Cp4.1LG02g00550 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG02g00550
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RPM1-interacting 4-like protein
Location	Cp4.1LG02 : 5299142 .. 5300024 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TATATATAGGAAAAGGATTTTCCGTATCCAATAAGACCACTTTTGCCCCAATTTACAAAAGTCGCCTCTTCTACTCTCTCAATCCGTCTTTGTTATTTTCTCTCATTCATTGTTTTCAAATTCATTTCTTTTTCCTCGGAATCGTTCTCTCTGGAATTCATGGCGGTATGTCATCGCTTGATTAATGTTTTGTAAGGATTTTTGTTTTTTTGTTCTTGCTTTCATGTGCTTCTCGATCGGTATGAGCTTTTCTTCCTGCTGAATTTTCCGTTTTCTTGCTTCGATTCGCCAATTTGATTTGTTTGTTTGTTTGATTTCCTTGAGGATTGTTCAATTCCGGGTTTGAATGGTTTGCGCTTTGATTTATTTGTTCCTTTTCCTGATTTTCAAGCTGTTCTAGTTTTATTCGGACGAAAATCTGGATTTTAATTCGTTGTTCGAGGTCGTTTCTAAACTTTCAATCGATAAATCGTTGGCTACATTTAGATATATTGTGCTCTTGGAGCAAACTTTTTAATTGGTCCATTGTTTATTGTTTGATGGATTCGTATTAGATTTGAAGGTATTTACTAAATCTGTAGCCATGAAGCAATATTGTATAGATGTTAGATTCATAGTCTGTTTGTTAATGAAAGTTACCAGATTCACAGAGGGTACATTTTGCTATTCTCTCTTTCTGTAGGACAAGGGTCGGCCATTGCCCAAATTTGGTGAGTGGGATGTTAATGATCCGACATCTGCTGAGGGATTTACTGTGATTTTTAACAAAGCTAGAGATGAGAAGAAAACAGGCGGCAAACCTGATTCACCTGGAAAAGTTGATGCACAGGGCAGGCCTGGAGCAAATCCTGCCAAGGCACCGCCTGTAAGATATCATTCATAA

mRNA sequence

TATATATAGGAAAAGGATTTTCCGTATCCAATAAGACCACTTTTGCCCCAATTTACAAAAGTCGCCTCTTCTACTCTCTCAATCCGTCTTTGTTATTTTCTCTCATTCATTGTTTTCAAATTCATTTCTTTTTCCTCGGAATCGTTCTCTCTGGAATTCATGGCGGACAAGGGTCGGCCATTGCCCAAATTTGGTGAGTGGGATGTTAATGATCCGACATCTGCTGAGGGATTTACTGTGATTTTTAACAAAGCTAGAGATGAGAAGAAAACAGGCGGCAAACCTGATTCACCTGGAAAAGTTGATGCACAGGGCAGGCCTGGAGCAAATCCTGCCAAGGCACCGCCTGTAAGATATCATTCATAA

Coding sequence (CDS)

ATGGCGGACAAGGGTCGGCCATTGCCCAAATTTGGTGAGTGGGATGTTAATGATCCGACATCTGCTGAGGGATTTACTGTGATTTTTAACAAAGCTAGAGATGAGAAGAAAACAGGCGGCAAACCTGATTCACCTGGAAAAGTTGATGCACAGGGCAGGCCTGGAGCAAATCCTGCCAAGGCACCGCCTGTAAGATATCATTCATAA

Protein sequence

MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAPPVRYHS

Homology

[Close]

BLAST of Cp4.1LG02g00550 vs. Swiss-Prot
Match: RIN4_ARATH (RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.1e-06
Identity = 20/37 (54.05%), Postives = 30/37 (81.08%), Query Frame = 1


Query: 3   DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTG 40
           +K   +PKFG+WD N+P+SA+G+T IFNK R+E+ +G
Sbjct: 143 EKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSG 179

[Close]

BLAST of Cp4.1LG02g00550 vs. TrEMBL
Match: A0A0A0K6Y6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G127370 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.2e-24
Identity = 56/63 (88.89%), Postives = 57/63 (90.48%), Query Frame = 1


Query: 1  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAK 60
          M DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA GR   +PAK
Sbjct: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRNAPDPAK 60

Query: 61 APP 64
           PP
Sbjct: 61 TPP 63

[Close]

BLAST of Cp4.1LG02g00550 vs. TrEMBL
Match: A0A067F7I0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034970mg PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.6e-22
Identity = 53/66 (80.30%), Postives = 57/66 (86.36%), Query Frame = 1


Query: 1  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAK 60
          M+DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKPDSPGKVD   R G +PAK
Sbjct: 1  MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPDSPGKVDPPIRHGVDPAK 60

Query: 61 APPVRY 67
            P ++
Sbjct: 61 PQPRKW 66

[Close]

BLAST of Cp4.1LG02g00550 vs. TrEMBL
Match: V4UTF7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010079mg PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.6e-22
Identity = 53/66 (80.30%), Postives = 57/66 (86.36%), Query Frame = 1


