Cucsat.G15684.T18 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G15684.T18
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionYrdC-like domain-containing protein
Locationctg2009: 5777766 .. 5781527 (+)
RNA-Seq ExpressionCucsat.G15684.T18
SyntenyCucsat.G15684.T18
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAGTTGTAGAAAGTGGAAGATTGCATGCCTATTTATTTATTTATTTATGTAATGATGAAAAAAGAAAATCCAATTGAAATGTGACGTGGCATTCCAGGTGGGAAGTTCTATCTATGAACTGTGCCTCCTCTCCGATCACAGCTTCTCCCCTCTCTTTTCCTTCTCAGTTCCTAATTCCGGCGGTGCACTCACGCTGGTTCCCCAATCTCCCAAATGATCATCAATGTCAAACCCGGCCTACATCCTTCTACTGCTTCTTCTCTCTCTTCCTCTCGGGCTTTCGCACCAATACGCTTCCCTTCGCCTCCATCTGCCACTCCTTTCGACGGTTTTGAAACTTCCCGCCGCCTCCAGGTCCTCGCCATGGTTGTCAAGCGGAGTCCTAAGCGCCTCAAGTACTCGGCTCCACGCTTCACCAAGGTCCTCTCCTTCCTAACTACTTCTGTGTTTTTTTTTCAGCTTCATTATACCATGCCCTCGCTCCTACTTGTTCTATATGAAACTCTTATCGCTATTGCTCCGGATAGAATATCTAGTGGTGGAGGTAGAGTTGCGACAGGTGAATTAAGCATTTACGCTGTTTTCGTCGCTTATTTATTTTTACACTCTAGATAGATAATTAGTAAATTTTGCAGGAGATTGTGTTGTGGATTTGAACTGTTGGAAACACTTCTGACTGGTTAAGATTTTCCCTTCTGCGTGTGTGCGTTTCTTGTTGGGAGAGGGTGATATTATATGAACACTACTCTACTTCCACCGTGATCATATTCCAGTTTGGGATGCTTTATTGCTAGTTTTTGTTGGGAGTTAATTCAGTTGGGAATGAAATTTGGAAATTAATGAAGTTATTAGACTTGTGTTATTGATATGCTTAAAGTTACTATGGTCTTTACCAGGAAGGGAGCTTGATATATGTCAAAGCTGAATCAGGAGAGGACGGCTGGAAATTAGACCCTATTGTTAATCTTCTAAAAGAGGGTGCAGTTGGGGTTATTCCTACTGATACCGTGTATTTCCCTCTTACTTTATTTCACTCTCACCTTTTCAGATTTTTTTATTGTTATCATTGCTGACTCTCAAGTTGAAATTGGACGCTTGAACGAATAAATTTGTTCATAGTTAGAAAGAATCATATTTTCAATTTTTGTGTCATGCCACTCAGAAATTCAGAATTTAGGTTGTATTACCTCTTTTGGGAACAAGCTTCAAACTTCTGCAATAAATTTTTGGTTTTCCATAAATATACTTGCAATATTATTGGTTCCTTAAAATTGATTGTATCTGTATGGATCTTCTGATTGACGGATGAGAGTTCTCAAGGAAATGTAGAAGGTTTAATTTTGTGATCTTAAAGTTTACAGTGATCAGGAAAGCAGCAGGATAAATTCCTTTTTTGTTCTCACATTATTTATTATGATCTTGGTGGTTCATTTCATGAGTGTTGATTTCACTGCATTTTTGTTCCCTTGTGTACGTCTTCTTTGTCTGTCTTTTTATTTTTAACGGGTATGTATGCTTGTATTTTTCAAGGTATGGAATTGTTTGTGATCTGAAGAACCCCTCAGCCATTGAACGAATGCAGAGGTTGAAGTTGTTAATTTGTTTTGCTAGAAACTGTATTTGGTTAGATACTTCAGCTTCTCTCTCCTGCTGTTAAAGTTTCTTGTTTTGTTTAATGCAGGATCAAGAATATAGAGCCTACAAAGGTATCGTTATTTTTTACAATCTCTTTTATGTGCTTTACGATAATGCTCATATGGTCCTTCAAACTGTTGAACATCAATGCTCAAATGCGTATAATAAAGTTACTGAACAAGATGGTTTATTCTACTTAGATCCCTCATTTCTGTCTTCTATACAACCCACCTTTTCATTTTTCCATTATGCTTCTTAATTTTTACTTCTAATTAACTATGCAGCCTCTGAGCATTTTGTGCCGCTCCTTCCGGGACATTGATAAATATACTACAGGGTTTCCTCGTGGTGATGGCCAAGGCCATTCAAGTATATTTCGCATGGTTAAGCATTGTCTACCTGGACCAGTGAGTGGTTCTGCTAATCCTTCCTTATGACGATAACTCCATATTATCCCTCCTTCGGATTGCATGGTGTCCCAAATGACCTCTAGTACCTTTACTTTCGTAATCATGTAGATGTGAAAAAAAAAGACATTTTCTGGTGTTGTCCTATCTTGATACATTATAGTTCGCAGTGAAACTTTCAATGTACATTGAATTCTTTAACTATAGCTATTGATTTTTGAGAGTTCTTGTGTAACAGTACACCTTCATCTTGACTGCAAGCAAAGAGCTGCCTAAACATTGTATAAGGTATGGCACGACCACTGCAAAATATGCATCAAGGAAGAATGTAGGTGTGCGCATTCCTGATGATTCAATTTGTCAAGCAATACTGGAAAAGATGGACGACCCATTGATATCCACAAGGTTAGAACAATTAATACTCTTCTAATTCTCTCCACCCTCTTAACAAATTTCTTGATTGGTTTAGGGGACTTAAGACCTTCTGGATTGATCATCTATTTTTCATGCCACAATTCCCCATGAGACAGTTTTCAATTTGGTGCAATCGACCATCACTATTATAACAATATTCTCTCCACTTTTTCTATCCAGTTCTGGATTGAGCACTGGAAGGGGAGACTGCTTGTGTTTATATTAATTGGCTTAAGATAGCTGTAATTATTGAATTCTTACAATAATGATGGGTAAATAAGTACTTCGGAAGTGATGATTTGTTCAAACTTCAATCTATACATTTGCTGTTCTTTCAGTGTCAAATCCCCGAAGGAAAATGAGTGGTTGCTCGACCCAGTTGTCATAGCTGATATCTATGGACAAGAGGTATGAATAAATCTTACAGAGGCTGTGTGATTGTTTATGCTAATTTCTGCAGTTATGCCATTTCCCCCCCTGAAAGCGGGTTGTATGCTTCAAATAGGGTCTGGATTTTGTGGTGGATGGTGGAGTTAGAGTGGCAGATCCATCCACTGTAGTAGATATGACCATCACTCCTCCAAAGATTTTGCGGCAAGGGAAGGTAATTCATTAGTCATTTCCTTTCTAGTATGCTACCCCCTAAATTATGATTACACTCATCTCTTGCAATAACGTATGGAGCAGTATGGTAATGAATAGTACTGTCATTCAGTCAAAAACAATATTTTCTATTAACTTCAGATGAAACAGAATCTGAAGTTGATCATTCATTTCTTTACCATCCTGATCCCAATGATCAATCCTCATGGAATGGAATAAGCACCATCATTTCAAGTTTCTGTTGGATTTGGATGATGAATTATTTTTCATTGTCTTCCCACTTTTTGCTCGAATGATTTGCAACGTCCAGGGAGCTAGACTGCCATGGATGGTAGCTGAAGGTGATGACGAACCAAACATAGGTGAAGATATCCGCACCTGAACTTGCCATTTTGTAGATAATCCACTGAACATATTGCATGGAAGACATGATCCAGTTGCAGTTCACAAACAAATCTGGTGGAGTTTGTACAGTGTTTGCTATTGGTATATAAACTAACACTGAAAGAGGGTGGGCCTTTCTAAGTTGAAGATCAAATGTTGCTATACTGCTTGTCTTAGAGGTTTTTTTATCAACTTGAAAATTAGATTCTCTTTTACCTACATGTAATGTAACTCATAAATATAGGCAAATGCAATCCTCATTCTAAAATTTTCTCTTAGAAGAACAGAAGAATTTACATTTTCATTTGGGGAAATTTC

