CmaCh09G010160 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh09G010160
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	RPM1-interacting protein 4 (RIN4) family protein
Location	Cma_Chr09 : 5205970 .. 5213112 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTAGCCCAATTTACAAAAGTCGCCTCCCTCTCTCTCTCAATCCATCGGTGTTGTTTTCTCTCCTTGATTGATTTGAAATTCCATTTTTTTTTTCCTCGGAAGCGTTTCTCTCTCTAGAATTCATGACGGTATGTTCTCGTTTGATGTCTGCGCCTTAAGGATATTATTACAATTTTGATTTTTTTCTTTGATGTGCTTTTCGATCGGTTCGAGTTTTGCTTCCTGTTGAATTTTCGTTTTCTGATCTGATTCGCCACTTTTGATTTGTTTATTCATTTGATTTCATTAAAGATTGTCCAATTCTGTGTTTCTATGGTTTCCACTTTGATTTTTTTTTTTTATTCGTTTTCCTGAGATTGATGTTGATTGATTCTGGATTAGTTATATTGGGCAGAAATCTGGATTTTTGTGCAAGATTAATTAATTTCTTGAGGTCGTTTCTGAATGAATAATTCTGACCGCTGCATTCAAATATGTACGTAGAGTTGGAGGGAACTTTTTAATTGGTCTATTTTGTTTTGTTTGATTGATTAATATCGATATTTTCAACATCTGTTGCTATAAAGCAATGTTGTATGGTAATAAATGATGGTTGTTAGATTCGTTGTCCGATTGGGAAGGTAAGGCATCAGATTCACCGAGGGTACATCTTGTTGTTCTTTCTTTTTGTAGGACAAAGGTCGGCCATTGCCAAAATTTGGCGAGTGGGATGTTAATGATCCGACATCAGCTGAGGGGTTCACCGTGATTTTTAACAAAGCTAGGGATGAGAAGAAAACAGGCGGCAAACCTGATTCACCTGGAAAAGTTGATGCACAGGGCAGGTCTGGAGCGGATCCTGCCAAGGCACCGCCTGTGAGATACATTCATAATCCTTTTTCTATTGTGCTATTGAATGGTGGTTATAGCTAGCATCTCTATTGATATTAAAGTAGCTGGCATCTAAATAATCCTTCTTTTGCATCTTTGGACAATTGTTTGGTTTATTACTGCCAATGAATTTCTGAGAGTGTTGCTTCTGATAGTGTGGGTGTGTATATATATGTACATATATCTGGGTTGAGCTCTGTTCAAACTTTTGGGAAGTATCTTAATTTGGAATTAAAACGTGCTGGTTAAGTACCCAGAATTAAGCTTTAAGGAGAGATGAAACATGATATCACACCATTTAATGTAACAAAATTTGAATCTCTTTGATTTTATATACCTTGTTAGGTACTGTATGTTCATGAAACATGAATTTCCTAGTTTTTTTTATCTTTGAGAGGGCTCTGGTTCTTGTTGCATAAATGTAGGCCGTCGAATGTAATGACTCGATCTCAGTTCTTGTTGCATAAATGATTAATCTGCAATGTTACCTTACATATTGTATTTACAAGTTTTATTTGGCCTTTTTTCCCCTCGTGGATGATTATCAGAAGAAATGGCTTTGCTGTATCCAAAGTCTCTTTGATTTTATATACCTTGTTAGGCACTTTATGTTCATGAAACATGAATTTCCTAGTTTTGTTTATCTTTGAGAGGGCTCTGGTTCTTGTTGCATAAATGTAGGGGGGTCGAATGTAATGACTTGATCTCAGTTCTTGTTGCATAAATGATTCATCTGCAACGTTACCTTACATATTGTATTTACAAGTTTTATTTGGCCTTTTTTTCCCCCTCGTGTGGATGATTATCAGAAGAAATGGCTTTGCTGTATCCAAAGTCCCCCTGCTGAATCTTGAGAAGGATTCGTTTAGAAGCCTTGGTTGAAAAACAATATTATTCTGTAATTGTGCTACTTTGGCTTCTCAAAGACGATGAACTTTTCATGGAGCCCTGATGTTCCTGCTAAATTTTATGCAATTTCATGTAAAGCTGAGTGTTATTGTTGTGGAGGAAAAAGTAAAGAAGACAAACATGTATTATATTTATATGATTGATATGGTGGTTTTTTATTATAGGATACAGTTGCTATTCTGTCTTTGCCTTTGGTGTGAGCTGTAAAGCTTTGCACTAGACATGATGTATAATTGTGGCTGGTATAATTAATGTATTACAACCTTTTCTTTTCTTGGAAGACAGCCTTTCCCATAACATAAATATTTACTCGACAGGGAAGATTTGAACCTACGACCCACCAAGAAAAGACATTTGATGTCTGGCTTAGTTCTCCCATAACACACAAACTACACAAACTTATAGACACTTGAGAAAATACAATGAATTTATGGTATTCCAAGTTCAGCCAAAAGTTGCAAGGAATGATTAGTAACCTTGGCTTGTGAAGGCTTTCCCCCCGGCCCTTCAATTCTAGTATGACTCTGATTTTGCAGTTCTTTCCTCTGTAGTACCTCGACGTGACATGAGCGTGCAAGAGGTTCTCAAGAATCTGTTTTCCTTTCTTTTATAAGGGAGATTGCAATTGGAAAAAGAGGACGAACGGAGAGGAATAACCAATCGATAAAGGAACATGAAACCATTCTGTTTCAATAGAGGTACGAGAAAGGATTGGGGGCAATGAAGTAGGTGAAGTGGTTATGACTGTTGCGGAGGCTTTGATGGTTGCTAATTGAAGACCGCATAAGTAGGAGGTCTTCATAAACACGTTAAAGAGCTCCTGTCTCGGCAGGTCACCTTTTCAAGACTGAGAAAGGTGAACATCTAGCGCAGTGCGCCTGGCAAATGGCTTGATTTTTTCATGATATACCAATTAGAATGGAGGGCTTTTACAAACCCAAGAAAAGAAAAAGTGAACAATACTTAGCTATAAAACCCAAGGTAACAATTAAAGTAGCAATGAAAAGGCAATACAAGTGGCTAGGGCCAATGTAAAGGATTTAATAGTCAGGGAGCTTGGTATCTTGCCTTTATCTGTTCTAAAGAAAAGCCCTTCGTACAAAGGCCAATTAATTACAACCAGAGTTCCACACAGAACAACCTGCAAAGCCATTGCTTGAAAGGTCATAACCAAACCACTGCCACTCTCTACTGCTTTCTTCACCATCCCAAGAAAGCACAGCAAATTAACCAATGAAACTGTTGCTATTATAGTAAACATTGGAGAGGAAGCTCCAAATTCCATGATCTCCTTTTCATATCGTTCCGAGGCTTCTTGATCGGTCACTTTAGCTGTGATTACAAACGCTGAATCCGACAATCCAATTATCTTCAAGACAGTATCGATAAGAGCAAAGAGATAGGAACTTGTTCTCTTGTATAGCCAAATCCTCTGTTCATTCCACCAACCCAAGATTGTTCCTCCAGCCAACAAATACTCCACCAAACTACCAGCATACTTAGCAAATATCACATATGTGAAAGGTATCAGCCAAGGGCTTGAAACCTGAGTGCACAAAGTAGTCAGCGCTCAGTGGTAAGTCGGCCAACAGTTTCGGTTCGTATGAAGTGTAAGAGAGGCAGGAAAGTTATGTACCTGGGGAAACAAGGGAATGCCTCTGAGGAGATAAAGTGAGGGGATTATGGAGTAATATAATGTTGCCAAGGAATTAACAGCCCAGAGACAAAAGGTACAATATCCCATTCGTAGGCCTAGGCTGATCTTTCCACGAGCATACCGTGCGGGACTGTACCTCGAAAGAAGAATTTGGAGGTCACCTTCCGACCATCGCTTATGTTGAACTAGTGTCTGGATTAATGAGGTTGGTGCAACACCTAGGAAGGCTCCCCTCTCTGGATTGCAGTAAATTGATTTCCATCCCTGGCTTTGTATTGACAACCCTGTTATAACATCTTCTACAGGACATCCATATCTCAAACCCATCTGCAATTAAAAAGTTGATGATCAGACTCAGAAATGTGAGAGAGGAATGTAATATAAGGAGAAACTGGCCTCTTTTCCCCATTCAGTGTTCTCTTCATATGAACAGCTTGCTAGATGCTTCGATTTTTCTTCGAGTTCATTTACATCGTCTCCCGAGTTCCTATAGTCCTTACTGTTCCAATCATTTCTGTATCCTTTGCTGTACTTTTTACCACATAGAACATCTCTTCTATGAAAGCAGCCTGTTCCAATATATAGAGGGCCTCCAAAACTATCCAAACCGGGCAGTTCGACCTTCACAGGACAAAATCATTTACATTACTGGAACTAAGTTACCATAAACTTTTTGAACTTTCTGGACGATATCGACTTACCTCATTAATGACCCGTAAACTACTTGCATAGATCTCGTTCTTGGTTATGTTATCAAACAATTGTGGAAACTGCACATATGCAATCTCATGGCCCTTTTCTTCATCCATTAAGAAGCAAAGTGCATCTCTTATGGCATCAGAGTTGTTTGAATACATATCACAGTCTACATTGAGTATGATTTGCCCATTGCTGATCTGTGACGAGACCCTAAGCTGAAAATGGAACCAATGACAACCAGGTTAGGTACTTACATCAAATGTGTGGAAACGAGTGATAATCGGTGCATTAGCTTGATATTAGGTGCTATTTTAGTATTCTCATCGATGTCGGCTTCTGTGAAGGTTATAGATTAGTCTGTCTCTCTATATCTTTACATATTCATGTAGATAATTACCAAGGCATTCATAGCTCCAGCCTTGAAGTTATGGAAATATCGAGGTCTCTTCTCACGAGCCAAATACACCAAAGTTGGTAACACAGACCCTTCAACGTCCTTAGCTTTTGGATCTCTTCCATCTATGACTATCTGGGATGTTGAGAACAGAGAATCAAATATTAGAAAGACTGTGCAAAGATTTAAGATGATTGTAAGGTCCAAGCAACAGATGTTACCTGAAGGAACGTATTGTGGTCTTTACGAGATGCATAGGATTCCCACTGGGAAAATCCTTTGCTACTCGACTGTATTTCGTCAGGAACCCGGCCTAGTTTGACTGCATAATTGATTCTATTCTCCATATCCTTGTATAGTGTCTGCAAAAGAAGAAACCATCCAGGTAAAGGCAGCCATTAATAGCGTTGTGTCCTGTGATCCATAGTTGAGTTTTTGATTCAGAAGCAATAAGGCTTGATTTTCCTGGATGTAAAATAACCTGAATGAAGTCCACTTCTTTGCCCTGATGATCTATGTGTGAGGCAAAGTAAGCTGCAGGTGACCTTGGCTGGATGTTGAACTTCTTGCAGAATGGTATCCAGTGCTTTGCAAATTGAGAGGCCTCCATGAGAGCATAGTAGGTGAGCTTGGAGCTTGCGTCGTCGGAGAGGTACACGCTGAGCTTCTCAGGCGGGTAATCGTATGCCATGACTGATAATACTGTGCTGATGACCATAGCTGGTGGCTCCATCTCCGGATCTGCTGTGCACACAAATATGTCCACTCCTGGAAACTCTCCCTCATGCCTGTCATCAACAATACCCCTTTTCAAACTTGGCATAAACCAACTGAGAGAAACTAAGACAGAGAGAGAGAGCCTATTCCACAACAATATCCCATTTCCAAGCATCAAAGAAAACCAGTAAAAGGAACAAAGAGGAGAAAGTGACAGCTTGTTTCACAACATTATATTGTGTTGTTTTATCCACCCCGCTACCGCAACTACTAGCTGATATTGTCCTCTTTGAGCCTTTCCTTCTGGTTTTCCTAAAAGATTTTAAAACACATCTGCTAGGGAGAGGTCTCTACCTCCCAGTTCTCCTTTCCAATCAACGTGGGATCTCACAATCCACCCTCTTAGGGGCCCAATGTCCTCGTTGGCACACTGCTCGGTGTCTGACTCTGATACCATTTGTAACAGACCAACCCAACCACTAGTAGATATTGTCTTCTTTAGATTTTCCCTTTTGGGCTTTCCCTTCTGGACTTCTTCTCAAGATTTTAAAACGCATATGCTAGAGAGAGGTTTCTACACCCTTGTAAGGAACGTTTTGATCCCCTCTCCAACCGATGTGGGATCTCACAATCCATCCCCTTTGGGACCCAGCGTTCTCGCTGGCACATCACTCGGTGTCTAGCTCTAATACCATTTGTAACCGTCCAAGCTCACTTCTAGCAGATATTGTCCTATTTGGGCTTTCCCTTTTAGGCTTCCCCTCAAGGTTTTAAAACACCTCTGTTAGAGAGAGGTTTCCACACCCTTATAAGGAATGTTTCGTTCCCCTCTCCAACCGATGTAGGATCTCACAGTTTCAAAGCGTCTGTCAAAAAGAGGTTTCCAAACCCTTATAAGGAATGTTTCATTCCTCTCTACAACCAATGTAGGATCTCACAGTTTCAAAGCGTTTGTTAGAGAGAGGTTTCCACACCCTTATAAGGAATGTTTCGTTCCCCTCTCCAACCAATGTAGGATCTCACAGTTTCAAAGCGTTTGTTAGAGAGAGGTTTCCACACCCTTATAAGGAATGTTTCGTTCCCGATGTAGGATCTCACAGTTTCAAAGCCTCTGTTAGAGAGAGGTTTCCACACCCTTATAAAGAATGTTTCGTTTCCTTTTCCAACTAGTGCAGGATCTCACAGTTTCAAACACCTTAGAATCTAAACTAAGTGAAAGAACATAAGAGAAAGAAGGGAGAGAGAGAGAGAAAGAAAGTGAAGCCTTTTCCACAAGCAATATTCCATTTGAAGAGAGAGAGAGGCAGACCTTTGTGAGAGCTTGTGTTTAAAGGTGCGCCTACGAATTGGATTCCAGCGAGGAGCCTGAGTGATAACCCAATAAAACCCAAACCATATCTCAGCAGCAAACAAACCAAGCCAACCCAATCTTCTTCCTCCTCCTTCTGCTACAAACTTCACTCTGTAACTCCAAATCAAACAAATCCCCACAAAAATGGAAGCTGCAAATACCCTATAAACAACTCTCCCCTTCACTGCTTTCGTCTCAAACAACGGAGAATACCCTTCACTCTCCATGGTCTCTCCCCTCTTCCTCTCTAAGCACCAATGAATATATACCCTTCAATGGTTTCTTACATTATACTTGCAATAAGCTTGTTTTCATCCACCTTTTTCAATGTAAATTATGCAGGAATGAGAAGTGAAGGATTGAAGATCGGTTGATTGATTGATGAGTGGTGTCCAAAGACTTGCATCAACAAGAAGCTAAGGCCATGGGCATGTCCAGGTGATGAAGAGGTGAGCGGCGGCAGGGGCAGAGCAATGAGCAGAAGAAGCCATGACAAAAGGATGCCTCAGGTATAAACAACAAAAATGATAAAGGGAGATGATT

