Carg12880 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAAGTCGCCTCCCTCTCTCTCTCTCAATCCGTCAGTGTTGTTTTCTCCCTTCGATTGATTTTGAAATTCCATTTTTTTTTTCCTCGGGAGCGTTTCTCTCTCCAGAATTCATGACGGTATGTTCTGGTTTGATTTCTGCGTCTTAAGAATATTATTACAATTTTCATTTTCAGCTTTGATTTTTTCTTTGATGTGCTTTCCGATCGGTTCGAGTTTTGCTTCCTATTGAGTTTTCGTTTGTTTGATTCGAATCGCCACTTTTGATTTGTTTATTCATTTGATTTTGTTAAAGATTGTTCAATTCTGCGTTTCTAGATTTTTTTTTTTCTTTCGTTTTCCTGAGATTGATGTTGATTGATTCTGGATTAGTTAAATTGGGCAGAAATCTGGATTTTTGTGCAAGATTAATTAATTTCTTGGAGGTCGTTTCTGAATGAATAATTCTGACAGCTGCATTCAAATATGTGACGTAGTTGGAGTAATTGATGTTGGAGGAAACTTTTTAATTGGTCTATTTTGTTTTGTTTGATTGAGTAATATCGATATTTTCAACATCTGTTGCTATAAACCAATGTTGTATGGTAATAAATGATGGTTGTTAGATTCGTAGTCCGATTGGTAAGGTAAGCCATCAGATTCACCGAGGGTACATCTTGTTTGTTCTTTCTTTTTGTAGGACAAAGGTCGGCCATTACCAAAGTTTGGTGAGTGGGATGTTAATGATCCGACATCAGCTGAGGGGTTCACCGTGATTTTTAACAAAGCTAGGGATGAGAAGAAAACAGGCGGCAAACCTGATTCACCTGGAAAAGTTGATGCACAGGGCAGGTCTGGAGCGGATCCTGCCAAGGCACCGCCTGTGAGATACATTCATAATCCTTTTTCTTTTGTGCTATTGAATGGTGGTTATAGCTAG AAAGTCGCCTCCCTCTCTCTCTCTCAATCCGTCAGTGTTGTTTTCTCCCTTCGATTGATTTTGAAATTCCATTTTTTTTTTCCTCGGGAGCGTTTCTCTCTCCAGAATTCATGACGGACAAAGGTCGGCCATTACCAAAGTTTGGTGAGTGGGATGTTAATGATCCGACATCAGCTGAGGGGTTCACCGTGATTTTTAACAAAGCTAGGGATGAGAAGAAAACAGGCGGCAAACCTGATTCACCTGGAAAAGTTGATGCACAGGGCAGGTCTGGAGCGGATCCTGCCAAGGCACCGCCTGTGAGATACATTCATAATCCTTTTTCTTTTGTGCTATTGAATGGTGGTTATAGCTAG ATGACGGACAAAGGTCGGCCATTACCAAAGTTTGGTGAGTGGGATGTTAATGATCCGACATCAGCTGAGGGGTTCACCGTGATTTTTAACAAAGCTAGGGATGAGAAGAAAACAGGCGGCAAACCTGATTCACCTGGAAAAGTTGATGCACAGGGCAGGTCTGGAGCGGATCCTGCCAAGGCACCGCCTGTGAGATACATTCATAATCCTTTTTCTTTTGTGCTATTGAATGGTGGTTATAGCTAG MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAPPVRYIHNPFSFVLLNGGYS
BLAST of Carg12880 vs. NCBI nr
Match: XP_008463014.1 (PREDICTED: RPM1-interacting protein 4-like isoform X1 [Cucumis melo]) HSP 1 Score: 145.2 bits (365), Expect = 9.6e-32 Identity = 68/78 (87.18%), Postives = 70/78 (89.74%), Query Frame = 0
BLAST of Carg12880 vs. NCBI nr
Match: XP_022975420.1 (uncharacterized protein LOC111474733 isoform X1 [Cucurbita maxima]) HSP 1 Score: 139.0 bits (349), Expect = 6.9e-30 Identity = 67/79 (84.81%), Postives = 71/79 (89.87%), Query Frame = 0
BLAST of Carg12880 vs. NCBI nr
Match: XP_023535777.1 (uncharacterized protein LOC111797108 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 139.0 bits (349), Expect = 6.9e-30 Identity = 67/79 (84.81%), Postives = 71/79 (89.87%), Query Frame = 0
BLAST of Carg12880 vs. NCBI nr
Match: XP_022936748.1 (uncharacterized protein LOC111443250 [Cucurbita moschata] >XP_022975427.1 uncharacterized protein LOC111474733 isoform X2 [Cucurbita maxima] >XP_023535778.1 uncharacterized protein LOC111797108 isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 136.7 bits (343), Expect = 3.4e-29 Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 0
BLAST of Carg12880 vs. NCBI nr
Match: XP_022139562.1 (RPM1-interacting protein 4 [Momordica charantia]) HSP 1 Score: 132.1 bits (331), Expect = 8.4e-28 Identity = 60/67 (89.55%), Postives = 65/67 (97.01%), Query Frame = 0
