           M+RIKNIEP+KPLSILC SFRDIDKYTTGFPRGDGQGHS+IFRMVKHCLPGPYTFILTAS
Sbjct: 123 MRRIKNIEPSKPLSILCHSFRDIDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYTFILTAS 182

Query: 61  KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 120
           KELPKHCIRYGTTTAKYASRKNVGVRIPDD+ICQAILEKMD+PLISTSVKSPKENEWLLD
Sbjct: 183 KELPKHCIRYGTTTAKYASRKNVGVRIPDDAICQAILEKMDNPLISTSVKSPKENEWLLD 242

Query: 121 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN 180
           PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN
Sbjct: 243 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN 302

Query: 181 IGEDIRT 187
           +GEDIRT
Sbjct: 303 LGEDIRT 309

[Close]
BLAST of Cucsat.G15684 vs. ExPASy TrEMBL
Match: A0A5D3C4N1 (YrdC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001410 PE=3 SV=1)

HSP 1 Score: 377 bits (968), Expect = 1.10e-129
Identity = 180/187 (96.26%), Postives = 186/187 (99.47%), Query Frame = 0 

Query: 1   MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 60
           M+RIKNIEP+KPLSILC SFRDIDKYTTGFPRGDGQGHS+IFRMVKHCLPGPYTFILTAS
Sbjct: 167 MRRIKNIEPSKPLSILCHSFRDIDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYTFILTAS 226

Query: 61  KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 120
           KELPKHCIRYGTTTAKYASRKNVGVRIPDD+ICQAILEKMD+PLISTSVKSPKENEWLLD
Sbjct: 227 KELPKHCIRYGTTTAKYASRKNVGVRIPDDAICQAILEKMDNPLISTSVKSPKENEWLLD 286

Query: 121 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN 180
           PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN
Sbjct: 287 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN 346

Query: 181 IGEDIRT 187
           +GEDIRT
Sbjct: 347 LGEDIRT 353

[Close]
BLAST of Cucsat.G15684 vs. ExPASy TrEMBL
Match: A0A5A7TLP4 (YrdC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G004380 PE=3 SV=1)

HSP 1 Score: 358 bits (920), Expect = 2.67e-122
Identity = 171/176 (97.16%), Postives = 175/176 (99.43%), Query Frame = 0 

Query: 12  PLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKELPKHCIRYG 71
           PLSILC SFRDIDKYTTGFPRGDGQGHS+IFRMVKHCLPGPYTFILTASKELPKHCIRYG
Sbjct: 184 PLSILCHSFRDIDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYTFILTASKELPKHCIRYG 243

Query: 72  TTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPVVIADIYGQE 131
           TTTAKYASRKNVGVRIPDD+ICQAILEKMD+PLISTSVKSPKENEWLLDPVVIADIYGQE
Sbjct: 244 TTTAKYASRKNVGVRIPDDAICQAILEKMDNPLISTSVKSPKENEWLLDPVVIADIYGQE 303

Query: 132 GLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPNIGEDIRT 187
           GLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN+GEDIRT
Sbjct: 304 GLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPNLGEDIRT 359

[Close]
BLAST of Cucsat.G15684 vs. ExPASy TrEMBL
Match: A0A6J1DQJ1 (uncharacterized protein LOC111023411 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111023411 PE=3 SV=1)

HSP 1 Score: 345 bits (886), Expect = 7.80e-118
Identity = 166/178 (93.26%), Postives = 172/178 (96.63%), Query Frame = 0 

Query: 1   MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 60
           M+RIKNIEP KPLSILC SFRD+DKYTTGFPRGDGQGHS+IFRMVKHCLPGPYTFILTAS
Sbjct: 126 MRRIKNIEPLKPLSILCHSFRDVDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYTFILTAS 185

Query: 61  KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 120
           KELPK CIR+GTTTAKYASRKNVGVRIPDD ICQAILEKMD PLISTSVK PKENEWLLD
Sbjct: 186 KELPKPCIRFGTTTAKYASRKNVGVRIPDDIICQAILEKMDSPLISTSVKCPKENEWLLD 245

Query: 121 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDE 178
           PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGD++
Sbjct: 246 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDED 303

The following BLAST results are available for this feature:
BLAST of Cucsat.G15684 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P451034.4e-1830.18Uncharacterized protein HI_1198 OS=Haemophilus influenzae (strain ATCC 51907 / D... [more]
P0AFR59.7e-1829.59Uncharacterized protein YciO OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700... [more]
P0AFR49.7e-1829.59Uncharacterized protein YciO OS=Escherichia coli (strain K12) OX=83333 GN=yciO P... [more]
P0AFR69.7e-1829.59Uncharacterized protein YciO OS=Shigella flexneri OX=623 GN=yciO PE=3 SV=1[more]
Q9UYB21.9e-0530.58Threonylcarbamoyl-AMP synthase OS=Pyrococcus abyssi (strain GE5 / Orsay) OX=2728... [more]
BLAST of Cucsat.G15684 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004145661.15.51e-134100.00uncharacterized protein LOC101214648 isoform X2 [Cucumis sativus] >KGN58172.1 hy... [more]
XP_008450106.15.01e-13096.26PREDICTED: uncharacterized protein YciO isoform X1 [Cucumis melo][more]
TYK05316.12.27e-12996.26yrdC domain-containing protein [Cucumis melo var. makuwa][more]
XP_038877956.18.89e-12593.55uncharacterized protein YciO [Benincasa hispida][more]
KAA0042916.15.52e-12297.16yrdC domain-containing protein [Cucumis melo var. makuwa][more]
BLAST of Cucsat.G15684 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBV92.67e-134100.00YrdC-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G585350 P... [more]
A0A1S3BMX42.42e-13096.26uncharacterized protein YciO isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491794 ... [more]
A0A5D3C4N11.10e-12996.26YrdC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7TLP42.67e-12297.16YrdC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A6J1DQJ17.80e-11893.26uncharacterized protein LOC111023411 isoform X1 OS=Momordica charantia OX=3673 G... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006070YrdC-like domainPFAMPF01300Sua5_yciO_yrdCcoord: 93..285
e-value: 1.4E-45
score: 154.9
IPR006070YrdC-like domainTIGRFAMTIGR00057TIGR00057coord: 86..287
e-value: 2.2E-42
score: 142.5
IPR006070YrdC-like domainPROSITEPS51163YRDCcoord: 84..287
score: 22.898832
NoneNo IPR availableGENE3D3.90.870.10DHBP synthasecoord: 72..288
e-value: 4.6E-55
score: 187.8
NoneNo IPR availablePIRSRPIRSR004930-1PIRSR004930-1coord: 85..287
e-value: 2.9E-27
score: 93.5
NoneNo IPR availablePANTHERPTHR42828DHBP SYNTHASE RIBB-LIKE ALPHA/BETA DOMAIN-CONTAINING PROTEINcoord: 17..286
IPR017945DHBP synthase RibB-like alpha/beta domain superfamilySUPERFAMILY55821YrdC/RibBcoord: 80..287

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G15684.T14Cucsat.G15684.T14mRNA
Cucsat.G15684.T17Cucsat.G15684.T17mRNA
Cucsat.G15684.T10Cucsat.G15684.T10mRNA
Cucsat.G15684.T11Cucsat.G15684.T11mRNA
Cucsat.G15684.T12Cucsat.G15684.T12mRNA
Cucsat.G15684.T13Cucsat.G15684.T13mRNA
Cucsat.G15684.T18Cucsat.G15684.T18mRNA
Cucsat.G15684.T20Cucsat.G15684.T20mRNA
Cucsat.G15684.T22Cucsat.G15684.T22mRNA
Cucsat.G15684.T25Cucsat.G15684.T25mRNA
Cucsat.G15684.T27Cucsat.G15684.T27mRNA
Cucsat.G15684.T2Cucsat.G15684.T2mRNA
Cucsat.G15684.T1Cucsat.G15684.T1mRNA
Cucsat.G15684.T4Cucsat.G15684.T4mRNA
Cucsat.G15684.T30Cucsat.G15684.T30mRNA
Cucsat.G15684.T15Cucsat.G15684.T15mRNA
Cucsat.G15684.T16Cucsat.G15684.T16mRNA
Cucsat.G15684.T21Cucsat.G15684.T21mRNA
Cucsat.G15684.T24Cucsat.G15684.T24mRNA
Cucsat.G15684.T3Cucsat.G15684.T3mRNA
Cucsat.G15684.T8Cucsat.G15684.T8mRNA
Cucsat.G15684.T9Cucsat.G15684.T9mRNA
Cucsat.G15684.T6Cucsat.G15684.T6mRNA
Cucsat.G15684.T19Cucsat.G15684.T19mRNA
Cucsat.G15684.T23Cucsat.G15684.T23mRNA
Cucsat.G15684.T32Cucsat.G15684.T32mRNA
Cucsat.G15684.T33Cucsat.G15684.T33mRNA
Cucsat.G15684.T29Cucsat.G15684.T29mRNA
Cucsat.G15684.T26Cucsat.G15684.T26mRNA
Cucsat.G15684.T7Cucsat.G15684.T7mRNA
Cucsat.G15684.T35Cucsat.G15684.T35mRNA
Cucsat.G15684.T5Cucsat.G15684.T5mRNA
Cucsat.G15684.T31Cucsat.G15684.T31mRNA
Cucsat.G15684.T34Cucsat.G15684.T34mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003725 double-stranded RNA binding
molecular_function GO:0016740 transferase activity