Coding sequence (CDS)

ATGCAGAGGATCAAGAATATAGAGCCTACAAAGCCTCTGAGCATTTTGTGCCGCTCCTTCCGGGACATTGATAAATATACTACAGGGTTTCCTCGTGGTGATGGCCAAGGCCATTCAAGTATATTTCGCATGGTTAAGCATTGTCTACCTGGACCATACACCTTCATCTTGACTGCAAGCAAAGAGCTGCCTAAACATTGTATAAGGTATGGCACGACCACTGCAAAATATGCATCAAGGAAGAATGTAGGTGTGCGCATTCCTGATGATTCAATTTGTCAAGCAATACTGGAAAAGATGGACGACCCATTGATATCCACAAGTGTCAAATCCCCGAAGGAAAATGAGTGGTTGCTCGACCCAGTTGTCATAGCTGATATCTATGGACAAGAGGGTCTGGATTTTGTGGTGGATGGTGGAGTTAGAGTGGCAGATCCATCCACTGTAGTAGATATGACCATCACTCCTCCAAAGATTTTGCGGCAAGGGAAGGTAATTCATTAG

Protein sequence

MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKVIH
Homology
[Close]
BLAST of Cucsat.G15684.T18 vs. ExPASy Swiss-Prot
Match: P0AFR5 (Uncharacterized protein YciO OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=yciO PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 9.6e-17
Identity = 48/161 (29.81%), Postives = 86/161 (53.42%), Query Frame = 0 

Query: 3   RIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKE 62
           RI+ +      +++CR   ++  Y+           +  FR++K+  PG YTFIL  +KE
Sbjct: 55  RIRQLPDGHNFTLMCRDLSELSTYSF--------VDNVAFRLMKNNTPGNYTFILKGTKE 114

Query: 63  LPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPV 122
           +P+  ++          RK +G+R+P + I QA+LE + +P++STS+  P       DP 
Sbjct: 115 VPRRLLQ--------EKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPE 174

Query: 123 VIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG 164
            I D   ++ +D ++ GG     P+TV+D+T   P ++R+G
Sbjct: 175 EIKDRL-EKQVDLIIHGGYLGQKPTTVIDLTDDTPVVVREG 198

[Close]
BLAST of Cucsat.G15684.T18 vs. ExPASy Swiss-Prot
Match: P0AFR4 (Uncharacterized protein YciO OS=Escherichia coli (strain K12) OX=83333 GN=yciO PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 9.6e-17
Identity = 48/161 (29.81%), Postives = 86/161 (53.42%), Query Frame = 0 

Query: 3   RIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKE 62
           RI+ +      +++CR   ++  Y+           +  FR++K+  PG YTFIL  +KE
Sbjct: 55  RIRQLPDGHNFTLMCRDLSELSTYSF--------VDNVAFRLMKNNTPGNYTFILKGTKE 114

Query: 63  LPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPV 122
           +P+  ++          RK +G+R+P + I QA+LE + +P++STS+  P       DP 
Sbjct: 115 VPRRLLQ--------EKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPE 174

Query: 123 VIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG 164
            I D   ++ +D ++ GG     P+TV+D+T   P ++R+G
Sbjct: 175 EIKDRL-EKQVDLIIHGGYLGQKPTTVIDLTDDTPVVVREG 198

[Close]
BLAST of Cucsat.G15684.T18 vs. ExPASy Swiss-Prot
Match: P0AFR6 (Uncharacterized protein YciO OS=Shigella flexneri OX=623 GN=yciO PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 9.6e-17
Identity = 48/161 (29.81%), Postives = 86/161 (53.42%), Query Frame = 0 