mRNA sequence

CTTTTAGCCCAATTTACAAAAGTCGCCTCCCTCTCTCTCTCAATCCATCGGTGTTGTTTTCTCTCCTTGATTGATTTGAAATTCCATTTTTTTTTTCCTCGGAAGCGTTTCTCTCTCTAGAATTCATGACGGACAAAGGTCGGCCATTGCCAAAATTTGGCGAGTGGGATGTTAATGATCCGACATCAGCTGAGGGGTTCACCGTGATTTTTAACAAAGCTAGGGATGAGAAGAAAACAGGCGGCAAACCTGATTCACCTGGAAAAGTTGATGCACAGGGCAGGTCTGGAGCGGATCCTGCCAAGGCACCGCCTTGTGGAAGAAATGGCTTTGCTGTATCCAAAGTCCCCCTGCTGAATCTTGAGAAGGATTCGTTTAGAAGCCTTGGTTGAAAAACAATATTATTCTGTAATTGTGCTACTTTGGCTTCTCAAAGACGATGAACTTTTCATGGAGCCCTGATGTTCCTGCTAAATTTTATGCAATTTCATGTAAAGCTGAGTGTTATTGTTGTGGAGGAAAAAGTAAAGAAGACAAACATGTATTATATTTATATGATTGATATGGTGGTTTTTTATTATAGGATACAGTTGCTATTCTGTCTTTGCCTTTGGTGTGAGCTGTAAAGCTTTGCACTAGACATGATGTATAATTGTGGCTGGTATAATTAATGTATTACAACCTTTTCTTTTCTTGGAAGACAGCCTTTCCCATAACATAAATATTTACTCGACAGGGAAGATTTGAACCTACGACCCACCAAGAAAAGACATTTGATGTCTGGCTTAGTTCTCCCATAACACACAAACTACACAAACTTATAGACACTTGAGAAAATACAATGAATTTATGGTATTCCAAGTTCAGCCAAAAGTTGCAAGGAATGATTAGTAACCTTGGCTTGTGAAGGCTTTCCCCCCGGCCCTTCAATTCTAGTATGACTCTGATTTTGCAGTTCTTTCCTCTGTAGTACCTCGACGTGACATGAGCGTGCAAGAGGTTCTCAAGAATCTGTTTTCCTTTCTTTTATAAGGGAGATTGCAATTGGAAAAAGAGGACGAACGGAGAGGAATAACCAATCGATAAAGGAACATGAAACCATTCTGTTTCAATAGAGGTACGAGAAAGGATTGGGGGCAATGAAGTAGGTGAAGTGGTTATGACTGTTGCGGAGGCTTTGATGGTTGCTAATTGAAGACCGCATAAGTAGGAGGTCTTCATAAACACGTTAAAGAGCTCCTGTCTCGGCAGGTCACCTTTTCAAGACTGAGAAAGGTGAACATCTAGCGCAGTGCGCCTGGCAAATGGCTTGATTTTTTCATGATATACCAATTAGAATGGAGGGCTTTTACAAACCCAAGAAAAGAAAAAGTGAACAATACTTAGCTATAAAACCCAAGGTAACAATTAAAGTAGCAATGAAAAGGCAATACAAGTGGCTAGGGCCAATGTAAAGGATTTAATAGTCAGGGAGCTTGGTATCTTGCCTTTATCTGTTCTAAAGAAAAGCCCTTCGTACAAAGGCCAATTAATTACAACCAGAGTTCCACACAGAACAACCTGCAAAGCCATTGCTTGAAAGGTCATAACCAAACCACTGCCACTCTCTACTGCTTTCTTCACCATCCCAAGAAAGCACAGCAAATTAACCAATGAAACTGTTGCTATTATAGTAAACATTGGAGAGGAAGCTCCAAATTCCATGATCTCCTTTTCATATCGTTCCGAGGCTTCTTGATCGGTCACTTTAGCTGTGATTACAAACGCTGAATCCGACAATCCAATTATCTTCAAGACAGTATCGATAAGAGCAAAGAGATAGGAACTTGTTCTCTTGTATAGCCAAATCCTCTGTTCATTCCACCAACCCAAGATTGTTCCTCCAGCCAACAAATACTCCACCAAACTACCAGCATACTTAGCAAATATCACATATGTGAAAGGTATCAGCCAAGGGCTTGAAACCTGAGTGCACAAAGTAGTCAGCGCTCAGTGGTAAGTCGGCCAACAGTTTCGGTTCGTATGAAGTGTAAGAGAGGCAGGAAAGTTATGTACCTGGGGAAACAAGGGAATGCCTCTGAGGAGATAAAGTGAGGGGATTATGGAGTAATATAATGTTGCCAAGGAATTAACAGCCCAGAGACAAAAGGTACAATATCCCATTCGTAGGCCTAGGCTGATCTTTCCACGAGCATACCGTGCGGGACTGTACCTCGAAAGAAGAATTTGGAGGTCACCTTCCGACCATCGCTTATGTTGAACTAGTGTCTGGATTAATGAGGTTGGTGCAACACCTAGGAAGGCTCCCCTCTCTGGATTGCAGTAAATTGATTTCCATCCCTGGCTTTGTATTGACAACCCTGTTATAACATCTTCTACAGGACATCCATATCTCAAACCCATCTGCAATTAAAAAGTTGATGATCAGACTCAGAAATGTGAGAGAGGAATGTAATATAAGGAGAAACTGGCCTCTTTTCCCCATTCAGTGTTCTCTTCATATGAACAGCTTGCTAGATGCTTCGATTTTTCTTCGAGTTCATTTACATCGTCTCCCGAGTTCCTATAGTCCTTACTGTTCCAATCATTTCTGTATCCTTTGCTGTACTTTTTACCACATAGAACATCTCTTCTATGAAAGCAGCCTGTTCCAATATATAGAGGGCCTCCAAAACTATCCAAACCGGGCAGTTCGACCTTCACAGGACAAAATCATTTACATTACTGGAACTAAGTTACCATAAACTTTTTGAACTTTCTGGACGATATCGACTTACCTCATTAATGACCCGTAAACTACTTGCATAGATCTCGTTCTTGGTTATGTTATCAAACAATTGTGGAAACTGCACATATGCAATCTCATGGCCCTTTTCTTCATCCATTAAGAAGCAAAGTGCATCTCTTATGGCATCAGAGTTGTTTGAATACATATCACAGTCTACATTGAGTATGATTTGCCCATTGCTGATCTGTGACGAGACCCTAAGCTGAAAATGGAACCAATGACAACCAGGTTAGGTACTTACATCAAATGTGTGGAAACGAGTGATAATCGGTGCATTAGCTTGATATTAGGTGCTATTTTAGTATTCTCATCGATGTCGGCTTCTGTGAAGGTTATAGATTAGTCTGTCTCTCTATATCTTTACATATTCATGTAGATAATTACCAAGGCATTCATAGCTCCAGCCTTGAAGTTATGGAAATATCGAGGTCTCTTCTCACGAGCCAAATACACCAAAGTTGGTAACACAGACCCTTCAACGTCCTTAGCTTTTGGATCTCTTCCATCTATGACTATCTGGGATGTTGAGAACAGAGAATCAAATATTAGAAAGACTGTGCAAAGATTTAAGATGATTGTAAGGTCCAAGCAACAGATGTTACCTGAAGGAACGTATTGTGGTCTTTACGAGATGCATAGGATTCCCACTGGGAAAATCCTTTGCTACTCGACTGTATTTCGTCAGGAACCCGGCCTAGTTTGACTGCATAATTGATTCTATTCTCCATATCCTTGTATAGTGTCTGCAAAAGAAGAAACCATCCAGGTAAAGGCAGCCATTAATAGCGTTGTGTCCTGTGATCCATAGTTGAGTTTTTGATTCAGAAGCAATAAGGCTTGATTTTCCTGGATGTAAAATAACCTGAATGAAGTCCACTTCTTTGCCCTGATGATCTATGTGTGAGGCAAAGTAAGCTGCAGGTGACCTTGGCTGGATGTTGAACTTCTTGCAGAATGGTATCCAGTGCTTTGCAAATTGAGAGGCCTCCATGAGAGCATAGTAGGTGAGCTTGGAGCTTGCGTCGTCGGAGAGGTACACGCTGAGCTTCTCAGGCGGGTAATCGTATGCCATGACTGATAATACTGTGCTGATGACCATAGCTGGTGGCTCCATCTCCGGATCTGCTGTGCACACAAATATGTCCACTCCTGGAAACTCTCCCTCATGCCTGTCATCAACAATACCCCTTTTCAAACTTGGCATAAACCAACTGAGAGAAACTAAGACAGAGAGAGAGAGCCTATTCCACAACAATATCCCATTTCCAAGCATCAAAGAAAACCAGTAAAAGGAACAAAGAGGAGAAAGTGACAGCTTGTTTCACAACATTATATTGTGTTGTTTTATCCACCCCGCTACCGCAACTACTAGCTGATATTGTCCTCTTTGAGCCTTTCCTTCTGGTTTTCCTAAAAGATTTTAAAACACATCTGCTAGGGAGAGGTCTCTACCTCCCAGTTCTCCTTTCCAATCAACGTGGGATCTCACAATCCACCCTCTTAGGGGCCCAATGTCCTCGTTGGCACACTGCTCGGTGTCTGACTCTGATACCATTTGTAACAGACCAACCCAACCACTAGTAGATATTGTCTTCTTTAGATTTTCCCTTTTGGGCTTTCCCTTCTGGACTTCTTCTCAAGATTTTAAAACGCATATGCTAGAGAGAGGTTTCTACACCCTTGTAAGGAACGTTTTGATCCCCTCTCCAACCGATGTGGGATCTCACAATCCATCCCCTTTGGGACCCAGCGTTCTCGCTGGCACATCACTCGGTGTCTAGCTCTAATACCATTTGTAACCGTCCAAGCTCACTTCTAGCAGATATTGTCCTATTTGGGCTTTCCCTTTTAGGCTTCCCCTCAAGGTTTTAAAACACCTCTGTTAGAGAGAGGTTTCCACACCCTTATAAGGAATGTTTCGTTCCCCTCTCCAACCGATGTAGGATCTCACAGTTTCAAAGCGTCTGTCAAAAAGAGGTTTCCAAACCCTTATAAGGAATGTTTCATTCCTCTCTACAACCAATGTAGGATCTCACAGTTTCAAAGCGTTTGTTAGAGAGAGGTTTCCACACCCTTATAAGGAATGTTTCGTTCCCCTCTCCAACCAATGTAGGATCTCACAGTTTCAAAGCGTTTGTTAGAGAGAGGTTTCCACACCCTTATAAGGAATGTTTCGTTCCCGATGTAGGATCTCACAGTTTCAAAGCCTCTGTTAGAGAGAGGTTTCCACACCCTTATAAAGAATGTTTCGTTTCCTTTTCCAACTAGTGCAGGATCTCACAGTTTCAAACACCTTAGAATCTAAACTAAGTGAAAGAACATAAGAGAAAGAAGGGAGAGAGAGAGAGAAAGAAAGTGAAGCCTTTTCCACAAGCAATATTCCATTTGAAGAGAGAGAGAGGCAGACCTTTGTGAGAGCTTGTGTTTAAAGGTGCGCCTACGAATTGGATTCCAGCGAGGAGCCTGAGTGATAACCCAATAAAACCCAAACCATATCTCAGCAGCAAACAAACCAAGCCAACCCAATCTTCTTCCTCCTCCTTCTGCTACAAACTTCACTCTGTAACTCCAAATCAAACAAATCCCCACAAAAATGGAAGCTGCAAATACCCTATAAACAACTCTCCCCTTCACTGCTTTCGTCTCAAACAACGGAGAATACCCTTCACTCTCCATGGAATGAGAAGTGAAGGATTGAAGATCGGTTGATTGATTGATGAGTGGTGTCCAAAGACTTGCATCAACAAGAAGCTAAGGCCATGGGCATGTCCAGGTGATGAAGAGGTGAGCGGCGGCAGGGGCAGAGCAATGAGCAGAAGAAGCCATGACAAAAGGATGCCTCAGGTATAAACAACAAAAATGATAAAGGGAGATGATT

