Cucsat.G15684.T2 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G15684.T2
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionYrdC-like domain-containing protein
Locationctg2009: 5777766 .. 5781551 (+)
RNA-Seq ExpressionCucsat.G15684.T2
SyntenyCucsat.G15684.T2
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAGTTGTAGAAAGTGGAAGATTGCATGCCTATTTATTTATTTATTTATGTAATGATGAAAAAAGAAAATCCAATTGAAATGTGACGTGGCATTCCAGGTGGGAAGTTCTATCTATGAACTGTGCCTCCTCTCCGATCACAGCTTCTCCCCTCTCTTTTCCTTCTCAGTTCCTAATTCCGGCGGTGCACTCACGCTGGTTCCCCAATCTCCCAAATGATCATCAATGTCAAACCCGGCCTACATCCTTCTACTGCTTCTTCTCTCTCTTCCTCTCGGGCTTTCGCACCAATACGCTTCCCTTCGCCTCCATCTGCCACTCCTTTCGACGGTTTTGAAACTTCCCGCCGCCTCCAGGTCCTCGCCATGGTTGTCAAGCGGAGTCCTAAGCGCCTCAAGTACTCGGCTCCACGCTTCACCAAGGTCCTCTCCTTCCTAACTACTTCTGTGTTTTTTTTTCAGCTTCATTATACCATGCCCTCGCTCCTACTTGTTCTATATGAAACTCTTATCGCTATTGCTCCGGATAGAATATCTAGTGGTGGAGGTAGAGTTGCGACAGGTGAATTAAGCATTTACGCTGTTTTCGTCGCTTATTTATTTTTACACTCTAGATAGATAATTAGTAAATTTTGCAGGAGATTGTGTTGTGGATTTGAACTGTTGGAAACACTTCTGACTGGTTAAGATTTTCCCTTCTGCGTGTGTGCGTTTCTTGTTGGGAGAGGGTGATATTATATGAACACTACTCTACTTCCACCGTGATCATATTCCAGTTTGGGATGCTTTATTGCTAGTTTTTGTTGGGAGTTAATTCAGTTGGGAATGAAATTTGGAAATTAATGAAGTTATTAGACTTGTGTTATTGATATGCTTAAAGTTACTATGGTCTTTACCAGGAAGGGAGCTTGATATATGTCAAAGCTGAATCAGGAGAGGACGGCTGGAAATTAGACCCTATTGTTAATCTTCTAAAAGAGGGTGCAGTTGGGGTTATTCCTACTGATACCGTGTATTTCCCTCTTACTTTATTTCACTCTCACCTTTTCAGATTTTTTTATTGTTATCATTGCTGACTCTCAAGTTGAAATTGGACGCTTGAACGAATAAATTTGTTCATAGTTAGAAAGAATCATATTTTCAATTTTTGTGTCATGCCACTCAGAAATTCAGAATTTAGGTTGTATTACCTCTTTTGGGAACAAGCTTCAAACTTCTGCAATAAATTTTTGGTTTTCCATAAATATACTTGCAATATTATTGGTTCCTTAAAATTGATTGTATCTGTATGGATCTTCTGATTGACGGATGAGAGTTCTCAAGGAAATGTAGAAGGTTTAATTTTGTGATCTTAAAGTTTACAGTGATCAGGAAAGCAGCAGGATAAATTCCTTTTTTGTTCTCACATTATTTATTATGATCTTGGTGGTTCATTTCATGAGTGTTGATTTCACTGCATTTTTGTTCCCTTGTGTACGTCTTCTTTGTCTGTCTTTTTATTTTTAACGGGTATGTATGCTTGTATTTTTCAAGGTATGGAATTGTTTGTGATCTGAAGAACCCCTCAGCCATTGAACGAATGCAGAGGTTGAAGTTGTTAATTTGTTTTGCTAGAAACTGTATTTGGTTAGATACTTCAGCTTCTCTCTCCTGCTGTTAAAGTTTCTTGTTTTGTTTAATGCAGGATCAAGAATATAGAGCCTACAAAGGTATCGTTATTTTTTACAATCTCTTTTATGTGCTTTACGATAATGCTCATATGGTCCTTCAAACTGTTGAACATCAATGCTCAAATGCGTATAATAAAGTTACTGAACAAGATGGTTTATTCTACTTAGATCCCTCATTTCTGTCTTCTATACAACCCACCTTTTCATTTTTCCATTATGCTTCTTAATTTTTACTTCTAATTAACTATGCAGCCTCTGAGCATTTTGTGCCGCTCCTTCCGGGACATTGATAAATATACTACAGGGTTTCCTCGTGGTGATGGCCAAGGCCATTCAAGTATATTTCGCATGGTTAAGCATTGTCTACCTGGACCAGTGAGTGGTTCTGCTAATCCTTCCTTATGACGATAACTCCATATTATCCCTCCTTCGGATTGCATGGTGTCCCAAATGACCTCTAGTACCTTTACTTTCGTAATCATGTAGATGTGAAAAAAAAAGACATTTTCTGGTGTTGTCCTATCTTGATACATTATAGTTCGCAGTGAAACTTTCAATGTACATTGAATTCTTTAACTATAGCTATTGATTTTTGAGAGTTCTTGTGTAACAGTACACCTTCATCTTGACTGCAAGCAAAGAGCTGCCTAAACATTGTATAAGGTATGGCACGACCACTGCAAAATATGCATCAAGGAAGAATGTAGGTGTGCGCATTCCTGATGATTCAATTTGTCAAGCAATACTGGAAAAGATGGACGACCCATTGATATCCACAAGGTTAGAACAATTAATACTCTTCTAATTCTCTCCACCCTCTTAACAAATTTCTTGATTGGTTTAGGGGACTTAAGACCTTCTGGATTGATCATCTATTTTTCATGCCACAATTCCCCATGAGACAGTTTTCAATTTGGTGCAATCGACCATCACTATTATAACAATATTCTCTCCACTTTTTCTATCCAGTTCTGGATTGAGCACTGGAAGGGGAGACTGCTTGTGTTTATATTAATTGGCTTAAGATAGCTGTAATTATTGAATTCTTACAATAATGATGGGTAAATAAGTACTTCGGAAGTGATGATTTGTTCAAACTTCAATCTATACATTTGCTGTTCTTTCAGTGTCAAATCCCCGAAGGAAAATGAGTGGTTGCTCGACCCAGTTGTCATAGCTGATATCTATGGACAAGAGGTATGAATAAATCTTACAGAGGCTGTGTGATTGTTTATGCTAATTTCTGCAGTTATGCCATTTCCCCCCCTGAAAGCGGGTTGTATGCTTCAAATAGGGTCTGGATTTTGTGGTGGATGGTGGAGTTAGAGTGGCAGATCCATCCACTGTAGTAGATATGACCATCACTCCTCCAAAGATTTTGCGGCAAGGGAAGGTAATTCATTAGTCATTTCCTTTCTAGTATGCTACCCCCTAAATTATGATTACACTCATCTCTTGCAATAACGTATGGAGCAGTATGGTAATGAATAGTACTGTCATTCAGTCAAAAACAATATTTTCTATTAACTTCAGATGAAACAGAATCTGAAGTTGATCATTCATTTCTTTACCATCCTGATCCCAATGATCAATCCTCATGGAATGGAATAAGCACCATCATTTCAAGTTTCTGTTGGATTTGGATGATGAATTATTTTTCATTGTCTTCCCACTTTTTGCTCGAATGATTTGCAACGTCCAGGGAGCTAGACTGCCATGGATGGTAGCTGAAGGTGATGACGAACCAAACATAGGTGAAGATATCCGCACCTGAACTTGCCATTTTGTAGATAATCCACTGAACATATTGCATGGAAGACATGATCCAGTTGCAGTTCACAAACAAATCTGGTGGAGTTTGTACAGTGTTTGCTATTGGTATATAAACTAACACTGAAAGAGGGTGGGCCTTTCTAAGTTGAAGATCAAATGTTGCTATACTGCTTGTCTTAGAGGTTTTTTTATCAACTTGAAAATTAGATTCTCTTTTACCTACATGTAATGTAACTCATAAATATAGGCAAATGCAATCCTCATTCTAAAATTTTCTCTTAGAAGAACAGAAGAATTTACATTTTCATTTGGGGAAATTTCTAATTTGGCCCTTATTGTTCCAAT

Coding sequence (CDS)

ATGGTTAAGCATTGTCTACCTGGACCATACACCTTCATCTTGACTGCAAGCAAAGAGCTGCCTAAACATTGTATAAGGTATGGCACGACCACTGCAAAATATGCATCAAGGAAGAATGTAGGTGTGCGCATTCCTGATGATTCAATTTGTCAAGCAATACTGGAAAAGATGGACGACCCATTGATATCCACAAGTGTCAAATCCCCGAAGGAAAATGAGTGGTTGCTCGACCCAGTTGTCATAGCTGATATCTATGGACAAGAGGGTCTGGATTTTGTGGTGGATGGTGGAGTTAGAGTGGCAGATCCATCCACTGTAGTAGATATGACCATCACTCCTCCAAAGATTTTGCGGCAAGGGAAGGGAGCTAGACTGCCATGGATGGTAGCTGAAGGTGATGACGAACCAAACATAGGTGAAGATATCCGCACCTGA

Protein sequence

MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKGARLPWMVAEGDDEPNIGEDIRT
Homology
[Close]
BLAST of Cucsat.G15684.T2 vs. ExPASy Swiss-Prot
Match: P45103 (Uncharacterized protein HI_1198 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=HI_1198 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.1e-16
Identity = 47/129 (36.43%), Postives = 77/129 (59.69%), Query Frame = 0 

Query: 1   MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDP 60
           ++K+  PG YTFILTA+KELP+  +         + RK +G+R+PD+ I   +L  + +P
Sbjct: 88  LIKNNTPGRYTFILTATKELPRRLMT--------SKRKTIGLRVPDNKIALDLLSALGEP 147

Query: 61  LISTSVKSP-KENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQ 120
           ++S S+  P +E+    DP  I D   +  +D ++ GG    +P+TVVD+T   P ILR+
Sbjct: 148 ILSCSLMLPNEEHTTQSDPEEIRDRL-EHQVDLIIHGGYLGQEPTTVVDLTEESPVILRE 207

Query: 121 GKGARLPWM 129
           G G+  P++
Sbjct: 208 GSGSTAPFI 207

[Close]
BLAST of Cucsat.G15684.T2 vs. ExPASy Swiss-Prot
Match: P0AFR5 (Uncharacterized protein YciO OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=yciO PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.9e-15
Identity = 43/128 (33.59%), Postives = 74/128 (57.81%), Query Frame = 0 

Query: 1   MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDP 60
           ++K+  PG YTFIL  +KE+P+  ++          RK +G+R+P + I QA+LE + +P
Sbjct: 88  LMKNNTPGNYTFILKGTKEVPRRLLQ--------EKRKTIGMRVPSNPIAQALLEALGEP 147

Query: 61  LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG 120
           ++STS+  P       DP  I D   ++ +D ++ GG     P+TV+D+T   P ++R+G
Sbjct: 148 MLSTSLMLPGSEFTESDPEEIKDRL-EKQVDLIIHGGYLGQKPTTVIDLTDDTPVVVREG 206

Query: 121 KGARLPWM 129
            G   P++
Sbjct: 208 VGDVKPFL 206

[Close]
BLAST of Cucsat.G15684.T2 vs. ExPASy Swiss-Prot
Match: P0AFR4 (Uncharacterized protein YciO OS=Escherichia coli (strain K12) OX=83333 GN=yciO PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.9e-15
Identity = 43/128 (33.59%), Postives = 74/128 (57.81%), Query Frame = 0 

Query: 1   MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDP 60
           ++K+  PG YTFIL  +KE+P+  ++          RK +G+R+P + I QA+LE + +P
Sbjct: 88  LMKNNTPGNYTFILKGTKEVPRRLLQ--------EKRKTIGMRVPSNPIAQALLEALGEP 147

Query: 61  LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG 120
           ++STS+  P       DP  I D   ++ +D ++ GG     P+TV+D+T   P ++R+G
Sbjct: 148 MLSTSLMLPGSEFTESDPEEIKDRL-EKQVDLIIHGGYLGQKPTTVIDLTDDTPVVVREG 206

Query: 121 KGARLPWM 129
            G   P++
Sbjct: 208 VGDVKPFL 206

[Close]
BLAST of Cucsat.G15684.T2 vs. ExPASy Swiss-Prot
Match: P0AFR6 (Uncharacterized protein YciO OS=Shigella flexneri OX=623 GN=yciO PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.9e-15
Identity = 43/128 (33.59%), Postives = 74/128 (57.81%), Query Frame = 0 