Query: 3   RIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKE 62
           RI+ +      +++CR   ++  Y+           +  FR++K+  PG YTFIL  +KE
Sbjct: 55  RIRQLPDGHNFTLMCRDLSELSTYSF--------VDNVAFRLMKNNTPGNYTFILKGTKE 114

Query: 63  LPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPV 122
           +P+  ++          RK +G+R+P + I QA+LE + +P++STS+  P       DP 
Sbjct: 115 VPRRLLQ--------EKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPE 174

Query: 123 VIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG 164
            I D   ++ +D ++ GG     P+TV+D+T   P ++R+G
Sbjct: 175 EIKDRL-EKQVDLIIHGGYLGQKPTTVIDLTDDTPVVVREG 198

[Close]
BLAST of Cucsat.G15684.T18 vs. ExPASy Swiss-Prot
Match: P45103 (Uncharacterized protein HI_1198 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=HI_1198 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.8e-16
Identity = 49/161 (30.43%), Postives = 88/161 (54.66%), Query Frame = 0 

Query: 4   IKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKEL 63
           I+ +      +++C    ++  Y         + +++ +R++K+  PG YTFILTA+KEL
Sbjct: 56  IRKLPEGHNFTLVCSDLSELSTY--------ARVNNTAYRLIKNNTPGRYTFILTATKEL 115

Query: 64  PKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSP-KENEWLLDPV 123
           P+  +         + RK +G+R+PD+ I   +L  + +P++S S+  P +E+    DP 
Sbjct: 116 PRRLMT--------SKRKTIGLRVPDNKIALDLLSALGEPILSCSLMLPNEEHTTQSDPE 175

Query: 124 VIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQG 164
            I D   +  +D ++ GG    +P+TVVD+T   P ILR+G
Sbjct: 176 EIRDRL-EHQVDLIIHGGYLGQEPTTVVDLTEESPVILREG 199

[Close]
BLAST of Cucsat.G15684.T18 vs. ExPASy Swiss-Prot
Match: Q9UYB2 (Threonylcarbamoyl-AMP synthase OS=Pyrococcus abyssi (strain GE5 / Orsay) OX=272844 GN=sua5 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.7e-05
Identity = 37/121 (30.58%), Postives = 58/121 (47.93%), Query Frame = 0 

Query: 44  MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDP 103
           + K   PGP T +L  S+ +P+  I  G  T        V VR+P   I   ++E  + P
Sbjct: 88  LAKRFWPGPLTLVLPKSEVVPR-VITGGLDT--------VAVRMPAHEIALKLIELSERP 147

Query: 104 LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGG-VRVADPSTVVDMTITPPKILRQ 163
           + + S     +        V  D YG+  ++ ++DGG  R+   STV+D+T  PP +LR 
Sbjct: 148 IAAPSANISGKPSPTSAHHVAEDFYGK--IECIIDGGETRIGVESTVIDLTEWPPVLLRP 197

[Close]
BLAST of Cucsat.G15684.T18 vs. NCBI nr
Match: XP_031739482.1 (uncharacterized protein LOC101214648 isoform X1 [Cucumis sativus])

HSP 1 Score: 338 bits (867), Expect = 5.53e-115
Identity = 164/165 (99.39%), Postives = 165/165 (100.00%), Query Frame = 0 

Query: 1   MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 60
           MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS
Sbjct: 123 MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 182

Query: 61  KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 120
           KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD
Sbjct: 183 KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 242

Query: 121 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKV 165
           PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK+
Sbjct: 243 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKM 287

[Close]
BLAST of Cucsat.G15684.T18 vs. NCBI nr
Match: XP_004145661.1 (uncharacterized protein LOC101214648 isoform X2 [Cucumis sativus] >KGN58172.1 hypothetical protein Csa_017456 [Cucumis sativus])

HSP 1 Score: 338 bits (866), Expect = 7.34e-115
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0 

Query: 1   MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 60
           MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS
Sbjct: 123 MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 182

