Cucsat.G15684.T23 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G15684.T23
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionYrdC-like domain-containing protein
Locationctg2009: 5777833 .. 5781539 (+)
RNA-Seq ExpressionCucsat.G15684.T23
SyntenyCucsat.G15684.T23
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AATCCAATTGAAATGTGACGTGGCATTCCAGGTGGGAAGTTCTATCTATGAACTGTGCCTCCTCTCCGATCACAGCTTCTCCCCTCTCTTTTCCTTCTCAGTTCCTAATTCCGGCGGTGCACTCACGCTGGTTCCCCAATCTCCCAAATGATCATCAATGTCAAACCCGGCCTACATCCTTCTACTGCTTCTTCTCTCTCTTCCTCTCGGGCTTTCGCACCAATACGCTTCCCTTCGCCTCCATCTGCCACTCCTTTCGACGGTTTTGAAACTTCCCGCCGCCTCCAGGTCCTCGCCATGGTTGTCAAGCGGAGTCCTAAGCGCCTCAAGTACTCGGCTCCACGCTTCACCAAGGTCCTCTCCTTCCTAACTACTTCTGTGTTTTTTTTTCAGCTTCATTATACCATGCCCTCGCTCCTACTTGTTCTATATGAAACTCTTATCGCTATTGCTCCGGATAGAATATCTAGTGGTGGAGGTAGAGTTGCGACAGGTGAATTAAGCATTTACGCTGTTTTCGTCGCTTATTTATTTTTACACTCTAGATAGATAATTAGTAAATTTTGCAGGAGATTGTGTTGTGGATTTGAACTGTTGGAAACACTTCTGACTGGTTAAGATTTTCCCTTCTGCGTGTGTGCGTTTCTTGTTGGGAGAGGGTGATATTATATGAACACTACTCTACTTCCACCGTGATCATATTCCAGTTTGGGATGCTTTATTGCTAGTTTTTGTTGGGAGTTAATTCAGTTGGGAATGAAATTTGGAAATTAATGAAGTTATTAGACTTGTGTTATTGATATGCTTAAAGTTACTATGGTCTTTACCAGGAAGGGAGCTTGATATATGTCAAAGCTGAATCAGGAGAGGACGGCTGGAAATTAGACCCTATTGTTAATCTTCTAAAAGAGGGTGCAGTTGGGGTTATTCCTACTGATACCGTGTATTTCCCTCTTACTTTATTTCACTCTCACCTTTTCAGATTTTTTTATTGTTATCATTGCTGACTCTCAAGTTGAAATTGGACGCTTGAACGAATAAATTTGTTCATAGTTAGAAAGAATCATATTTTCAATTTTTGTGTCATGCCACTCAGAAATTCAGAATTTAGGTTGTATTACCTCTTTTGGGAACAAGCTTCAAACTTCTGCAATAAATTTTTGGTTTTCCATAAATATACTTGCAATATTATTGGTTCCTTAAAATTGATTGTATCTGTATGGATCTTCTGATTGACGGATGAGAGTTCTCAAGGAAATGTAGAAGGTTTAATTTTGTGATCTTAAAGTTTACAGTGATCAGGAAAGCAGCAGGATAAATTCCTTTTTTGTTCTCACATTATTTATTATGATCTTGGTGGTTCATTTCATGAGTGTTGATTTCACTGCATTTTTGTTCCCTTGTGTACGTCTTCTTTGTCTGTCTTTTTATTTTTAACGGGTATGTATGCTTGTATTTTTCAAGGTATGGAATTGTTTGTGATCTGAAGAACCCCTCAGCCATTGAACGAATGCAGAGGTTGAAGTTGTTAATTTGTTTTGCTAGAAACTGTATTTGGTTAGATACTTCAGCTTCTCTCTCCTGCTGTTAAAGTTTCTTGTTTTGTTTAATGCAGGATCAAGAATATAGAGCCTACAAAGGTATCGTTATTTTTTACAATCTCTTTTATGTGCTTTACGATAATGCTCATATGGTCCTTCAAACTGTTGAACATCAATGCTCAAATGCGTATAATAAAGTTACTGAACAAGATGGTTTATTCTACTTAGATCCCTCATTTCTGTCTTCTATACAACCCACCTTTTCATTTTTCCATTATGCTTCTTAATTTTTACTTCTAATTAACTATGCAGCCTCTGAGCATTTTGTGCCGCTCCTTCCGGGACATTGATAAATATACTACAGGGTTTCCTCGTGGTGATGGCCAAGGCCATTCAAGTATATTTCGCATGGTTAAGCATTGTCTACCTGGACCAGTGAGTGGTTCTGCTAATCCTTCCTTATGACGATAACTCCATATTATCCCTCCTTCGGATTGCATGGTGTCCCAAATGACCTCTAGTACCTTTACTTTCGTAATCATGTAGATGTGAAAAAAAAAGACATTTTCTGGTGTTGTCCTATCTTGATACATTATAGTTCGCAGTGAAACTTTCAATGTACATTGAATTCTTTAACTATAGCTATTGATTTTTGAGAGTTCTTGTGTAACAGTACACCTTCATCTTGACTGCAAGCAAAGAGCTGCCTAAACATTGTATAAGGTATGGCACGACCACTGCAAAATATGCATCAAGGAAGAATGTAGGTGTGCGCATTCCTGATGATTCAATTTGTCAAGCAATACTGGAAAAGATGGACGACCCATTGATATCCACAAGGTTAGAACAATTAATACTCTTCTAATTCTCTCCACCCTCTTAACAAATTTCTTGATTGGTTTAGGGGACTTAAGACCTTCTGGATTGATCATCTATTTTTCATGCCACAATTCCCCATGAGACAGTTTTCAATTTGGTGCAATCGACCATCACTATTATAACAATATTCTCTCCACTTTTTCTATCCAGTTCTGGATTGAGCACTGGAAGGGGAGACTGCTTGTGTTTATATTAATTGGCTTAAGATAGCTGTAATTATTGAATTCTTACAATAATGATGGGTAAATAAGTACTTCGGAAGTGATGATTTGTTCAAACTTCAATCTATACATTTGCTGTTCTTTCAGTGTCAAATCCCCGAAGGAAAATGAGTGGTTGCTCGACCCAGTTGTCATAGCTGATATCTATGGACAAGAGGTATGAATAAATCTTACAGAGGCTGTGTGATTGTTTATGCTAATTTCTGCAGTTATGCCATTTCCCCCCCTGAAAGCGGGTTGTATGCTTCAAATAGGGTCTGGATTTTGTGGTGGATGGTGGAGTTAGAGTGGCAGATCCATCCACTGTAGTAGATATGACCATCACTCCTCCAAAGATTTTGCGGCAAGGGAAGGTAATTCATTAGTCATTTCCTTTCTAGTATGCTACCCCCTAAATTATGATTACACTCATCTCTTGCAATAACGTATGGAGCAGTATGGTAATGAATAGTACTGTCATTCAGTCAAAAACAATATTTTCTATTAACTTCAGATGAAACAGAATCTGAAGTTGATCATTCATTTCTTTACCATCCTGATCCCAATGATCAATCCTCATGGAATGGAATAAGCACCATCATTTCAAGTTTCTGTTGGATTTGGATGATGAATTATTTTTCATTGTCTTCCCACTTTTTGCTCGAATGATTTGCAACGTCCAGGGAGCTAGACTGCCATGGATGGTAGCTGAAGGTGATGACGAACCAAACATAGGTGAAGATATCCGCACCTGAACTTGCCATTTTGTAGATAATCCACTGAACATATTGCATGGAAGACATGATCCAGTTGCAGTTCACAAACAAATCTGGTGGAGTTTGTACAGTGTTTGCTATTGGTATATAAACTAACACTGAAAGAGGGTGGGCCTTTCTAAGTTGAAGATCAAATGTTGCTATACTGCTTGTCTTAGAGGTTTTTTTATCAACTTGAAAATTAGATTCTCTTTTACCTACATGTAATGTAACTCATAAATATAGGCAAATGCAATCCTCATTCTAAAATTTTCTCTTAGAAGAACAGAAGAATTTACATTTTCATTTGGGGAAATTTCTAATTTGGCCCT

