CSPI07G08380 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G08380
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	RPM1-interacting 4-like protein
Location	Chr7 : 6163632 .. 6165832 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAATTTCTTAAGAGGATTTTGGTATCCAATAAGCCCACATTTAGCCCATTTTACAAAAGTCGTCTTTCTTTCTCTCTTTCAATCTCCCACTCTTATTTTTCTCTCATTTCATTCATTTGAAATTCCATTTTTTTTTTCCTCCGAAACCTTCTCTCTCTAGAATTCATGACGGTATGCTTTCTCTTTCATTTCTGCCTCTTCAACATATTATTACAATTTTTATTTTTTCTTCTTCGCTTTCTTGCTTTGATGTGTTTTTTCGATCGGTTTCATTATTACTTCCTTCTCAATTTCCCTTTTCTTGATTCCTTCCCCCACTTTGATTTCCCTATTGATTCTTCATTTCTTTTGTTTCCCACTTTCATTTCTTTATTCCTCTTCCTGGGATTCAAGTTTATCGATTGATAGATTCTATGCTTGTTCTATTGGACCCCCATAAATCTGGATTTTCTACCAGATTTATTTAGTTGTTGGAGCTCGTTTTTCAATCAATAAATCTCTCACCTGCATTTAAATACGGATTTAACTAGTGTTGGATTGGAGGAAAAAACCTCTTGATTGTTTTATTTTGTTTGATTGATTAGTATCGGTTTTGGAGGTATTTACAAAATCTGTTGCTATAAAGCACGTTGTGTGGTAATAGATGATGGTTTTTAGATGGTAGATTCTTTGTCCGATTAGTAAGGTAACGCATAAGATTCACAGAGGGTACATCTTGTTTATTTATTACTTTTTTTCCCCCTCTTCTTGTAGGACAAAGGTCGGCCATTGCCAAAATTTGGTGAGTGGGATGTTAATGATCCGACATCGGCTGAGGGTTTCACTGTGATTTTCAACAAAGCTAGAGATGAGAAGAAAACAGGCGGCAAACCTGATTCACCTGGAAAAGTTGATGCACATGGCAGGAATGCACCAGATCCTGCCAAGACACCTCCTGTAAGATACATTCATAATCTTTTTCCTACTTGGGCGTTGGATGGTTGTTGTAGCTATATTGCATTCTATCTCTGTTGATAATAATTAATAAAGTAGTTGGCATCTAAACAATGCTTCTTCTATACCTCTGGACAATTGTTTGGTCTGTTACTGTCAATGAATTTCTGAGAGTGTTGATTCTCAGTTCTGACAGTATATTTATTGTATTCCAACCAATAGTTGCAAGCTTTTAGATGTTAAACACATGAAAAAAGGAACAAACAACCTTCAAAATCTATAATTTTAAGAAAAGAAAAGAAATATCACGGTAACGAGATATAGTCAGTATAAAAGGGTTTAATAGTCAGGGAAGTTGCCATCTTGCCCTTATCTGTTCTAAAGAATGCTACTTGTGTTCCTTTGGGCAATTGGTTTTGTCTGTTGCTTGCTTCTGATAGTGTGATGTGAGTGTGTATAGTAAGTATAATTCTGTTGAGCTTTGTTCAAAATCTTGGAAAGTATGAAACTGAAACATGTTGATAAAGTATCTAGAATTTAGTTAGAAGGAGAGACGATATCACATCATTTAATGTATTAACATCAGAATGTCTTTCAGTTTATATGCCTTGTTAGGAACTTTAAGTTATGAAACATAAATTTTCTAGTTTTGTTCATCTTTGAGAGGGCTATGATTCTTCTTGCATAAATGTCGGCCTTTGAAATAAATGGTTTGATCCCGGTGCTGCATTTACCCCTTTTCTTTACTGTATATATTGTATTTACAAGTTTTCTTTGGGTTTTCTTCTTTCATGTGGATGAATATCAGAAGAAATGGCTTTGCTGTATTCAAAGTCCCACTGCTGAATCTTAAGAAGGTTCGTTTAGAAGCTACAGTTGAAAAACTTCATATTATTCTGTAATTGTGCCTGCTGTTGGCTTCTCAAATACAGTGAACTTTTCATGGAGCCTTGATGGTCCTGCTAAATTTTATGCAATTTCATGTAAATCTGAGTGTTGTCTTGTTGTTGTGGAGGAAAAAAAAAGTAAAGAAGAACATGTATTGTATTTATATTATTGATATGGTGGTTTTTTATTAGGGGATAAAGTTGCTATTCTGTCTTTGCCTTTGGTGTGTGAGCTGTAAAGCTTTGCACTGGACATCATGTATAATTGTGGCTGGTATAATTAATGTAATACAACTTTTGCTTTTCTTTCAAACATACCCTTTTCCCATAATACTAAATATTTATTTGACAAAGAAGATTTTAATCTACAAGACCCACCA