Query: 61  KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 120
           KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD
Sbjct: 183 KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 242

Query: 121 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 164
           PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK
Sbjct: 243 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 286

[Close]
BLAST of Cucsat.G15684.T18 vs. NCBI nr
Match: XP_008450106.1 (PREDICTED: uncharacterized protein YciO isoform X1 [Cucumis melo])

HSP 1 Score: 328 bits (842), Expect = 3.28e-111
Identity = 158/164 (96.34%), Postives = 163/164 (99.39%), Query Frame = 0 

Query: 1   MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 60
           M+RIKNIEP+KPLSILC SFRDIDKYTTGFPRGDGQGHS+IFRMVKHCLPGPYTFILTAS
Sbjct: 123 MRRIKNIEPSKPLSILCHSFRDIDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYTFILTAS 182

Query: 61  KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 120
           KELPKHCIRYGTTTAKYASRKNVGVRIPDD+ICQAILEKMD+PLISTSVKSPKENEWLLD
Sbjct: 183 KELPKHCIRYGTTTAKYASRKNVGVRIPDDAICQAILEKMDNPLISTSVKSPKENEWLLD 242

Query: 121 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 164
           PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK
Sbjct: 243 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 286

[Close]
BLAST of Cucsat.G15684.T18 vs. NCBI nr
Match: TYK05316.1 (yrdC domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 328 bits (842), Expect = 1.42e-110
Identity = 158/164 (96.34%), Postives = 163/164 (99.39%), Query Frame = 0 

Query: 1   MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 60
           M+RIKNIEP+KPLSILC SFRDIDKYTTGFPRGDGQGHS+IFRMVKHCLPGPYTFILTAS
Sbjct: 167 MRRIKNIEPSKPLSILCHSFRDIDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYTFILTAS 226

Query: 61  KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 120
           KELPKHCIRYGTTTAKYASRKNVGVRIPDD+ICQAILEKMD+PLISTSVKSPKENEWLLD
Sbjct: 227 KELPKHCIRYGTTTAKYASRKNVGVRIPDDAICQAILEKMDNPLISTSVKSPKENEWLLD 286

Query: 121 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 164
           PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK
Sbjct: 287 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 330

[Close]
BLAST of Cucsat.G15684.T18 vs. NCBI nr
Match: XP_038877956.1 (uncharacterized protein YciO [Benincasa hispida])

HSP 1 Score: 320 bits (819), Expect = 1.22e-107
Identity = 154/164 (93.90%), Postives = 161/164 (98.17%), Query Frame = 0 

Query: 1   MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 60
           ++RIKNIEP+KPLSILC SFRDIDKYTTGFPRGDGQGHS+IFRMVKHCLPGPYTFILTAS
Sbjct: 123 IRRIKNIEPSKPLSILCHSFRDIDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYTFILTAS 182

Query: 61  KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 120
           KELPKHCIRYGTTTAKYASRKNVGVRIPDD+ICQAILEKMD PLISTSVK+ KENEWLLD
Sbjct: 183 KELPKHCIRYGTTTAKYASRKNVGVRIPDDAICQAILEKMDAPLISTSVKNLKENEWLLD 242

Query: 121 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 164
           PVVIADIYG+EGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK
Sbjct: 243 PVVIADIYGEEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 286

[Close]
BLAST of Cucsat.G15684.T18 vs. ExPASy TrEMBL
Match: A0A0A0LBV9 (YrdC-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G585350 PE=3 SV=1)

HSP 1 Score: 338 bits (866), Expect = 3.55e-115
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0 

Query: 1   MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 60
           MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS
Sbjct: 123 MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 182

Query: 61  KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 120
           KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD
Sbjct: 183 KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 242

Query: 121 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 164
           PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK
Sbjct: 243 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 286

[Close]
BLAST of Cucsat.G15684.T18 vs. ExPASy TrEMBL
Match: A0A1S3BMX4 (uncharacterized protein YciO isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491794 PE=3 SV=1)