Coding sequence (CDS)

ATGCAGAGGATCAAGAATATAGAGCCTACAAAGCCTCTGAGCATTTTGTGCCGCTCCTTCCGGGACATTGATAAATATACTACAGGGTTTCCTCGTGGTGATGGCCAAGGCCATTCAAGTATATTTCGCATGGTTAAGCATTGTCTACCTGGACCATACACCTTCATCTTGACTGCAAGCAAAGAGCTGCCTAAACATTGTATAAGGTATGGCACGACCACTGCAAAATATGCATCAAGGAAGAATGTAGGTGTGCGCATTCCTGATGATTCAATTTGTCAAGCAATACTGGAAAAGATGGACGACCCATTGATATCCACAAGTGTCAAATCCCCGAAGGAAAATGAGTGGTTGCTCGACCCAGTTGTCATAGCTGATATCTATGGACAAGAGGGTCTGGATTTTGTGGTGGATGGTGGAGTTAGAGTGGCAGATCCATCCACTGTAGTAGATATGACCATCACTCCTCCAAAGATTTTGCGGCAAGGGAAGGGAGCTAGACTGCCATGGATGGTAGCTGAAGGTGATGACGAACCAAACATAGGTGAAGATATCCGCACCTGA

Protein sequence

MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPNIGEDIRT
Homology
[Close]
BLAST of Cucsat.G15684.T23 vs. ExPASy Swiss-Prot
Match: P45103 (Uncharacterized protein HI_1198 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=HI_1198 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.4e-18
Identity = 51/169 (30.18%), Postives = 93/169 (55.03%), Query Frame = 0 

Query: 4   IKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKEL 63
           I+ +      +++C    ++  Y         + +++ +R++K+  PG YTFILTA+KEL
Sbjct: 56  IRKLPEGHNFTLVCSDLSELSTY--------ARVNNTAYRLIKNNTPGRYTFILTATKEL 115

Query: 64  PKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSP-KENEWLLDPV 123
           P+  +         + RK +G+R+PD+ I   +L  + +P++S S+  P +E+    DP 
Sbjct: 116 PRRLMT--------SKRKTIGLRVPDNKIALDLLSALGEPILSCSLMLPNEEHTTQSDPE 175

Query: 124 VIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWM 172
            I D   +  +D ++ GG    +P+TVVD+T   P ILR+G G+  P++
Sbjct: 176 EIRDRL-EHQVDLIIHGGYLGQEPTTVVDLTEESPVILREGSGSTAPFI 207

[Close]
BLAST of Cucsat.G15684.T23 vs. ExPASy Swiss-Prot
Match: P0AFR5 (Uncharacterized protein YciO OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=yciO PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 9.7e-18
Identity = 50/169 (29.59%), Postives = 90/169 (53.25%), Query Frame = 0 

Query: 3   RIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKE 62
           RI+ +      +++CR   ++  Y+           +  FR++K+  PG YTFIL  +KE
Sbjct: 55  RIRQLPDGHNFTLMCRDLSELSTYSF--------VDNVAFRLMKNNTPGNYTFILKGTKE 114

Query: 63  LPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPV 122
           +P+  ++          RK +G+R+P + I QA+LE + +P++STS+  P       DP 
Sbjct: 115 VPRRLLQ--------EKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPE 174

Query: 123 VIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWM 172
            I D   ++ +D ++ GG     P+TV+D+T   P ++R+G G   P++
Sbjct: 175 EIKDRL-EKQVDLIIHGGYLGQKPTTVIDLTDDTPVVVREGVGDVKPFL 206

[Close]
BLAST of Cucsat.G15684.T23 vs. ExPASy Swiss-Prot
Match: P0AFR4 (Uncharacterized protein YciO OS=Escherichia coli (strain K12) OX=83333 GN=yciO PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 9.7e-18
Identity = 50/169 (29.59%), Postives = 90/169 (53.25%), Query Frame = 0 

Query: 3   RIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKE 62
           RI+ +      +++CR   ++  Y+           +  FR++K+  PG YTFIL  +KE
Sbjct: 55  RIRQLPDGHNFTLMCRDLSELSTYSF--------VDNVAFRLMKNNTPGNYTFILKGTKE 114

Query: 63  LPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPV 122
           +P+  ++          RK +G+R+P + I QA+LE + +P++STS+  P       DP 
Sbjct: 115 VPRRLLQ--------EKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPE 174