Query: 1  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAK 60
          M+DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKPDSPGKVD   R G +PAK
Sbjct: 1  MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPDSPGKVDPPIRHGVDPAK 60

Query: 61 APPVRY 67
            P ++
Sbjct: 61 PQPRKW 66

[Close]

BLAST of Cp4.1LG02g00550 vs. TrEMBL
Match: A0A0D2U289_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G451800 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 7.9e-22
Identity = 50/58 (86.21%), Postives = 54/58 (93.10%), Query Frame = 1


Query: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAK 61
          DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP+SP K DA G+PGA+P+K
Sbjct: 4  DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPESPAKADAHGKPGADPSK 61

[Close]

BLAST of Cp4.1LG02g00550 vs. TrEMBL
Match: A0A0D2V2G6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G451800 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 7.9e-22
Identity = 50/58 (86.21%), Postives = 54/58 (93.10%), Query Frame = 1


Query: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAK 61
          DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP+SP K DA G+PGA+P+K
Sbjct: 4  DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPESPAKADAHGKPGADPSK 61

[Close]

BLAST of Cp4.1LG02g00550 vs. TAIR10
Match: AT5G55850.2 (AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 96.3 bits (238), Expect = 7.8e-21
Identity = 49/66 (74.24%), Postives = 54/66 (81.82%), Query Frame = 1


Query: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGR---PGANPA 62
          DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPGK  ++G     G +P+
Sbjct: 19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGK-SSEGHVKSGGGDPS 78

Query: 63 KAPPVR 66
          K  PV+
Sbjct: 79 KPQPVK 83

[Close]

BLAST of Cp4.1LG02g00550 vs. TAIR10
Match: AT2G04410.1 (AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 92.8 bits (229), Expect = 8.6e-20
Identity = 46/57 (80.70%), Postives = 48/57 (84.21%), Query Frame = 1


Query: 1  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGAN 58
          MADKGRPLPKFGEWDVNDP+SAEGFTVIFNKAR+EKK GGK DSPGK      PG N
Sbjct: 1  MADKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDSPGK----DEPGYN 53

[Close]

BLAST of Cp4.1LG02g00550 vs. TAIR10
Match: AT5G63270.1 (AT5G63270.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 69.3 bits (168), Expect = 1.0e-12
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 1


Query: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKT----GGKPDS 45
          +KG+PLPKFGEWDVN+P SAEGFTVIF+KA DEKKT    G  P+S
Sbjct: 4  NKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNS 49

[Close]

BLAST of Cp4.1LG02g00550 vs. TAIR10
Match: AT5G40645.1 (AT5G40645.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 67.8 bits (164), Expect = 3.0e-12
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 1


Query: 6  RPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGR 54
          RPLPKFGEWDVNDP SAEGFTVIF KARD+KKT    ++ G+  +Q R
Sbjct: 13 RPLPKFGEWDVNDPASAEGFTVIFAKARDDKKT----NASGRAASQRR 56

[Close]

BLAST of Cp4.1LG02g00550 vs. TAIR10
Match: AT3G48450.1 (AT3G48450.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-11
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 1


Query: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKT 39
          ++ RPLPKFGEWD  +P SAEGFTVIFNKARD+KKT
Sbjct: 5  NRARPLPKFGEWDATNPGSAEGFTVIFNKARDDKKT 40

[Close]

BLAST of Cp4.1LG02g00550 vs. NCBI nr
Match: gi|659126106|ref|XP_008463014.1| (PREDICTED: RPM1-interacting protein 4-like isoform X1 [Cucumis melo])

HSP 1 Score: 127.9 bits (320), Expect = 6.9e-27
Identity = 60/66 (90.91%), Postives = 61/66 (92.42%), Query Frame = 1


Query: 1  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAK 60
          M DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA GR   +PAK
Sbjct: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRTAPDPAK 60

Query: 61 APPVRY 67
          APPVRY
Sbjct: 61 APPVRY 66

[Close]

BLAST of Cp4.1LG02g00550 vs. NCBI nr
Match: gi|659126108|ref|XP_008463015.1| (PREDICTED: RPM1-interacting protein 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 122.5 bits (306), Expect = 2.9e-25
Identity = 57/66 (86.36%), Postives = 60/66 (90.91%), Query Frame = 1


Query: 1  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAK 60
          M DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA GR   +PAK
Sbjct: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRTAPDPAK 60

Query: 61 APPVRY 67
          APP ++
Sbjct: 61 APPKKW 66

[Close]

BLAST of Cp4.1LG02g00550 vs. NCBI nr
Match: gi|449462389|ref|XP_004148923.1| (PREDICTED: RPM1-interacting protein 4-like [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-24
Identity = 56/66 (84.85%), Postives = 59/66 (89.39%), Query Frame = 1


Query: 1  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAK 60
          M DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA GR   +PAK
Sbjct: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRNAPDPAK 60

Query: 61 APPVRY 67
           PP ++
Sbjct: 61 TPPKKW 66

[Close]

BLAST of Cp4.1LG02g00550 vs. NCBI nr
Match: gi|700188804|gb|KGN44037.1| (hypothetical protein Csa_7G127370 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 3.2e-24
Identity = 56/63 (88.89%), Postives = 57/63 (90.48%), Query Frame = 1