Coding sequence (CDS)

ATGACGGACAAAGGTCGGCCATTGCCAAAATTTGGCGAGTGGGATGTTAATGATCCGACATCAGCTGAGGGGTTCACCGTGATTTTTAACAAAGCTAGGGATGAGAAGAAAACAGGCGGCAAACCTGATTCACCTGGAAAAGTTGATGCACAGGGCAGGTCTGGAGCGGATCCTGCCAAGGCACCGCCTTGTGGAAGAAATGGCTTTGCTGTATCCAAAGTCCCCCTGCTGAATCTTGAGAAGGATTCGTTTAGAAGCCTTGGTTGA

Protein sequence

MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAPPCGRNGFAVSKVPLLNLEKDSFRSLG

Homology

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BLAST of CmaCh09G010160 vs. TrEMBL
Match: A0A0A0K6Y6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G127370 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.1e-30
Identity = 72/100 (72.00%), Postives = 74/100 (74.00%), Query Frame = 1


Query: 1   MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAK 60
           MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA GR+  DPAK
Sbjct: 1   MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRNAPDPAK 60

Query: 61  APPCG-------------------RNGFAVSKVPLLNLEK 82
            PP                     RNGFAV KVPLLNL+K
Sbjct: 61  TPPNATCVPLGNWFCLLLASDSVIRNGFAVFKVPLLNLKK 100

[Close]

BLAST of CmaCh09G010160 vs. TrEMBL
Match: A0A067F7I0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034970mg PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-22
Identity = 54/63 (85.71%), Postives = 55/63 (87.30%), Query Frame = 1


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAK 60
          M+DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKPDSPGKVD   R G DPAK
Sbjct: 1  MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPDSPGKVDPPIRHGVDPAK 60

Query: 61 APP 64
            P
Sbjct: 61 PQP 63

[Close]

BLAST of CmaCh09G010160 vs. TrEMBL
Match: V4UTF7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010079mg PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-22
Identity = 54/63 (85.71%), Postives = 55/63 (87.30%), Query Frame = 1


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAK 60
          M+DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKPDSPGKVD   R G DPAK
Sbjct: 1  MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPDSPGKVDPPIRHGVDPAK 60

Query: 61 APP 64
            P
Sbjct: 61 PQP 63

[Close]

BLAST of CmaCh09G010160 vs. TrEMBL
Match: A0A068UZK5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00038741001 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 6.0e-22
Identity = 53/75 (70.67%), Postives = 59/75 (78.67%), Query Frame = 1