Query: 1   MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDP 60
           ++K+  PG YTFIL  +KE+P+  ++          RK +G+R+P + I QA+LE + +P
Sbjct: 88  LMKNNTPGNYTFILKGTKEVPRRLLQ--------EKRKTIGMRVPSNPIAQALLEALGEP 147

Query: 61  LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG 120
           ++STS+  P       DP  I D   ++ +D ++ GG     P+TV+D+T   P ++R+G
Sbjct: 148 MLSTSLMLPGSEFTESDPEEIKDRL-EKQVDLIIHGGYLGQKPTTVIDLTDDTPVVVREG 206

Query: 121 KGARLPWM 129
            G   P++
Sbjct: 208 VGDVKPFL 206

[Close]
BLAST of Cucsat.G15684.T2 vs. ExPASy Swiss-Prot
Match: Q9UYB2 (Threonylcarbamoyl-AMP synthase OS=Pyrococcus abyssi (strain GE5 / Orsay) OX=272844 GN=sua5 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.9e-05
Identity = 37/121 (30.58%), Postives = 58/121 (47.93%), Query Frame = 0 

Query: 1   MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDP 60
           + K   PGP T +L  S+ +P+  I  G  T        V VR+P   I   ++E  + P
Sbjct: 88  LAKRFWPGPLTLVLPKSEVVPR-VITGGLDT--------VAVRMPAHEIALKLIELSERP 147

Query: 61  LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGG-VRVADPSTVVDMTITPPKILRQ 120
           + + S     +        V  D YG+  ++ ++DGG  R+   STV+D+T  PP +LR 
Sbjct: 148 IAAPSANISGKPSPTSAHHVAEDFYGK--IECIIDGGETRIGVESTVIDLTEWPPVLLRP 197

[Close]
BLAST of Cucsat.G15684.T2 vs. NCBI nr
Match: XP_004145661.1 (uncharacterized protein LOC101214648 isoform X2 [Cucumis sativus] >KGN58172.1 hypothetical protein Csa_017456 [Cucumis sativus])

HSP 1 Score: 298 bits (764), Expect = 9.23e-100
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 1   MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDP 60
           MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDP
Sbjct: 166 MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDP 225

Query: 61  LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG 120
           LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG
Sbjct: 226 LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG 285

Query: 121 KGARLPWMVAEGDDEPNIGEDIRT 144
           KGARLPWMVAEGDDEPNIGEDIRT
Sbjct: 286 KGARLPWMVAEGDDEPNIGEDIRT 309

[Close]
BLAST of Cucsat.G15684.T2 vs. NCBI nr
Match: XP_008450106.1 (PREDICTED: uncharacterized protein YciO isoform X1 [Cucumis melo])

HSP 1 Score: 295 bits (754), Expect = 3.05e-98
Identity = 141/144 (97.92%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 1   MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDP 60
           MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDD+ICQAILEKMD+P
Sbjct: 166 MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDAICQAILEKMDNP 225

Query: 61  LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG 120
           LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG
Sbjct: 226 LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG 285

Query: 121 KGARLPWMVAEGDDEPNIGEDIRT 144
           KGARLPWMVAEGDDEPN+GEDIRT
Sbjct: 286 KGARLPWMVAEGDDEPNLGEDIRT 309

[Close]
BLAST of Cucsat.G15684.T2 vs. NCBI nr
Match: TYK05316.1 (yrdC domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 295 bits (754), Expect = 1.27e-97
Identity = 141/144 (97.92%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 1   MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDP 60
           MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDD+ICQAILEKMD+P
Sbjct: 210 MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDAICQAILEKMDNP 269

Query: 61  LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG 120
           LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG
Sbjct: 270 LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG 329

Query: 121 KGARLPWMVAEGDDEPNIGEDIRT 144
           KGARLPWMVAEGDDEPN+GEDIRT
Sbjct: 330 KGARLPWMVAEGDDEPNLGEDIRT 353

[Close]
BLAST of Cucsat.G15684.T2 vs. NCBI nr
Match: KAA0042916.1 (yrdC domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 295 bits (754), Expect = 1.53e-97
Identity = 141/144 (97.92%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 1   MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDP 60
           MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDD+ICQAILEKMD+P
Sbjct: 216 MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDAICQAILEKMDNP 275

Query: 61  LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG 120
           LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG
Sbjct: 276 LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG 335