Query: 1  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAK 60
          M DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA GR   +PAK
Sbjct: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRNAPDPAK 60

Query: 61 APP 64
           PP
Sbjct: 61 TPP 63

[Close]

BLAST of Cp4.1LG02g00550 vs. NCBI nr
Match: gi|568841856|ref|XP_006474872.1| (PREDICTED: uncharacterized protein LOC102627443 [Citrus sinensis])

HSP 1 Score: 112.1 bits (279), Expect = 3.9e-22
Identity = 53/66 (80.30%), Postives = 57/66 (86.36%), Query Frame = 1


Query: 1  MADKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAK 60
          M+DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKPDSPGKVD   R G +PAK
Sbjct: 1  MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPDSPGKVDPPIRQGVDPAK 60

Query: 61 APPVRY 67
            P ++
Sbjct: 61 PQPRKW 66

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g00550 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RIN4_ARATH	5.1e-06	54.05	RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1	[more]

BLAST of Cp4.1LG02g00550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6Y6_CUCSA	2.2e-24	88.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G127370 PE=4 SV=1	[more]
A0A067F7I0_CITSI	3.6e-22	80.30	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034970mg PE=4 SV=1	[more]
V4UTF7_9ROSI	3.6e-22	80.30	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010079mg PE=4 SV=1	[more]
A0A0D2U289_GOSRA	7.9e-22	86.21	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G451800 PE=4 SV=1	[more]
A0A0D2V2G6_GOSRA	7.9e-22	86.21	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G451800 PE=4 SV=1	[more]

BLAST of Cp4.1LG02g00550 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G55850.2	7.8e-21	74.24	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT2G04410.1	8.6e-20	80.70	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G63270.1	1.0e-12	71.74	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G40645.1	3.0e-12	68.75	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT3G48450.1	1.1e-11	77.78	RPM1-interacting protein 4 (RIN4) family protein	[more]

BLAST of Cp4.1LG02g00550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126106\|ref\|XP_008463014.1\|	6.9e-27	90.91	PREDICTED: RPM1-interacting protein 4-like isoform X1 [Cucumis melo]	[more]
gi\|659126108\|ref\|XP_008463015.1\|	2.9e-25	86.36	PREDICTED: RPM1-interacting protein 4-like isoform X2 [Cucumis melo]	[more]
gi\|449462389\|ref\|XP_004148923.1\|	1.1e-24	84.85	PREDICTED: RPM1-interacting protein 4-like [Cucumis sativus]	[more]
gi\|700188804\|gb\|KGN44037.1\|	3.2e-24	88.89	hypothetical protein Csa_7G127370 [Cucumis sativus]	[more]
gi\|568841856\|ref\|XP_006474872.1\|	3.9e-22	80.30	PREDICTED: uncharacterized protein LOC102627443 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008700	TypeIII_avirulence_cleave

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006810	transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g00550.1	Cp4.1LG02g00550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 3..38 score: 3.3
None	No IPR available	PANTHER	PTHR33159	FAMILY NOT NAMED	coord: 1..65 score: 5.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG02g00550	CmaCh09G010160	Cucurbita maxima (Rimu)	cmacpeB046
Cp4.1LG02g00550	CmoCh09G010190	Cucurbita moschata (Rifu)	cmocpeB021
Cp4.1LG02g00550	CmoCh01G011130	Cucurbita moschata (Rifu)	cmocpeB448
Cp4.1LG02g00550	Cla003318	Watermelon (97103) v1	cpewmB531
Cp4.1LG02g00550	Csa7G127370	Cucumber (Chinese Long) v2	cpecuB586
Cp4.1LG02g00550	MELO3C024949	Melon (DHL92) v3.5.1	cpemeB498
Cp4.1LG02g00550	ClCG09G021410	Watermelon (Charleston Gray)	cpewcgB478
Cp4.1LG02g00550	CSPI07G08380	Wild cucumber (PI 183967)	cpecpiB590
Cp4.1LG02g00550	Lsi02G018190	Bottle gourd (USVL1VR-Ls)	cpelsiB445
Cp4.1LG02g00550	MELO3C024949.2	Melon (DHL92) v3.6.1	cpemedB595
Cp4.1LG02g00550	CsaV3_7G011460	Cucumber (Chinese Long) v3	cpecucB0729
Cp4.1LG02g00550	Bhi09G001488	Wax gourd	cpewgoB0714
Cp4.1LG02g00550	CsGy7G007880	Cucumber (Gy14) v2	cgybcpeB948
Cp4.1LG02g00550	Carg12880	Silver-seed gourd	carcpeB1254
Cp4.1LG02g00550	Carg22417	Silver-seed gourd	carcpeB1232

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG02g00550	Cp4.1LG14g07800	Cucurbita pepo (Zucchini)	cpecpeB240
Cp4.1LG02g00550	Cp4.1LG06g08430	Cucurbita pepo (Zucchini)	cpecpeB460

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG02g00550	Cucurbita maxima (Rimu)	cmacpeB490
Cp4.1LG02g00550	Cucumber (Gy14) v2	cgybcpeB951