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAK 60
          M++KGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP+SP K DA  + G DP K
Sbjct: 1  MSEKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPESPSKADAAAKQGVDPVK 60

Query: 61 APPCGRNGFAVSKVP 76
            P G+N F   + P
Sbjct: 61 --PQGKNWFCCMQSP 73

[Close]

BLAST of CmaCh09G010160 vs. TrEMBL
Match: A0A0J8CLT9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g090660 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.7e-21
Identity = 51/63 (80.95%), Postives = 54/63 (85.71%), Query Frame = 1


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAK 60
          MTDKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP+SPGK     RSG +P K
Sbjct: 1  MTDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPESPGKSQPTSRSGMEPTK 60

Query: 61 APP 64
          + P
Sbjct: 61 SQP 63

[Close]

BLAST of CmaCh09G010160 vs. TAIR10
Match: AT5G55850.2 (AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 97.1 bits (240), Expect = 5.9e-21
Identity = 49/64 (76.56%), Postives = 52/64 (81.25%), Query Frame = 1


Query: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGR---SGADPA 62
          DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPGK  ++G     G DP+
Sbjct: 19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGK-SSEGHVKSGGGDPS 78

Query: 63 KAPP 64
          K  P
Sbjct: 79 KPQP 81

[Close]

BLAST of CmaCh09G010160 vs. TAIR10
Match: AT2G04410.1 (AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 92.0 bits (227), Expect = 1.9e-19
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 1


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGK 48
          M DKGRPLPKFGEWDVNDP+SAEGFTVIFNKAR+EKK GGK DSPGK
Sbjct: 1  MADKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDSPGK 47

[Close]

BLAST of CmaCh09G010160 vs. TAIR10
Match: AT5G63270.1 (AT5G63270.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 68.9 bits (167), Expect = 1.7e-12
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 1


Query: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKT----GGKPDS 45
          +KG+PLPKFGEWDVN+P SAEGFTVIF+KA DEKKT    G  P+S
Sbjct: 4  NKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNS 49

[Close]

BLAST of CmaCh09G010160 vs. TAIR10
Match: AT5G40645.1 (AT5G40645.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 67.8 bits (164), Expect = 3.9e-12
Identity = 34/59 (57.63%), Postives = 39/59 (66.10%), Query Frame = 1


Query: 6  RPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAPPC 65
          RPLPKFGEWDVNDP SAEGFTVIF KARD+KKT     +  +     +S  +P K   C
Sbjct: 13 RPLPKFGEWDVNDPASAEGFTVIFAKARDDKKTNASGRAASQRRDNNKSQDEPTKKRFC 71

[Close]

BLAST of CmaCh09G010160 vs. TAIR10
Match: AT3G48450.1 (AT3G48450.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 65.9 bits (159), Expect = 1.5e-11
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 1


Query: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKT 39
          ++ RPLPKFGEWD  +P SAEGFTVIFNKARD+KKT
Sbjct: 5  NRARPLPKFGEWDATNPGSAEGFTVIFNKARDDKKT 40

[Close]

BLAST of CmaCh09G010160 vs. NCBI nr
Match: gi|700188804|gb|KGN44037.1| (hypothetical protein Csa_7G127370 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 3.0e-30
Identity = 72/100 (72.00%), Postives = 74/100 (74.00%), Query Frame = 1


Query: 1   MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAK 60
           MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA GR+  DPAK
Sbjct: 1   MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRNAPDPAK 60

Query: 61  APPCG-------------------RNGFAVSKVPLLNLEK 82
            PP                     RNGFAV KVPLLNL+K
Sbjct: 61  TPPNATCVPLGNWFCLLLASDSVIRNGFAVFKVPLLNLKK 100

[Close]

BLAST of CmaCh09G010160 vs. NCBI nr
Match: gi|659126108|ref|XP_008463015.1| (PREDICTED: RPM1-interacting protein 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 126.3 bits (316), Expect = 2.6e-26
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 1


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAK 60
          MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA GR+  DPAK
Sbjct: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRTAPDPAK 60

Query: 61 APP 64
          APP
Sbjct: 61 APP 63

[Close]

BLAST of CmaCh09G010160 vs. NCBI nr
Match: gi|659126106|ref|XP_008463014.1| (PREDICTED: RPM1-interacting protein 4-like isoform X1 [Cucumis melo])

HSP 1 Score: 126.3 bits (316), Expect = 2.6e-26
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 1


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAK 60
          MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA GR+  DPAK
Sbjct: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRTAPDPAK 60

Query: 61 APP 64
          APP
Sbjct: 61 APP 63

[Close]

BLAST of CmaCh09G010160 vs. NCBI nr
Match: gi|449462389|ref|XP_004148923.1| (PREDICTED: RPM1-interacting protein 4-like [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 7.5e-26
Identity = 58/63 (92.06%), Postives = 59/63 (93.65%), Query Frame = 1


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAK 60
          MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA GR+  DPAK
Sbjct: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRNAPDPAK 60

Query: 61 APP 64
           PP
Sbjct: 61 TPP 63

[Close]