mRNA sequence

ATGACGGACAAAGGTCGGCCATTGCCAAAATTTGGTGAGTGGGATGTTAATGATCCGACATCGGCTGAGGGTTTCACTGTGATTTTCAACAAAGCTAGAGATGAGAAGAAAACAGGCGGCAAACCTGATTCACCTGGAAAAGTTGATGCACATGGCAGGAATGCACCAGATCCTGCCAAGACACCTCCTAAGAAATGGCTTTGCTGTATTCAAAGTCCCACTGCTGAATCTTAA

Coding sequence (CDS)

ATGACGGACAAAGGTCGGCCATTGCCAAAATTTGGTGAGTGGGATGTTAATGATCCGACATCGGCTGAGGGTTTCACTGTGATTTTCAACAAAGCTAGAGATGAGAAGAAAACAGGCGGCAAACCTGATTCACCTGGAAAAGTTGATGCACATGGCAGGAATGCACCAGATCCTGCCAAGACACCTCCTAAGAAATGGCTTTGCTGTATTCAAAGTCCCACTGCTGAATCTTAA

Homology

[Close]

BLAST of CSPI07G08380 vs. Swiss-Prot
Match: RIN4_ARATH (RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.5e-06
Identity = 24/67 (35.82%), Postives = 37/67 (55.22%), Query Frame = 1


Query: 3   DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRNAPDPAKTP 62
           +K   +PKFG+WD N+P+SA+G+T IFNK R+E+ +G       +   H       ++ P
Sbjct: 143 EKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGSSRTPTH-----QSSRNP 202

Query: 63  PKKWLCC 70
                CC
Sbjct: 203 NNTSSCC 204

[Close]

BLAST of CSPI07G08380 vs. TrEMBL
Match: A0A0A0K6Y6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G127370 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.4e-30
Identity = 65/77 (84.42%), Postives = 66/77 (85.71%), Query Frame = 1


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRNAPDPAK 60
          MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRNAPDPAK
Sbjct: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRNAPDPAK 60

Query: 61 TPPK-------KWLCCI 71
          TPP         W C +
Sbjct: 61 TPPNATCVPLGNWFCLL 77

[Close]

BLAST of CSPI07G08380 vs. TrEMBL
Match: V4UTF7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010079mg PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 4.1e-30
Identity = 63/77 (81.82%), Postives = 68/77 (88.31%), Query Frame = 1


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRNAPDPAK 60
          M+DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKPDSPGKVD   R+  DPAK
Sbjct: 1  MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPDSPGKVDPPIRHGVDPAK 60

Query: 61 TPPKKWLCCIQSPTAES 78
            P+KW CCIQSP+A+S
Sbjct: 61 PQPRKWFCCIQSPSAQS 77

[Close]

BLAST of CSPI07G08380 vs. TrEMBL
Match: A0A067F7I0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034970mg PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 4.1e-30
Identity = 63/77 (81.82%), Postives = 68/77 (88.31%), Query Frame = 1


