CmoCh09G010190 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh09G010190
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RPM1-interacting protein 4 (RIN4) family protein
Location	Cmo_Chr09 : 5434190 .. 5436133 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAATCCTGACAGCTGCATTCAAATATGTGACGTAGTTGGAGTAATTGATGCTGGAGGCAACTTTTTAATTGGTCTATTTTGTTTTGTTTGATGGATTAATATCGATATTTTCAACATCTGTTGCTATAAACCAATGTTGTATGGTAATAAATGATGGTTGTTAGATTCGTAGTCCGATTGGTAAGGTAAGCCATCAGTTTCACCGAGGGTACATCTTGTTTGTTCTTTCTTTTTGTAGGACAAAGGTCGGCCATTGCCAAAGTTTGGTGAGTGGGATGTTAATGATCCGACATCAGCGGAGGGGTTCACCGTGATTTTTAACAAAGCTAGGGATGAGAAGAAAACAGGCGGCAAGCCTGATTCACCTGGAAAAGTTGATGCACAGGGCAGGTCTGGAGCGGATCCTGCCAAGGCACCGCCTGTGAGATACATTCATAATCCTTTTTCTTTTGTGCTATTGAATGGTGGTTATAGCTAGCATCTCTATTGATATTAAAGTAGCTGGCATCTAAATAGTCCTTCTTTTGCATCTTTGGACAATTGTTTGGTTTATTACTGTCAATGAATTTCTGAGAGTGTTGCTTCTGATAGTGTGGGTGTGTATATATATATGTGCATATATCTGGGTTGAGCTCTGTTCAAACTCTTGGGAAGTATCTTAATTTGGAATTAAAACGTGCTGGTTAAGTACCTAGAATTAAGCTTTAAGAAGAGATGAAACATGATATCACACCATTTAATGTAACAAAATTTGAATCTCTTTGATTTTATATACCTTGTTAAGTACTTTATGTTCATGAAACATGAATTTCCTAGTTTTGTTTATCTTTGAGAGGGCTCTGGTTCTTGTTGCATAAATGTAGGCGGGTCGAATGTAATGACTTGATCTCAGTTCTTGTTGCATAAATGATTAATCTGCAATGTTACCTTACATATTGTATTTACAAGTTTTATTTGGCCTTTTTTGCCCCCTCGTGTGGATGATTATCAGAAGAAATGGCTTTGCTGTATCCAAAGTCCCCCTGCTGAATCTTGAGAAGGATTCGTTTAGAAGCCTTGGTTGAAAAACAATATTATTCTGTAATTGTGCTACTTTGGCTTCTCAAAGACGATGAACTTTTCATGGAGCCCTGATGTTCCTGCTAAATTTTATGCAATTTCATGTAAAGCTGAGTGTTATTGTTGTGGAGGAAAAAGTAAAGAAGACAAACATGTATTATATTTATATGATTGATATGGTGGTTTTTTATTATAGGATACAGTTGCTATTCTGTCTTTGCCTTTGGTGTGAGCTGTAAAGCTTTGCACTAGACATGATGTATAATTGTGGCTGGTATAATTAATGTATTACAACCTTTTCTTTTCTTGGAAGACAGCCTTTCCCATAACATAAATATTTACTCGACAGGGAAGATTTGAACCTACGACCCACCAAGAAAAGACATTTGATGTCTGGTTTAGTTCTCCCATAACACACAAACTACACAAACTTATAGAGGCTTTTCCCCCGACTCTTCAATTCTAGTATGGCTCTGATTTTGCACTTCTTTCCTCTGTAGTACCTCGACGTGACATGAGCGTCCAATGGGTTCTCAAGAATCTATTTTCCTTTCTTATATAAGGGAGACCGCAATTGGAAAAAGAGGATGAACGGGGAGGAATAACCAATCGATGAAGGAACATGAAACCATTTTGTTTCAATAGAGGTACGAGAAAGGATTGGGGGCAATGAAGTAGGTGAAGTGGTTATGACTGCTGCTAAGCAGTGCAAAAGCTAAGGAGACTTTGATGGTAGCTAATTGAAGACTGAACATAAGTAGGCGGTGTTCGTAAACATGTTAAAGGGCTCCCGTCTTTGGCGGGTCACCTTTCCAAGACTGAGAAAGGCGAACATTTGGGCAAGTAAGTAGGAGGTCTTCGTAAACATGTTAAAGGGCTC