HSP 1 Score: 328 bits (842), Expect = 1.59e-111
Identity = 158/164 (96.34%), Postives = 163/164 (99.39%), Query Frame = 0 

Query: 1   MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 60
           M+RIKNIEP+KPLSILC SFRDIDKYTTGFPRGDGQGHS+IFRMVKHCLPGPYTFILTAS
Sbjct: 123 MRRIKNIEPSKPLSILCHSFRDIDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYTFILTAS 182

Query: 61  KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 120
           KELPKHCIRYGTTTAKYASRKNVGVRIPDD+ICQAILEKMD+PLISTSVKSPKENEWLLD
Sbjct: 183 KELPKHCIRYGTTTAKYASRKNVGVRIPDDAICQAILEKMDNPLISTSVKSPKENEWLLD 242

Query: 121 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 164
           PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK
Sbjct: 243 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 286

[Close]
BLAST of Cucsat.G15684.T18 vs. ExPASy TrEMBL
Match: A0A5D3C4N1 (YrdC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001410 PE=3 SV=1)

HSP 1 Score: 328 bits (842), Expect = 6.87e-111
Identity = 158/164 (96.34%), Postives = 163/164 (99.39%), Query Frame = 0 

Query: 1   MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 60
           M+RIKNIEP+KPLSILC SFRDIDKYTTGFPRGDGQGHS+IFRMVKHCLPGPYTFILTAS
Sbjct: 167 MRRIKNIEPSKPLSILCHSFRDIDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYTFILTAS 226

Query: 61  KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 120
           KELPKHCIRYGTTTAKYASRKNVGVRIPDD+ICQAILEKMD+PLISTSVKSPKENEWLLD
Sbjct: 227 KELPKHCIRYGTTTAKYASRKNVGVRIPDDAICQAILEKMDNPLISTSVKSPKENEWLLD 286

Query: 121 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 164
           PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK
Sbjct: 287 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 330

[Close]
BLAST of Cucsat.G15684.T18 vs. ExPASy TrEMBL
Match: A0A6J1DV85 (uncharacterized protein LOC111023411 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111023411 PE=3 SV=1)

HSP 1 Score: 318 bits (816), Expect = 1.13e-107
Identity = 154/164 (93.90%), Postives = 158/164 (96.34%), Query Frame = 0 

Query: 1   MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 60
           M+RIKNIEP KPLSILC SFRD+DKYTTGFPRGDGQGHS+IFRMVKHCLPGPYTFILTAS
Sbjct: 126 MRRIKNIEPLKPLSILCHSFRDVDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYTFILTAS 185

Query: 61  KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 120
           KELPK CIR+GTTTAKYASRKNVGVRIPDD ICQAILEKMD PLISTSVK PKENEWLLD
Sbjct: 186 KELPKPCIRFGTTTAKYASRKNVGVRIPDDIICQAILEKMDSPLISTSVKCPKENEWLLD 245

Query: 121 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 164
           PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK
Sbjct: 246 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 289

[Close]
BLAST of Cucsat.G15684.T18 vs. ExPASy TrEMBL
Match: A0A6J1DQJ1 (uncharacterized protein LOC111023411 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111023411 PE=3 SV=1)

HSP 1 Score: 318 bits (816), Expect = 1.53e-107
Identity = 154/164 (93.90%), Postives = 158/164 (96.34%), Query Frame = 0 

Query: 1   MQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTAS 60
           M+RIKNIEP KPLSILC SFRD+DKYTTGFPRGDGQGHS+IFRMVKHCLPGPYTFILTAS
Sbjct: 126 MRRIKNIEPLKPLSILCHSFRDVDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYTFILTAS 185

Query: 61  KELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLD 120
           KELPK CIR+GTTTAKYASRKNVGVRIPDD ICQAILEKMD PLISTSVK PKENEWLLD
Sbjct: 186 KELPKPCIRFGTTTAKYASRKNVGVRIPDDIICQAILEKMDSPLISTSVKCPKENEWLLD 245

Query: 121 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 164
           PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK
Sbjct: 246 PVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 289