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRNAPDPAK 60
          M+DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKPDSPGKVD   R+  DPAK
Sbjct: 1  MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPDSPGKVDPPIRHGVDPAK 60

Query: 61 TPPKKWLCCIQSPTAES 78
            P+KW CCIQSP+A+S
Sbjct: 61 PQPRKWFCCIQSPSAQS 77

[Close]

BLAST of CSPI07G08380 vs. TrEMBL
Match: A0A0B0PEC9_GOSAR (RPM1-interacting 4-like protein OS=Gossypium arboreum GN=F383_07102 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.0e-29
Identity = 60/75 (80.00%), Postives = 65/75 (86.67%), Query Frame = 1


Query: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRNAPDPAKTP 62
          DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP+SP K DAH +  PDP+K  
Sbjct: 4  DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPESPAKADAHSKPGPDPSKPQ 63

Query: 63 PKKWLCCIQSPTAES 78
           KKWLCC+Q+P AES
Sbjct: 64 SKKWLCCVQAPPAES 78

[Close]

BLAST of CSPI07G08380 vs. TrEMBL
Match: A0A0D2U289_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G451800 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.4e-29
Identity = 60/75 (80.00%), Postives = 65/75 (86.67%), Query Frame = 1


Query: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRNAPDPAKTP 62
          DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP+SP K DAHG+   DP+K  
Sbjct: 4  DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPESPAKADAHGKPGADPSKPQ 63

Query: 63 PKKWLCCIQSPTAES 78
           KKWLCC+Q+P AES
Sbjct: 64 SKKWLCCVQAPPAES 78

[Close]

BLAST of CSPI07G08380 vs. TAIR10
Match: AT2G04410.1 (AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 107.1 bits (266), Expect = 5.1e-24
Identity = 49/72 (68.06%), Postives = 56/72 (77.78%), Query Frame = 1


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRNAPDPAK 60
          M DKGRPLPKFGEWDVNDP+SAEGFTVIFNKAR+EKK GGK DSPGK +       +  +
Sbjct: 1  MADKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDSPGKDEPGYNKNGEVLE 60

Query: 61 TPPKKWLCCIQS 73
           P KKW CCI++
Sbjct: 61 KPAKKWFCCIRA 72

[Close]

BLAST of CSPI07G08380 vs. TAIR10
Match: AT5G55850.2 (AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 98.2 bits (243), Expect = 2.4e-21
Identity = 49/75 (65.33%), Postives = 58/75 (77.33%), Query Frame = 1


Query: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGK-VDAHGRN-APDPAK 62
          DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPGK  + H ++   DP+K
Sbjct: 19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDPSK 78

Query: 63 TPPKKWLCCIQSPTA 76
            P K +  + + ++
Sbjct: 79 PQPVKKMALLHASSS 93

[Close]

BLAST of CSPI07G08380 vs. TAIR10
Match: AT5G40645.1 (AT5G40645.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 73.9 bits (180), Expect = 4.8e-14
Identity = 37/64 (57.81%), Postives = 43/64 (67.19%), Query Frame = 1


Query: 6  RPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRNAPDPAKTPPKK 65
          RPLPKFGEWDVNDP SAEGFTVIF KARD+KKT    ++ G+  +  R+       P KK
Sbjct: 13 RPLPKFGEWDVNDPASAEGFTVIFAKARDDKKT----NASGRAASQRRDNNKSQDEPTKK 72

Query: 66 WLCC 70
            CC
Sbjct: 73 RFCC 72

[Close]

BLAST of CSPI07G08380 vs. TAIR10
Match: AT4G35655.1 (AT4G35655.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 71.6 bits (174), Expect = 2.4e-13
Identity = 37/63 (58.73%), Postives = 42/63 (66.67%), Query Frame = 1


Query: 6  RPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRNAPDPAKTPPKK 65
          RPLPKFGEWDVNDP +AEGFTVIF+KA ++KKTG          A  +   D  K P KK
Sbjct: 8  RPLPKFGEWDVNDPATAEGFTVIFSKAGEDKKTGRSSSK-----APSQRKQDGVK-PTKK 64