Query: 123 VIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWM 172
            I D   ++ +D ++ GG     P+TV+D+T   P ++R+G G   P++
Sbjct: 175 EIKDRL-EKQVDLIIHGGYLGQKPTTVIDLTDDTPVVVREGVGDVKPFL 206

[Close]
BLAST of Cucsat.G15684.T23 vs. ExPASy Swiss-Prot
Match: P0AFR6 (Uncharacterized protein YciO OS=Shigella flexneri OX=623 GN=yciO PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 9.7e-18
Identity = 50/169 (29.59%), Postives = 90/169 (53.25%), Query Frame = 0 

Query: 3   RIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKE 62
           RI+ +      +++CR   ++  Y+           +  FR++K+  PG YTFIL  +KE
Sbjct: 55  RIRQLPDGHNFTLMCRDLSELSTYSF--------VDNVAFRLMKNNTPGNYTFILKGTKE 114

Query: 63  LPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPV 122
           +P+  ++          RK +G+R+P + I QA+LE + +P++STS+  P       DP 
Sbjct: 115 VPRRLLQ--------EKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPE 174

Query: 123 VIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWM 172
            I D   ++ +D ++ GG     P+TV+D+T   P ++R+G G   P++
Sbjct: 175 EIKDRL-EKQVDLIIHGGYLGQKPTTVIDLTDDTPVVVREGVGDVKPFL 206

[Close]
BLAST of Cucsat.G15684.T23 vs. ExPASy Swiss-Prot
Match: Q9UYB2 (Threonylcarbamoyl-AMP synthase OS=Pyrococcus abyssi (strain GE5 / Orsay) OX=272844 GN=sua5 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.9e-05
Identity = 37/121 (30.58%), Postives = 58/121 (47.93%), Query Frame = 0 

Query: 44  MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDP 103
           + K   PGP T +L  S+ +P+  I  G  T        V VR+P   I   ++E  + P
Sbjct: 88  LAKRFWPGPLTLVLPKSEVVPR-VITGGLDT--------VAVRMPAHEIALKLIELSERP 147

Query: 104 LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGG-VRVADPSTVVDMTITPPKILRQ 163
           + + S     +        V  D YG+  ++ ++DGG  R+   STV+D+T  PP +LR 
Sbjct: 148 IAAPSANISGKPSPTSAHHVAEDFYGK--IECIIDGGETRIGVESTVIDLTEWPPVLLRP 197

[Close]
BLAST of Cucsat.G15684.T23 vs. NCBI nr
Match: XP_004145661.1 (uncharacterized protein LOC101214648 isoform X2 [Cucumis sativus] >KGN58172.1 hypothetical protein Csa_017456 [Cucumis sativus])

HSP 1 Score: 387 bits (994), Expect = 5.51e-134
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0 

Query: 1   MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 60
           MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS
Sbjct: 123 MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 182

Query: 61  KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 120
           KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD
Sbjct: 183 KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 242

Query: 121 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN 180
           PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN
Sbjct: 243 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN 302

Query: 181 IGEDIRT 187
           IGEDIRT
Sbjct: 303 IGEDIRT 309

[Close]
BLAST of Cucsat.G15684.T23 vs. NCBI nr
Match: XP_008450106.1 (PREDICTED: uncharacterized protein YciO isoform X1 [Cucumis melo])

HSP 1 Score: 377 bits (968), Expect = 5.01e-130
Identity = 180/187 (96.26%), Postives = 186/187 (99.47%), Query Frame = 0 

Query: 1   MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 60
           M+RIKNIEP+KPLSILC SFRDIDKYTTGFPRGDGQGHS+IFRMVKHCLPGPYTFILTAS
Sbjct: 123 MRRIKNIEPSKPLSILCHSFRDIDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYTFILTAS 182

Query: 61  KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 120
           KELPKHCIRYGTTTAKYASRKNVGVRIPDD+ICQAILEKMD+PLISTSVKSPKENEWLLD
Sbjct: 183 KELPKHCIRYGTTTAKYASRKNVGVRIPDDAICQAILEKMDNPLISTSVKSPKENEWLLD 242

Query: 121 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN 180
           PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN
Sbjct: 243 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN 302