BLAST of Carg12880 vs. TAIR10
Match: AT5G55850.2 (RPM1-interacting protein 4 (RIN4) family protein) HSP 1 Score: 100.9 bits (250), Expect = 3.8e-22 Identity = 50/66 (75.76%), Postives = 54/66 (81.82%), Query Frame = 0
BLAST of Carg12880 vs. TAIR10
Match: AT2G04410.1 (RPM1-interacting protein 4 (RIN4) family protein) HSP 1 Score: 92.4 bits (228), Expect = 1.3e-19 Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0
BLAST of Carg12880 vs. TAIR10
Match: AT5G63270.1 (RPM1-interacting protein 4 (RIN4) family protein) HSP 1 Score: 68.9 bits (167), Expect = 1.6e-12 Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 0
BLAST of Carg12880 vs. TAIR10
Match: AT5G40645.1 (RPM1-interacting protein 4 (RIN4) family protein) HSP 1 Score: 68.6 bits (166), Expect = 2.1e-12 Identity = 33/55 (60.00%), Postives = 38/55 (69.09%), Query Frame = 0
BLAST of Carg12880 vs. TAIR10
Match: AT3G48450.1 (RPM1-interacting protein 4 (RIN4) family protein) HSP 1 Score: 65.9 bits (159), Expect = 1.3e-11 Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0
BLAST of Carg12880 vs. Swiss-Prot
Match: sp|O22633|NOI4_ARATH (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 1.8e-21 Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 0
BLAST of Carg12880 vs. Swiss-Prot
Match: sp|Q8GYN5|RIN4_ARATH (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 6.2e-06 Identity = 20/37 (54.05%), Postives = 30/37 (81.08%), Query Frame = 0
BLAST of Carg12880 vs. TrEMBL
Match: tr|A0A1S3CI83|A0A1S3CI83_CUCME (RPM1-interacting protein 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501257 PE=4 SV=1) HSP 1 Score: 145.2 bits (365), Expect = 6.4e-32 Identity = 68/78 (87.18%), Postives = 70/78 (89.74%), Query Frame = 0
BLAST of Carg12880 vs. TrEMBL
Match: tr|A0A1S3CI91|A0A1S3CI91_CUCME (RPM1-interacting protein 4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501257 PE=4 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 3.6e-27 Identity = 59/67 (88.06%), Postives = 63/67 (94.03%), Query Frame = 0
BLAST of Carg12880 vs. TrEMBL
Match: tr|A0A0A0K6Y6|A0A0A0K6Y6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G127370 PE=4 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 4.0e-26 Identity = 58/63 (92.06%), Postives = 59/63 (93.65%), Query Frame = 0
BLAST of Carg12880 vs. TrEMBL
Match: tr|A0A2H5P5S1|A0A2H5P5S1_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_106570 PE=4 SV=1) HSP 1 Score: 115.9 bits (289), Expect = 4.1e-23 Identity = 54/66 (81.82%), Postives = 57/66 (86.36%), Query Frame = 0
BLAST of Carg12880 vs. TrEMBL
Match: tr|V4UTF7|V4UTF7_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10010079mg PE=4 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 5.4e-23 Identity = 54/66 (81.82%), Postives = 57/66 (86.36%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
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