BLAST of CmaCh09G010160 vs. NCBI nr
Match: gi|568841856|ref|XP_006474872.1| (PREDICTED: uncharacterized protein LOC102627443 [Citrus sinensis])

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-22
Identity = 54/63 (85.71%), Postives = 55/63 (87.30%), Query Frame = 1


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAK 60
          M+DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKPDSPGKVD   R G DPAK
Sbjct: 1  MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPDSPGKVDPPIRQGVDPAK 60

Query: 61 APP 64
            P
Sbjct: 61 PQP 63

The following BLAST results are available for this feature:

BLAST of CmaCh09G010160 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh09G010160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6Y6_CUCSA	2.1e-30	72.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G127370 PE=4 SV=1	[more]
A0A067F7I0_CITSI	1.2e-22	85.71	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034970mg PE=4 SV=1	[more]
V4UTF7_9ROSI	1.2e-22	85.71	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010079mg PE=4 SV=1	[more]
A0A068UZK5_COFCA	6.0e-22	70.67	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00038741001 PE=4 SV=1	[more]
A0A0J8CLT9_BETVU	1.7e-21	80.95	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g090660 PE=4 S...	[more]

BLAST of CmaCh09G010160 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G55850.2	5.9e-21	76.56	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT2G04410.1	1.9e-19	89.36	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G63270.1	1.7e-12	71.74	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G40645.1	3.9e-12	57.63	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT3G48450.1	1.5e-11	77.78	RPM1-interacting protein 4 (RIN4) family protein	[more]

BLAST of CmaCh09G010160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188804\|gb\|KGN44037.1\|	3.0e-30	72.00	hypothetical protein Csa_7G127370 [Cucumis sativus]	[more]
gi\|659126108\|ref\|XP_008463015.1\|	2.6e-26	93.65	PREDICTED: RPM1-interacting protein 4-like isoform X2 [Cucumis melo]	[more]
gi\|659126106\|ref\|XP_008463014.1\|	2.6e-26	93.65	PREDICTED: RPM1-interacting protein 4-like isoform X1 [Cucumis melo]	[more]
gi\|449462389\|ref\|XP_004148923.1\|	7.5e-26	92.06	PREDICTED: RPM1-interacting protein 4-like [Cucumis sativus]	[more]
gi\|568841856\|ref\|XP_006474872.1\|	1.3e-22	85.71	PREDICTED: uncharacterized protein LOC102627443 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008700	TypeIII_avirulence_cleave

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G010160.1	CmaCh09G010160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 3..38 score: 6.4
None	No IPR available	PANTHER	PTHR33159	FAMILY NOT NAMED	coord: 1..49 score: 5.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh09G010160	Cla003318	Watermelon (97103) v1	cmawmB009
CmaCh09G010160	Csa7G127370	Cucumber (Chinese Long) v2	cmacuB041
CmaCh09G010160	MELO3C024949	Melon (DHL92) v3.5.1	cmameB014
CmaCh09G010160	ClCG09G021410	Watermelon (Charleston Gray)	cmawcgB007
CmaCh09G010160	CSPI07G08380	Wild cucumber (PI 183967)	cmacpiB041
CmaCh09G010160	CmoCh09G010190	Cucurbita moschata (Rifu)	cmacmoB027
CmaCh09G010160	CmoCh01G011130	Cucurbita moschata (Rifu)	cmacmoB048
CmaCh09G010160	Lsi02G018190	Bottle gourd (USVL1VR-Ls)	cmalsiB018
CmaCh09G010160	Cp4.1LG02g00550	Cucurbita pepo (Zucchini)	cmacpeB046
CmaCh09G010160	Cp4.1LG06g08430	Cucurbita pepo (Zucchini)	cmacpeB060
CmaCh09G010160	MELO3C024949.2	Melon (DHL92) v3.6.1	cmamedB019
CmaCh09G010160	CsaV3_7G011460	Cucumber (Chinese Long) v3	cmacucB0050
CmaCh09G010160	Cla97C09G182810	Watermelon (97103) v2	cmawmbB048
CmaCh09G010160	Bhi09G001488	Wax gourd	cmawgoB0027
CmaCh09G010160	CsGy7G007880	Cucumber (Gy14) v2	cgybcmaB884
CmaCh09G010160	Carg12880	Silver-seed gourd	carcmaB1240
CmaCh09G010160	Carg22417	Silver-seed gourd	carcmaB1223

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh09G010160	Wild cucumber (PI 183967)	cmacpiB046
CmaCh09G010160	Cucumber (Chinese Long) v2	cmacuB044
CmaCh09G010160	Melon (DHL92) v3.5.1	cmameB015
CmaCh09G010160	Cucumber (Gy14) v2	cgybcmaB886
CmaCh09G010160	Cucumber (Gy14) v2	cgybcmaB888
CmaCh09G010160	Melon (DHL92) v3.6.1	cmamedB015
CmaCh09G010160	Silver-seed gourd	carcmaB0601
CmaCh09G010160	Cucumber (Chinese Long) v3	cmacucB0054
CmaCh09G010160	Cucurbita maxima (Rimu)	cmacmaB052