mRNA sequence

ATGAATAATCCTGACAGCTGCATTCAAATATGTGACGTAGTTGGAGACAAAGGTCGGCCATTGCCAAAGTTTGGTGAGTGGGATGTTAATGATCCGACATCAGCGGAGGGGTTCACCGTGATTTTTAACAAAGCTAGGGATGAGAAGAAAACAGGCGGCAAGCCTGATTCACCTGGAAAAGTTGATGCACAGGGCAGGTCTGGAGCGGATCCTGCCAAGGCACCGCCTGTGAGATACATTCATAATCCTTTTTCTTTTGTGCTATTGAATGGTGGTTATAGCTAGCATCTCTATTGATATTAAAGTAGCTGGCATCTAAATAGTCCTTCTTTTGCATCTTTGGACAATTGTTTGGTTTATTACTGTCAATGAATTTCTGAGAGTGTTGCTTCTGATAGTGTGGGTGTGTATATATATATGTGCATATATCTGGGTTGAGCTCTGTTCAAACTCTTGGGAAGTATCTTAATTTGGAATTAAAACGTGCTGGTTAAGTACCTAGAATTAAGCTTTAAGAAGAGATGAAACATGATATCACACCATTTAATGTAACAAAATTTGAATCTCTTTGATTTTATATACCTTGTTAAGTACTTTATGTTCATGAAACATGAATTTCCTAGTTTTGTTTATCTTTGAGAGGGCTCTGGTTCTTGTTGCATAAATGTAGGCGGGTCGAATGTAATGACTTGATCTCAGTTCTTGTTGCATAAATGATTAATCTGCAATGTTACCTTACATATTGTATTTACAAGTTTTATTTGGCCTTTTTTGCCCCCTCGTGTGGATGATTATCAGAAGAAATGGCTTTGCTGTATCCAAAGTCCCCCTGCTGAATCTTGAGAAGGATTCGTTTAGAAGCCTTGGTTGAAAAACAATATTATTCTGTAATTGTGCTACTTTGGCTTCTCAAAGACGATGAACTTTTCATGGAGCCCTGATGTTCCTGCTAAATTTTATGCAATTTCATGTAAAGCTGAGTGTTATTGTTGTGGAGGAAAAAGTAAAGAAGACAAACATGTATTATATTTATATGATTGATATGGTGGTTTTTTATTATAGGATACAGTTGCTATTCTGTCTTTGCCTTTGGTGTGAGCTGTAAAGCTTTGCACTAGACATGATGTATAATTGTGGCTGGTATAATTAATGTATTACAACCTTTTCTTTTCTTGGAAGACAGCCTTTCCCATAACATAAATATTTACTCGACAGGGAAGATTTGAACCTACGACCCACCAAGAAAAGACATTTGATGTCTGGTTTAGTTCTCCCATAACACACAAACTACACAAACTTATAGAGGCTTTTCCCCCGACTCTTCAATTCTAGTATGGCTCTGATTTTGCACTTCTTTCCTCTGTAGTACCTCGACGTGACATGAGCGTCCAATGGGTTCTCAAGAATCTATTTTCCTTTCTTATATAAGGGAGACCGCAATTGGAAAAAGAGGATGAACGGGGAGGAATAACCAATCGATGAAGGAACATGAAACCATTTTGTTTCAATAGAGGTACGAGAAAGGATTGGGGGCAATGAAGTAGGTGAAGTGGTTATGACTGCTGCTAAGCAGTGCAAAAGCTAAGGAGACTTTGATGGTAGCTAATTGAAGACTGAACATAAGTAGGCGGTGTTCGTAAACATGTTAAAGGGCTCCCGTCTTTGGCGGGTCACCTTTCCAAGACTGAGAAAGGCGAACATTTGGGCAAGTAAGTAGGAGGTCTTCGTAAACATGTTAAAGGGCTC