Query: 121 KGARLPWMVAEGDDEPNIGEDIRT 144
           KGARLPWMVAEGDDEPN+GEDIRT
Sbjct: 336 KGARLPWMVAEGDDEPNLGEDIRT 359

[Close]
BLAST of Cucsat.G15684.T2 vs. NCBI nr
Match: XP_038877956.1 (uncharacterized protein YciO [Benincasa hispida])

HSP 1 Score: 283 bits (724), Expect = 1.30e-93
Identity = 136/143 (95.10%), Postives = 140/143 (97.90%), Query Frame = 0 

Query: 1   MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDP 60
           MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDD+ICQAILEKMD P
Sbjct: 166 MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDAICQAILEKMDAP 225

Query: 61  LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG 120
           LISTSVK+ KENEWLLDPVVIADIYG+EGLDFVVDGGVRVADPSTVVDMTITPPKILRQG
Sbjct: 226 LISTSVKNLKENEWLLDPVVIADIYGEEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG 285

Query: 121 KGARLPWMVAEGDDEPNIGEDIR 143
           KGARLPWMVAEGDDEP +GEDIR
Sbjct: 286 KGARLPWMVAEGDDEPTVGEDIR 308

[Close]
BLAST of Cucsat.G15684.T2 vs. ExPASy TrEMBL
Match: A0A0A0LBV9 (YrdC-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G585350 PE=3 SV=1)

HSP 1 Score: 298 bits (764), Expect = 4.47e-100
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 1   MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDP 60
           MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDP
Sbjct: 166 MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDP 225

Query: 61  LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG 120
           LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG
Sbjct: 226 LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG 285

Query: 121 KGARLPWMVAEGDDEPNIGEDIRT 144
           KGARLPWMVAEGDDEPNIGEDIRT
Sbjct: 286 KGARLPWMVAEGDDEPNIGEDIRT 309

[Close]
BLAST of Cucsat.G15684.T2 vs. ExPASy TrEMBL
Match: A0A1S3BMX4 (uncharacterized protein YciO isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491794 PE=3 SV=1)

HSP 1 Score: 295 bits (754), Expect = 1.48e-98
Identity = 141/144 (97.92%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 1   MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDP 60
           MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDD+ICQAILEKMD+P
Sbjct: 166 MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDAICQAILEKMDNP 225

Query: 61  LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG 120
           LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG
Sbjct: 226 LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG 285

Query: 121 KGARLPWMVAEGDDEPNIGEDIRT 144
           KGARLPWMVAEGDDEPN+GEDIRT
Sbjct: 286 KGARLPWMVAEGDDEPNLGEDIRT 309

[Close]
BLAST of Cucsat.G15684.T2 vs. ExPASy TrEMBL
Match: A0A5D3C4N1 (YrdC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001410 PE=3 SV=1)

HSP 1 Score: 295 bits (754), Expect = 6.13e-98
Identity = 141/144 (97.92%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 1   MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDP 60
           MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDD+ICQAILEKMD+P
Sbjct: 210 MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDAICQAILEKMDNP 269

Query: 61  LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG 120
           LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG
Sbjct: 270 LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG 329

Query: 121 KGARLPWMVAEGDDEPNIGEDIRT 144
           KGARLPWMVAEGDDEPN+GEDIRT
Sbjct: 330 KGARLPWMVAEGDDEPNLGEDIRT 353

[Close]
BLAST of Cucsat.G15684.T2 vs. ExPASy TrEMBL
Match: A0A5A7TLP4 (YrdC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G004380 PE=3 SV=1)

HSP 1 Score: 295 bits (754), Expect = 7.41e-98
Identity = 141/144 (97.92%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 1   MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDP 60
           MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDD+ICQAILEKMD+P
Sbjct: 216 MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDAICQAILEKMDNP 275

Query: 61  LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG 120
           LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG
Sbjct: 276 LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG 335

Query: 121 KGARLPWMVAEGDDEPNIGEDIRT 144
           KGARLPWMVAEGDDEPN+GEDIRT
Sbjct: 336 KGARLPWMVAEGDDEPNLGEDIRT 359

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BLAST of Cucsat.G15684.T2 vs. ExPASy TrEMBL
Match: A0A6J1DQJ1 (uncharacterized protein LOC111023411 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111023411 PE=3 SV=1)

HSP 1 Score: 264 bits (675), Expect = 1.57e-86
Identity = 128/135 (94.81%), Postives = 131/135 (97.04%), Query Frame = 0 