Query: 181 IGEDIRT 187
           +GEDIRT
Sbjct: 303 LGEDIRT 309

[Close]
BLAST of Cucsat.G15684.T23 vs. NCBI nr
Match: TYK05316.1 (yrdC domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 377 bits (968), Expect = 2.27e-129
Identity = 180/187 (96.26%), Postives = 186/187 (99.47%), Query Frame = 0 

Query: 1   MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 60
           M+RIKNIEP+KPLSILC SFRDIDKYTTGFPRGDGQGHS+IFRMVKHCLPGPYTFILTAS
Sbjct: 167 MRRIKNIEPSKPLSILCHSFRDIDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYTFILTAS 226

Query: 61  KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 120
           KELPKHCIRYGTTTAKYASRKNVGVRIPDD+ICQAILEKMD+PLISTSVKSPKENEWLLD
Sbjct: 227 KELPKHCIRYGTTTAKYASRKNVGVRIPDDAICQAILEKMDNPLISTSVKSPKENEWLLD 286

Query: 121 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN 180
           PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN
Sbjct: 287 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN 346

Query: 181 IGEDIRT 187
           +GEDIRT
Sbjct: 347 LGEDIRT 353

[Close]
BLAST of Cucsat.G15684.T23 vs. NCBI nr
Match: XP_038877956.1 (uncharacterized protein YciO [Benincasa hispida])

HSP 1 Score: 364 bits (934), Expect = 8.89e-125
Identity = 174/186 (93.55%), Postives = 182/186 (97.85%), Query Frame = 0 

Query: 1   MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 60
           ++RIKNIEP+KPLSILC SFRDIDKYTTGFPRGDGQGHS+IFRMVKHCLPGPYTFILTAS
Sbjct: 123 IRRIKNIEPSKPLSILCHSFRDIDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYTFILTAS 182

Query: 61  KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 120
           KELPKHCIRYGTTTAKYASRKNVGVRIPDD+ICQAILEKMD PLISTSVK+ KENEWLLD
Sbjct: 183 KELPKHCIRYGTTTAKYASRKNVGVRIPDDAICQAILEKMDAPLISTSVKNLKENEWLLD 242

Query: 121 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN 180
           PVVIADIYG+EGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEP 
Sbjct: 243 PVVIADIYGEEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPT 302

Query: 181 IGEDIR 186
           +GEDIR
Sbjct: 303 VGEDIR 308

[Close]
BLAST of Cucsat.G15684.T23 vs. NCBI nr
Match: KAA0042916.1 (yrdC domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 358 bits (920), Expect = 5.52e-122
Identity = 171/176 (97.16%), Postives = 175/176 (99.43%), Query Frame = 0 

Query: 12  PLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKELPKHCIRYG 71
           PLSILC SFRDIDKYTTGFPRGDGQGHS+IFRMVKHCLPGPYTFILTASKELPKHCIRYG
Sbjct: 184 PLSILCHSFRDIDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYTFILTASKELPKHCIRYG 243

Query: 72  TTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPVVIADIYGQE 131
           TTTAKYASRKNVGVRIPDD+ICQAILEKMD+PLISTSVKSPKENEWLLDPVVIADIYGQE
Sbjct: 244 TTTAKYASRKNVGVRIPDDAICQAILEKMDNPLISTSVKSPKENEWLLDPVVIADIYGQE 303

Query: 132 GLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPNIGEDIRT 187
           GLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN+GEDIRT
Sbjct: 304 GLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPNLGEDIRT 359

[Close]
BLAST of Cucsat.G15684.T23 vs. ExPASy TrEMBL
Match: A0A0A0LBV9 (YrdC-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G585350 PE=3 SV=1)

HSP 1 Score: 387 bits (994), Expect = 2.67e-134
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0 

Query: 1   MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 60
           MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS
Sbjct: 123 MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 182

Query: 61  KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 120
           KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD
Sbjct: 183 KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 242

Query: 121 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN 180
           PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN
Sbjct: 243 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN 302

Query: 181 IGEDIRT 187
           IGEDIRT
Sbjct: 303 IGEDIRT 309

[Close]
BLAST of Cucsat.G15684.T23 vs. ExPASy TrEMBL
Match: A0A1S3BMX4 (uncharacterized protein YciO isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491794 PE=3 SV=1)