Coding sequence (CDS)

ATGAATAATCCTGACAGCTGCATTCAAATATGTGACGTAGTTGGAGACAAAGGTCGGCCATTGCCAAAGTTTGGTGAGTGGGATGTTAATGATCCGACATCAGCGGAGGGGTTCACCGTGATTTTTAACAAAGCTAGGGATGAGAAGAAAACAGGCGGCAAGCCTGATTCACCTGGAAAAGTTGATGCACAGGGCAGGTCTGGAGCGGATCCTGCCAAGGCACCGCCTGTGAGATACATTCATAATCCTTTTTCTTTTGTGCTATTGAATGGTGGTTATAGCTAG

Homology

[Close]

BLAST of CmoCh09G010190 vs. Swiss-Prot
Match: RIN4_ARATH (RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.4e-06
Identity = 20/37 (54.05%), Postives = 30/37 (81.08%), Query Frame = 1


Query: 16  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTG 53
           +K   +PKFG+WD N+P+SA+G+T IFNK R+E+ +G
Sbjct: 143 EKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSG 179

[Close]

BLAST of CmoCh09G010190 vs. TrEMBL
Match: A0A0A0K6Y6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G127370 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.6e-25
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 1


Query: 16 DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAP 75
          DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA GR+  DPAK P
Sbjct: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRNAPDPAKTP 62

Query: 76 P 77
          P
Sbjct: 63 P 63

[Close]

BLAST of CmoCh09G010190 vs. TrEMBL
Match: V4UTF7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010079mg PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-22
Identity = 53/66 (80.30%), Postives = 56/66 (84.85%), Query Frame = 1


Query: 14 VGDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAK 73
          + DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKPDSPGKVD   R G DPAK
Sbjct: 1  MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPDSPGKVDPPIRHGVDPAK 60

Query: 74 APPVRY 80
            P ++
Sbjct: 61 PQPRKW 66

[Close]

BLAST of CmoCh09G010190 vs. TrEMBL
Match: A0A067F7I0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034970mg PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-22
Identity = 53/66 (80.30%), Postives = 56/66 (84.85%), Query Frame = 1


Query: 14 VGDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAK 73
          + DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKPDSPGKVD   R G DPAK
Sbjct: 1  MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPDSPGKVDPPIRHGVDPAK 60

Query: 74 APPVRY 80
            P ++
Sbjct: 61 PQPRKW 66

[Close]

BLAST of CmoCh09G010190 vs. TrEMBL
Match: A0A0D2U289_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G451800 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 6.4e-22
Identity = 50/65 (76.92%), Postives = 56/65 (86.15%), Query Frame = 1


Query: 16 DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAP 75
          DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP+SP K DA G+ GADP+K  
Sbjct: 4  DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPESPAKADAHGKPGADPSKPQ 63

Query: 76 PVRYI 81
            +++
Sbjct: 64 SKKWL 68

[Close]

BLAST of CmoCh09G010190 vs. TrEMBL
Match: A0A0D2V2G6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G451800 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 8.4e-22
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 1


Query: 16 DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAK 74
          DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP+SP K DA G+ GADP+K
Sbjct: 4  DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPESPAKADAHGKPGADPSK 61

[Close]

BLAST of CmoCh09G010190 vs. TAIR10
Match: AT5G55850.2 (AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 101.3 bits (251), Expect = 3.4e-22
Identity = 50/66 (75.76%), Postives = 54/66 (81.82%), Query Frame = 1


Query: 16 DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGR---SGADPA 75
          DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPGK  ++G     G DP+
Sbjct: 19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGK-SSEGHVKSGGGDPS 78

Query: 76 KAPPVR 79
          K  PV+
Sbjct: 79 KPQPVK 83

[Close]

BLAST of CmoCh09G010190 vs. TAIR10
Match: AT2G04410.1 (AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 90.9 bits (224), Expect = 4.5e-19
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 1


Query: 14 VGDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGK 61
          + DKGRPLPKFGEWDVNDP+SAEGFTVIFNKAR+EKK GGK DSPGK
Sbjct: 1  MADKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDSPGK 47