Query: 1   MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDP 60
           MVKHCLPGPYTFILTASKELPK CIR+GTTTAKYASRKNVGVRIPDD ICQAILEKMD P
Sbjct: 169 MVKHCLPGPYTFILTASKELPKPCIRFGTTTAKYASRKNVGVRIPDDIICQAILEKMDSP 228

Query: 61  LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG 120
           LISTSVK PKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG
Sbjct: 229 LISTSVKCPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG 288

Query: 121 KGARLPWMVAEGDDE 135
           KGARLPWMVAEGD++
Sbjct: 289 KGARLPWMVAEGDED 303

The following BLAST results are available for this feature:
BLAST of Cucsat.G15684.T2 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P451033.1e-1636.43Uncharacterized protein HI_1198 OS=Haemophilus influenzae (strain ATCC 51907 / D... [more]
P0AFR55.9e-1533.59Uncharacterized protein YciO OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700... [more]
P0AFR45.9e-1533.59Uncharacterized protein YciO OS=Escherichia coli (strain K12) OX=83333 GN=yciO P... [more]
P0AFR65.9e-1533.59Uncharacterized protein YciO OS=Shigella flexneri OX=623 GN=yciO PE=3 SV=1[more]
Q9UYB21.9e-0530.58Threonylcarbamoyl-AMP synthase OS=Pyrococcus abyssi (strain GE5 / Orsay) OX=2728... [more]
BLAST of Cucsat.G15684.T2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004145661.19.23e-100100.00uncharacterized protein LOC101214648 isoform X2 [Cucumis sativus] >KGN58172.1 hy... [more]
XP_008450106.13.05e-9897.92PREDICTED: uncharacterized protein YciO isoform X1 [Cucumis melo][more]
TYK05316.11.27e-9797.92yrdC domain-containing protein [Cucumis melo var. makuwa][more]
KAA0042916.11.53e-9797.92yrdC domain-containing protein [Cucumis melo var. makuwa][more]
XP_038877956.11.30e-9395.10uncharacterized protein YciO [Benincasa hispida][more]
BLAST of Cucsat.G15684.T2 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBV94.47e-100100.00YrdC-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G585350 P... [more]
A0A1S3BMX41.48e-9897.92uncharacterized protein YciO isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491794 ... [more]
A0A5D3C4N16.13e-9897.92YrdC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7TLP47.41e-9897.92YrdC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A6J1DQJ11.57e-8694.81uncharacterized protein LOC111023411 isoform X1 OS=Momordica charantia OX=3673 G... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006070YrdC-like domainPFAMPF01300Sua5_yciO_yrdCcoord: 2..120
e-value: 4.1E-23
score: 81.8
IPR006070YrdC-like domainPROSITEPS51163YRDCcoord: 1..122
score: 13.541929
NoneNo IPR availableGENE3D3.90.870.10DHBP synthasecoord: 1..127
e-value: 1.0E-29
score: 105.0
NoneNo IPR availablePANTHERPTHR42828DHBP SYNTHASE RIBB-LIKE ALPHA/BETA DOMAIN-CONTAINING PROTEINcoord: 1..136
IPR017945DHBP synthase RibB-like alpha/beta domain superfamilySUPERFAMILY55821YrdC/RibBcoord: 2..122

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G15684Cucsat.G15684gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G15684.T2.E1Cucsat.G15684.T2.E1exon
Cucsat.G15684.T2.E2Cucsat.G15684.T2.E2exon
Cucsat.G15684.T2.E3Cucsat.G15684.T2.E3exon
Cucsat.G15684.T2.E4Cucsat.G15684.T2.E4exon
Cucsat.G15684.T2.E5Cucsat.G15684.T2.E5exon
Cucsat.G15684.T2.E6Cucsat.G15684.T2.E6exon
Cucsat.G15684.T2.E7Cucsat.G15684.T2.E7exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G15684.T2.C1Cucsat.G15684.T2.C1CDS
Cucsat.G15684.T2.C2Cucsat.G15684.T2.C2CDS
Cucsat.G15684.T2.C3Cucsat.G15684.T2.C3CDS
Cucsat.G15684.T2.C4Cucsat.G15684.T2.C4CDS
Cucsat.G15684.T2.C5Cucsat.G15684.T2.C5CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G15684.T2Cucsat.G15684.T2-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003725 double-stranded RNA binding
molecular_function GO:0016740 transferase activity