HSP 1 Score: 377 bits (968), Expect = 2.42e-130
Identity = 180/187 (96.26%), Postives = 186/187 (99.47%), Query Frame = 0 

Query: 1   MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 60
           M+RIKNIEP+KPLSILC SFRDIDKYTTGFPRGDGQGHS+IFRMVKHCLPGPYTFILTAS
Sbjct: 123 MRRIKNIEPSKPLSILCHSFRDIDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYTFILTAS 182

Query: 61  KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 120
           KELPKHCIRYGTTTAKYASRKNVGVRIPDD+ICQAILEKMD+PLISTSVKSPKENEWLLD
Sbjct: 183 KELPKHCIRYGTTTAKYASRKNVGVRIPDDAICQAILEKMDNPLISTSVKSPKENEWLLD 242

Query: 121 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN 180
           PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN
Sbjct: 243 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN 302

Query: 181 IGEDIRT 187
           +GEDIRT
Sbjct: 303 LGEDIRT 309

[Close]
BLAST of Cucsat.G15684.T23 vs. ExPASy TrEMBL
Match: A0A5D3C4N1 (YrdC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001410 PE=3 SV=1)

HSP 1 Score: 377 bits (968), Expect = 1.10e-129
Identity = 180/187 (96.26%), Postives = 186/187 (99.47%), Query Frame = 0 

Query: 1   MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 60
           M+RIKNIEP+KPLSILC SFRDIDKYTTGFPRGDGQGHS+IFRMVKHCLPGPYTFILTAS
Sbjct: 167 MRRIKNIEPSKPLSILCHSFRDIDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYTFILTAS 226

Query: 61  KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 120
           KELPKHCIRYGTTTAKYASRKNVGVRIPDD+ICQAILEKMD+PLISTSVKSPKENEWLLD
Sbjct: 227 KELPKHCIRYGTTTAKYASRKNVGVRIPDDAICQAILEKMDNPLISTSVKSPKENEWLLD 286

Query: 121 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN 180
           PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN
Sbjct: 287 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN 346

Query: 181 IGEDIRT 187
           +GEDIRT
Sbjct: 347 LGEDIRT 353

[Close]
BLAST of Cucsat.G15684.T23 vs. ExPASy TrEMBL
Match: A0A5A7TLP4 (YrdC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G004380 PE=3 SV=1)

HSP 1 Score: 358 bits (920), Expect = 2.67e-122
Identity = 171/176 (97.16%), Postives = 175/176 (99.43%), Query Frame = 0 

Query: 12  PLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKELPKHCIRYG 71
           PLSILC SFRDIDKYTTGFPRGDGQGHS+IFRMVKHCLPGPYTFILTASKELPKHCIRYG
Sbjct: 184 PLSILCHSFRDIDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYTFILTASKELPKHCIRYG 243

Query: 72  TTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPVVIADIYGQE 131
           TTTAKYASRKNVGVRIPDD+ICQAILEKMD+PLISTSVKSPKENEWLLDPVVIADIYGQE
Sbjct: 244 TTTAKYASRKNVGVRIPDDAICQAILEKMDNPLISTSVKSPKENEWLLDPVVIADIYGQE 303

Query: 132 GLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPNIGEDIRT 187
           GLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPN+GEDIRT
Sbjct: 304 GLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPNLGEDIRT 359

[Close]
BLAST of Cucsat.G15684.T23 vs. ExPASy TrEMBL
Match: A0A6J1DQJ1 (uncharacterized protein LOC111023411 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111023411 PE=3 SV=1)

HSP 1 Score: 345 bits (886), Expect = 7.80e-118
Identity = 166/178 (93.26%), Postives = 172/178 (96.63%), Query Frame = 0 

Query: 1   MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 60
           M+RIKNIEP KPLSILC SFRD+DKYTTGFPRGDGQGHS+IFRMVKHCLPGPYTFILTAS
Sbjct: 126 MRRIKNIEPLKPLSILCHSFRDVDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYTFILTAS 185

Query: 61  KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 120
           KELPK CIR+GTTTAKYASRKNVGVRIPDD ICQAILEKMD PLISTSVK PKENEWLLD
Sbjct: 186 KELPKPCIRFGTTTAKYASRKNVGVRIPDDIICQAILEKMDSPLISTSVKCPKENEWLLD 245