[Close]

BLAST of CmoCh09G010190 vs. TAIR10
Match: AT5G63270.1 (AT5G63270.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-12
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 1


Query: 16 DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKT----GGKPDS 58
          +KG+PLPKFGEWDVN+P SAEGFTVIF+KA DEKKT    G  P+S
Sbjct: 4  NKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNS 49

[Close]

BLAST of CmoCh09G010190 vs. TAIR10
Match: AT5G40645.1 (AT5G40645.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 68.6 bits (166), Expect = 2.4e-12
Identity = 33/55 (60.00%), Postives = 38/55 (69.09%), Query Frame = 1


Query: 19 RPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAK 74
          RPLPKFGEWDVNDP SAEGFTVIF KARD+KKT     +  +     +S  +P K
Sbjct: 13 RPLPKFGEWDVNDPASAEGFTVIFAKARDDKKTNASGRAASQRRDNNKSQDEPTK 67

[Close]

BLAST of CmoCh09G010190 vs. TAIR10
Match: AT3G48450.1 (AT3G48450.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 68.6 bits (166), Expect = 2.4e-12
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 1


Query: 15 GDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKT 52
          G++ RPLPKFGEWD  +P SAEGFTVIFNKARD+KKT
Sbjct: 4  GNRARPLPKFGEWDATNPGSAEGFTVIFNKARDDKKT 40

[Close]

BLAST of CmoCh09G010190 vs. NCBI nr
Match: gi|659126106|ref|XP_008463014.1| (PREDICTED: RPM1-interacting protein 4-like isoform X1 [Cucumis melo])

HSP 1 Score: 141.7 bits (356), Expect = 6.4e-31
Identity = 66/76 (86.84%), Postives = 68/76 (89.47%), Query Frame = 1


Query: 16 DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAP 75
          DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA GR+  DPAKAP
Sbjct: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRTAPDPAKAP 62

Query: 76 PVRYIHNPFSFVLLNG 92
          PVRYIHN F    L+G
Sbjct: 63 PVRYIHNLFPIWALDG 78

[Close]

BLAST of CmoCh09G010190 vs. NCBI nr
Match: gi|659126108|ref|XP_008463015.1| (PREDICTED: RPM1-interacting protein 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 4.7e-26
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 1


Query: 16 DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAP 75
          DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA GR+  DPAKAP
Sbjct: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRTAPDPAKAP 62

Query: 76 PVRYI 81
          P +++
Sbjct: 63 PKKWL 67

[Close]

BLAST of CmoCh09G010190 vs. NCBI nr
Match: gi|449462389|ref|XP_004148923.1| (PREDICTED: RPM1-interacting protein 4-like [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 1.4e-25
Identity = 56/65 (86.15%), Postives = 60/65 (92.31%), Query Frame = 1


Query: 16 DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAP 75
          DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA GR+  DPAK P
Sbjct: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRNAPDPAKTP 62

Query: 76 PVRYI 81
          P +++
Sbjct: 63 PKKWL 67

[Close]

BLAST of CmoCh09G010190 vs. NCBI nr
Match: gi|700188804|gb|KGN44037.1| (hypothetical protein Csa_7G127370 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 5.2e-25
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 1


Query: 16 DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAP 75
          DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA GR+  DPAK P
Sbjct: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRNAPDPAKTP 62

Query: 76 P 77
          P
Sbjct: 63 P 63

[Close]

BLAST of CmoCh09G010190 vs. NCBI nr
Match: gi|568841856|ref|XP_006474872.1| (PREDICTED: uncharacterized protein LOC102627443 [Citrus sinensis])

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-22
Identity = 53/66 (80.30%), Postives = 56/66 (84.85%), Query Frame = 1


Query: 14 VGDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAK 73
          + DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKPDSPGKVD   R G DPAK
Sbjct: 1  MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPDSPGKVDPPIRQGVDPAK 60

Query: 74 APPVRY 80
            P ++
Sbjct: 61 PQPRKW 66

The following BLAST results are available for this feature:

BLAST of CmoCh09G010190 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RIN4_ARATH	5.4e-06	54.05	RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1	[more]

BLAST of CmoCh09G010190 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6Y6_CUCSA	3.6e-25	91.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G127370 PE=4 SV=1	[more]
V4UTF7_9ROSI	1.3e-22	80.30	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010079mg PE=4 SV=1	[more]
A0A067F7I0_CITSI	1.3e-22	80.30	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034970mg PE=4 SV=1	[more]
A0A0D2U289_GOSRA	6.4e-22	76.92	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G451800 PE=4 SV=1	[more]
A0A0D2V2G6_GOSRA	8.4e-22	86.21	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G451800 PE=4 SV=1	[more]

BLAST of CmoCh09G010190 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G55850.2	3.4e-22	75.76	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT2G04410.1	4.5e-19	87.23	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G63270.1	1.4e-12	71.74	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G40645.1	2.4e-12	60.00	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT3G48450.1	2.4e-12	78.38	RPM1-interacting protein 4 (RIN4) family protein	[more]

BLAST of CmoCh09G010190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126106\|ref\|XP_008463014.1\|	6.4e-31	86.84	PREDICTED: RPM1-interacting protein 4-like isoform X1 [Cucumis melo]	[more]
gi\|659126108\|ref\|XP_008463015.1\|	4.7e-26	87.69	PREDICTED: RPM1-interacting protein 4-like isoform X2 [Cucumis melo]	[more]
gi\|449462389\|ref\|XP_004148923.1\|	1.4e-25	86.15	PREDICTED: RPM1-interacting protein 4-like [Cucumis sativus]	[more]
gi\|700188804\|gb\|KGN44037.1\|	5.2e-25	91.80	hypothetical protein Csa_7G127370 [Cucumis sativus]	[more]
gi\|568841856\|ref\|XP_006474872.1\|	1.4e-22	80.30	PREDICTED: uncharacterized protein LOC102627443 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008700	TypeIII_avirulence_cleave

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006810	transport
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G010190.1	CmoCh09G010190.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 16..51 score: 8.0
None	No IPR available	PANTHER	PTHR33159	FAMILY NOT NAMED	coord: 12..62 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh09G010190	CmaCh09G010160	Cucurbita maxima (Rimu)	cmacmoB027
CmoCh09G010190	Cla003318	Watermelon (97103) v1	cmowmB001
CmoCh09G010190	Csa7G127370	Cucumber (Chinese Long) v2	cmocuB030
CmoCh09G010190	MELO3C024949	Melon (DHL92) v3.5.1	cmomeB003
CmoCh09G010190	ClCG09G021410	Watermelon (Charleston Gray)	cmowcgB001
CmoCh09G010190	CSPI07G08380	Wild cucumber (PI 183967)	cmocpiB031
CmoCh09G010190	Lsi02G018190	Bottle gourd (USVL1VR-Ls)	cmolsiB006
CmoCh09G010190	Cp4.1LG06g08430	Cucurbita pepo (Zucchini)	cmocpeB034
CmoCh09G010190	Cp4.1LG02g00550	Cucurbita pepo (Zucchini)	cmocpeB021
CmoCh09G010190	MELO3C024949.2	Melon (DHL92) v3.6.1	cmomedB007
CmoCh09G010190	CsaV3_7G011460	Cucumber (Chinese Long) v3	cmocucB0036
CmoCh09G010190	Cla97C09G182810	Watermelon (97103) v2	cmowmbB035
CmoCh09G010190	Bhi09G001488	Wax gourd	cmowgoB0021
CmoCh09G010190	CsGy7G007880	Cucumber (Gy14) v2	cgybcmoB866
CmoCh09G010190	Carg12880	Silver-seed gourd	carcmoB1211
CmoCh09G010190	Carg22417	Silver-seed gourd	carcmoB1193

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh09G010190	CmoCh01G011130	Cucurbita moschata (Rifu)	cmocmoB018

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh09G010190	Cucurbita maxima (Rimu)	cmacmoB436
CmoCh09G010190	Cucumber (Gy14) v2	cgybcmoB868