Query: 66 WLC 69
          WLC
Sbjct: 68 WLC 64

[Close]

BLAST of CSPI07G08380 vs. TAIR10
Match: AT5G63270.1 (AT5G63270.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 70.1 bits (170), Expect = 6.9e-13
Identity = 39/75 (52.00%), Postives = 48/75 (64.00%), Query Frame = 1


Query: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKT----GGKPD---SPGKVDAHGRNA 62
          +KG+PLPKFGEWDVN+P SAEGFTVIF+KA DEKKT    G  P+   SP +     +N 
Sbjct: 4  NKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNSLVSPQRNQNSDQNN 63

Query: 63 PDPAKTP--PKKWLC 69
             ++ P    KW C
Sbjct: 64 NHSSQNPKAKNKWFC 78

[Close]

BLAST of CSPI07G08380 vs. NCBI nr
Match: gi|449462389|ref|XP_004148923.1| (PREDICTED: RPM1-interacting protein 4-like [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 3.1e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRNAPDPAK 60
          MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRNAPDPAK
Sbjct: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRNAPDPAK 60

Query: 61 TPPKKWLCCIQSPTAES 78
          TPPKKWLCCIQSPTAES
Sbjct: 61 TPPKKWLCCIQSPTAES 77

[Close]

BLAST of CSPI07G08380 vs. NCBI nr
Match: gi|659126108|ref|XP_008463015.1| (PREDICTED: RPM1-interacting protein 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 164.9 bits (416), Expect = 5.8e-38
Identity = 75/77 (97.40%), Postives = 75/77 (97.40%), Query Frame = 1


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRNAPDPAK 60
          MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGR APDPAK
Sbjct: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRTAPDPAK 60

Query: 61 TPPKKWLCCIQSPTAES 78
           PPKKWLCCIQSPTAES
Sbjct: 61 APPKKWLCCIQSPTAES 77

[Close]

BLAST of CSPI07G08380 vs. NCBI nr
Match: gi|700188804|gb|KGN44037.1| (hypothetical protein Csa_7G127370 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 3.4e-30
Identity = 65/77 (84.42%), Postives = 66/77 (85.71%), Query Frame = 1


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRNAPDPAK 60
          MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRNAPDPAK
Sbjct: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRNAPDPAK 60

Query: 61 TPPK-------KWLCCI 71
          TPP         W C +
Sbjct: 61 TPPNATCVPLGNWFCLL 77

[Close]

BLAST of CSPI07G08380 vs. NCBI nr
Match: gi|567921210|ref|XP_006452611.1| (hypothetical protein CICLE_v10010079mg [Citrus clementina])

HSP 1 Score: 138.3 bits (347), Expect = 5.8e-30
Identity = 63/77 (81.82%), Postives = 68/77 (88.31%), Query Frame = 1


Query: 1  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRNAPDPAK 60
          M+DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKPDSPGKVD   R+  DPAK
Sbjct: 1  MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPDSPGKVDPPIRHGVDPAK 60

Query: 61 TPPKKWLCCIQSPTAES 78
            P+KW CCIQSP+A+S
Sbjct: 61 PQPRKWFCCIQSPSAQS 77

[Close]

BLAST of CSPI07G08380 vs. NCBI nr
Match: gi|728845345|gb|KHG24788.1| (RPM1-interacting 4 -like protein [Gossypium arboreum])

HSP 1 Score: 136.0 bits (341), Expect = 2.9e-29
Identity = 60/75 (80.00%), Postives = 65/75 (86.67%), Query Frame = 1


Query: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRNAPDPAKTP 62
          DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP+SP K DAH +  PDP+K  
Sbjct: 4  DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPESPAKADAHSKPGPDPSKPQ 63

Query: 63 PKKWLCCIQSPTAES 78
           KKWLCC+Q+P AES
Sbjct: 64 SKKWLCCVQAPPAES 78

The following BLAST results are available for this feature:

BLAST of CSPI07G08380 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RIN4_ARATH	1.5e-06	35.82	RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1	[more]

BLAST of CSPI07G08380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6Y6_CUCSA	2.4e-30	84.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G127370 PE=4 SV=1	[more]
V4UTF7_9ROSI	4.1e-30	81.82	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010079mg PE=4 SV=1	[more]
A0A067F7I0_CITSI	4.1e-30	81.82	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034970mg PE=4 SV=1	[more]
A0A0B0PEC9_GOSAR	2.0e-29	80.00	RPM1-interacting 4-like protein OS=Gossypium arboreum GN=F383_07102 PE=4 SV=1	[more]
A0A0D2U289_GOSRA	3.4e-29	80.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G451800 PE=4 SV=1	[more]

BLAST of CSPI07G08380 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G04410.1	5.1e-24	68.06	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.2	2.4e-21	65.33	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G40645.1	4.8e-14	57.81	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT4G35655.1	2.4e-13	58.73	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G63270.1	6.9e-13	52.00	RPM1-interacting protein 4 (RIN4) family protein	[more]

BLAST of CSPI07G08380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462389\|ref\|XP_004148923.1\|	3.1e-39	100.00	PREDICTED: RPM1-interacting protein 4-like [Cucumis sativus]	[more]
gi\|659126108\|ref\|XP_008463015.1\|	5.8e-38	97.40	PREDICTED: RPM1-interacting protein 4-like isoform X2 [Cucumis melo]	[more]
gi\|700188804\|gb\|KGN44037.1\|	3.4e-30	84.42	hypothetical protein Csa_7G127370 [Cucumis sativus]	[more]
gi\|567921210\|ref\|XP_006452611.1\|	5.8e-30	81.82	hypothetical protein CICLE_v10010079mg [Citrus clementina]	[more]
gi\|728845345\|gb\|KHG24788.1\|	2.9e-29	80.00	RPM1-interacting 4 -like protein [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008700	TypeIII_avirulence_cleave

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006810	transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G08380.1	CSPI07G08380.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 3..38 score: 4.7
None	No IPR available	PANTHER	PTHR33159	FAMILY NOT NAMED	coord: 1..77 score: 8.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G08380	Cla003318	Watermelon (97103) v1	cpiwmB579
CSPI07G08380	Csa7G127370	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G08380	MELO3C024949	Melon (DHL92) v3.5.1	cpimeB530
CSPI07G08380	ClCG09G021410	Watermelon (Charleston Gray)	cpiwcgB548
CSPI07G08380	Lsi02G018190	Bottle gourd (USVL1VR-Ls)	cpilsiB526
CSPI07G08380	MELO3C024949.2	Melon (DHL92) v3.6.1	cpimedB533
CSPI07G08380	CsaV3_7G011460	Cucumber (Chinese Long) v3	cpicucB415
CSPI07G08380	Cla97C09G182810	Watermelon (97103) v2	cpiwmbB591
CSPI07G08380	Bhi09G001488	Wax gourd	cpiwgoB709
CSPI07G08380	Cucsa.247830	Cucumber (Gy14) v1	cgycpiB370
CSPI07G08380	CmaCh09G010160	Cucurbita maxima (Rimu)	cmacpiB041
CSPI07G08380	CmoCh09G010190	Cucurbita moschata (Rifu)	cmocpiB031
CSPI07G08380	CmoCh01G011130	Cucurbita moschata (Rifu)	cmocpiB495
CSPI07G08380	Cp4.1LG06g08430	Cucurbita pepo (Zucchini)	cpecpiB798
CSPI07G08380	Cp4.1LG02g00550	Cucurbita pepo (Zucchini)	cpecpiB590
CSPI07G08380	CsGy7G007880	Cucumber (Gy14) v2	cgybcpiB332
CSPI07G08380	Carg12880	Silver-seed gourd	carcpiB0944
CSPI07G08380	Carg22417	Silver-seed gourd	carcpiB0918

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G08380	Cucurbita maxima (Rimu)	cmacpiB504