Query: 121 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDE 178
           PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGD++
Sbjct: 246 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDED 303

The following BLAST results are available for this feature:
BLAST of Cucsat.G15684.T23 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P451034.4e-1830.18Uncharacterized protein HI_1198 OS=Haemophilus influenzae (strain ATCC 51907 / D... [more]
P0AFR59.7e-1829.59Uncharacterized protein YciO OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700... [more]
P0AFR49.7e-1829.59Uncharacterized protein YciO OS=Escherichia coli (strain K12) OX=83333 GN=yciO P... [more]
P0AFR69.7e-1829.59Uncharacterized protein YciO OS=Shigella flexneri OX=623 GN=yciO PE=3 SV=1[more]
Q9UYB21.9e-0530.58Threonylcarbamoyl-AMP synthase OS=Pyrococcus abyssi (strain GE5 / Orsay) OX=2728... [more]
BLAST of Cucsat.G15684.T23 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004145661.15.51e-134100.00uncharacterized protein LOC101214648 isoform X2 [Cucumis sativus] >KGN58172.1 hy... [more]
XP_008450106.15.01e-13096.26PREDICTED: uncharacterized protein YciO isoform X1 [Cucumis melo][more]
TYK05316.12.27e-12996.26yrdC domain-containing protein [Cucumis melo var. makuwa][more]
XP_038877956.18.89e-12593.55uncharacterized protein YciO [Benincasa hispida][more]
KAA0042916.15.52e-12297.16yrdC domain-containing protein [Cucumis melo var. makuwa][more]
BLAST of Cucsat.G15684.T23 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBV92.67e-134100.00YrdC-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G585350 P... [more]
A0A1S3BMX42.42e-13096.26uncharacterized protein YciO isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491794 ... [more]
A0A5D3C4N11.10e-12996.26YrdC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7TLP42.67e-12297.16YrdC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A6J1DQJ17.80e-11893.26uncharacterized protein LOC111023411 isoform X1 OS=Momordica charantia OX=3673 G... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.870.10DHBP synthasecoord: 1..170
e-value: 1.1E-36
score: 127.7
NoneNo IPR availablePIRSRPIRSR004930-1PIRSR004930-1coord: 4..164
e-value: 4.9E-14
score: 50.0
NoneNo IPR availablePANTHERPTHR42828DHBP SYNTHASE RIBB-LIKE ALPHA/BETA DOMAIN-CONTAINING PROTEINcoord: 2..179
IPR006070YrdC-like domainPFAMPF01300Sua5_yciO_yrdCcoord: 3..163
e-value: 9.2E-31
score: 106.7
IPR006070YrdC-like domainPROSITEPS51163YRDCcoord: 1..165
score: 15.951627
IPR017945DHBP synthase RibB-like alpha/beta domain superfamilySUPERFAMILY55821YrdC/RibBcoord: 3..165

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G15684Cucsat.G15684gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G15684.T23.E1Cucsat.G15684.T23.E1exon
Cucsat.G15684.T23.E2Cucsat.G15684.T23.E2exon
Cucsat.G15684.T23.E3Cucsat.G15684.T23.E3exon
Cucsat.G15684.T23.E4Cucsat.G15684.T23.E4exon
Cucsat.G15684.T23.E5Cucsat.G15684.T23.E5exon
Cucsat.G15684.T23.E6Cucsat.G15684.T23.E6exon
Cucsat.G15684.T23.E7Cucsat.G15684.T23.E7exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G15684.T23.C1Cucsat.G15684.T23.C1CDS
Cucsat.G15684.T23.C2Cucsat.G15684.T23.C2CDS
Cucsat.G15684.T23.C3Cucsat.G15684.T23.C3CDS
Cucsat.G15684.T23.C4Cucsat.G15684.T23.C4CDS
Cucsat.G15684.T23.C5Cucsat.G15684.T23.C5CDS
Cucsat.G15684.T23.C6Cucsat.G15684.T23.C6CDS
Cucsat.G15684.T23.C7Cucsat.G15684.T23.C7CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G15684.T23Cucsat.G15684.T23-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003725 double-stranded RNA binding
molecular_function GO:0016740 transferase activity