The following BLAST results are available for this feature:
BLAST of Cucsat.G15684.T18 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P0AFR59.6e-1729.81Uncharacterized protein YciO OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700... [more]
P0AFR49.6e-1729.81Uncharacterized protein YciO OS=Escherichia coli (strain K12) OX=83333 GN=yciO P... [more]
P0AFR69.6e-1729.81Uncharacterized protein YciO OS=Shigella flexneri OX=623 GN=yciO PE=3 SV=1[more]
P451032.8e-1630.43Uncharacterized protein HI_1198 OS=Haemophilus influenzae (strain ATCC 51907 / D... [more]
Q9UYB21.7e-0530.58Threonylcarbamoyl-AMP synthase OS=Pyrococcus abyssi (strain GE5 / Orsay) OX=2728... [more]
BLAST of Cucsat.G15684.T18 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031739482.15.53e-11599.39uncharacterized protein LOC101214648 isoform X1 [Cucumis sativus][more]
XP_004145661.17.34e-115100.00uncharacterized protein LOC101214648 isoform X2 [Cucumis sativus] >KGN58172.1 hy... [more]
XP_008450106.13.28e-11196.34PREDICTED: uncharacterized protein YciO isoform X1 [Cucumis melo][more]
TYK05316.11.42e-11096.34yrdC domain-containing protein [Cucumis melo var. makuwa][more]
XP_038877956.11.22e-10793.90uncharacterized protein YciO [Benincasa hispida][more]
BLAST of Cucsat.G15684.T18 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBV93.55e-115100.00YrdC-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G585350 P... [more]
A0A1S3BMX41.59e-11196.34uncharacterized protein YciO isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491794 ... [more]
A0A5D3C4N16.87e-11196.34YrdC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A6J1DV851.13e-10793.90uncharacterized protein LOC111023411 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DQJ11.53e-10793.90uncharacterized protein LOC111023411 isoform X1 OS=Momordica charantia OX=3673 G... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.870.10DHBP synthasecoord: 1..166
e-value: 1.1E-36
score: 127.8
NoneNo IPR availablePIRSRPIRSR004930-1PIRSR004930-1coord: 4..165
e-value: 1.4E-14
score: 51.8
NoneNo IPR availablePANTHERPTHR42828DHBP SYNTHASE RIBB-LIKE ALPHA/BETA DOMAIN-CONTAINING PROTEINcoord: 2..164
IPR006070YrdC-like domainPFAMPF01300Sua5_yciO_yrdCcoord: 3..163
e-value: 6.0E-31
score: 107.3
IPR006070YrdC-like domainPROSITEPS51163YRDCcoord: 1..165
score: 15.860695
IPR017945DHBP synthase RibB-like alpha/beta domain superfamilySUPERFAMILY55821YrdC/RibBcoord: 3..165

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G15684Cucsat.G15684gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G15684.T18.E1Cucsat.G15684.T18.E1exon
Cucsat.G15684.T18.E2Cucsat.G15684.T18.E2exon
Cucsat.G15684.T18.E3Cucsat.G15684.T18.E3exon
Cucsat.G15684.T18.E4Cucsat.G15684.T18.E4exon
Cucsat.G15684.T18.E5Cucsat.G15684.T18.E5exon
Cucsat.G15684.T18.E6Cucsat.G15684.T18.E6exon
Cucsat.G15684.T18.E7Cucsat.G15684.T18.E7exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G15684.T18.C1Cucsat.G15684.T18.C1CDS
Cucsat.G15684.T18.C2Cucsat.G15684.T18.C2CDS
Cucsat.G15684.T18.C3Cucsat.G15684.T18.C3CDS
Cucsat.G15684.T18.C4Cucsat.G15684.T18.C4CDS
Cucsat.G15684.T18.C5Cucsat.G15684.T18.C5CDS
Cucsat.G15684.T18.C6Cucsat.G15684.T18.C6CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G15684.T18Cucsat.G15684.T18-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003725 double-stranded RNA binding
molecular_function GO:0016740 transferase activity