Lsi05G014570 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi05G014570
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionRING zinc finger protein, putative
Locationchr05 : 22434028 .. 22434456 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAGGGTTTGGCGTTTTCCCTCTCGGTAGTTGCTTCGATGGATGCCGTGACCACGCTCAAGCGTCGGGATTCGGCACCCGAATATGGAACTTGAGCGACAGGCCGGTGGAGCTGCAGATAAGGGTGGGATCAATATTGAAAAAAGTGCATAGTTTGAAGCCAGGATGTTCAAAGAGGTTGAAATGTAAGAGCATTTACAAAGCATACATGCCAGGAAGAAGTATGAAGAGCTTGCTTTATTACTATGATGAAGCTTGCCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAGCAGCAATACATTAGTCTTGAAGACCTAAGGGAGTTTTCTGAGATCAGAATCTTTAGGGATCATCAACGCGGCTGCGTATCGGTTCGAAAGAAACCGAGGCCCGATTTTTGCTGA

mRNA sequence

ATGCCAGGGTTTGGCGTTTTCCCTCTCGGTAGTTGCTTCGATGGATGCCGTGACCACGCTCAAGCGTCGGGATTCGGCACCCGAATATGGAACTTGAGCGACAGGCCGGTGGAGCTGCAGATAAGGGTGGGATCAATATTGAAAAAAGTGCATAGTTTGAAGCCAGGATGTTCAAAGAGGTTGAAATGTAAGAGCATTTACAAAGCATACATGCCAGGAAGAAGTATGAAGAGCTTGCTTTATTACTATGATGAAGCTTGCCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAGCAGCAATACATTAGTCTTGAAGACCTAAGGGAGTTTTCTGAGATCAGAATCTTTAGGGATCATCAACGCGGCTGCGTATCGGTTCGAAAGAAACCGAGGCCCGATTTTTGCTGA

Coding sequence (CDS)

ATGCCAGGGTTTGGCGTTTTCCCTCTCGGTAGTTGCTTCGATGGATGCCGTGACCACGCTCAAGCGTCGGGATTCGGCACCCGAATATGGAACTTGAGCGACAGGCCGGTGGAGCTGCAGATAAGGGTGGGATCAATATTGAAAAAAGTGCATAGTTTGAAGCCAGGATGTTCAAAGAGGTTGAAATGTAAGAGCATTTACAAAGCATACATGCCAGGAAGAAGTATGAAGAGCTTGCTTTATTACTATGATGAAGCTTGCCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAGCAGCAATACATTAGTCTTGAAGACCTAAGGGAGTTTTCTGAGATCAGAATCTTTAGGGATCATCAACGCGGCTGCGTATCGGTTCGAAAGAAACCGAGGCCCGATTTTTGCTGA

Protein sequence

MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKRLKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEIRIFRDHQRGCVSVRKKPRPDFC
BLAST of Lsi05G014570 vs. TrEMBL
Match: A0A0A0L8V0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G150060 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 3.9e-79
Identity = 139/142 (97.89%), Postives = 141/142 (99.30%), Query Frame = 1

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQY+SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
           RIFRDHQRGC+SVRKK RPDFC
Sbjct: 121 RIFRDHQRGCISVRKKQRPDFC 142

BLAST of Lsi05G014570 vs. TrEMBL
Match: A0A061ET99_THECC (EF-hand calcium-binding domain-containing protein 4A OS=Theobroma cacao GN=TCM_020511 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 1.6e-69
Identity = 123/148 (83.11%), Postives = 132/148 (89.19%), Query Frame = 1

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPG G+FP G CFDGCRDH QASGFGTRIWNLSDR VELQ+RVGSILKKVH+LKPG SKR
Sbjct: 20  MPGLGIFPFGGCFDGCRDHTQASGFGTRIWNLSDRAVELQVRVGSILKKVHTLKPGSSKR 79

Query: 61  LKCKSIYKAYMPGRS------MKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDL 120
           LKCKSIYKAYMPGRS      MKSLLYYYDE C PY+W+H++GGDS RMVKQQYISLEDL
Sbjct: 80  LKCKSIYKAYMPGRSGNGSGGMKSLLYYYDETCHPYIWVHDTGGDSSRMVKQQYISLEDL 139

Query: 121 REFSEIRIFRDHQRGCVSVRKKPRPDFC 143
           R+ SEIRIFRDHQRGC+SVRKKPRPDFC
Sbjct: 140 RDCSEIRIFRDHQRGCISVRKKPRPDFC 167

BLAST of Lsi05G014570 vs. TrEMBL
Match: A0A067G869_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040596mg PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 6.8e-68
Identity = 118/150 (78.67%), Postives = 133/150 (88.67%), Query Frame = 1

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           +PGFG+FP G CFDGCRDH QASGFGTRIWNLSDRPVELQ+RVGSILKKVH+LKPG SKR
Sbjct: 20  IPGFGIFPFGGCFDGCRDHTQASGFGTRIWNLSDRPVELQVRVGSILKKVHTLKPGSSKR 79

Query: 61  LKCKSIYKAYMPGRS--------MKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLE 120
           LKCKSIYKAYMPGR+        MKSLLYYYDE C PY+WIH++G D++RMVKQQY+SL+
Sbjct: 80  LKCKSIYKAYMPGRNGNNSTNGGMKSLLYYYDETCHPYIWIHDTGSDTLRMVKQQYLSLD 139

Query: 121 DLREFSEIRIFRDHQRGCVSVRKKPRPDFC 143
           DLR+ SEIR+FRDHQRGC+SVRKK RPDFC
Sbjct: 140 DLRDCSEIRVFRDHQRGCISVRKKSRPDFC 169

BLAST of Lsi05G014570 vs. TrEMBL
Match: V4S820_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006064mg PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 6.8e-68
Identity = 118/150 (78.67%), Postives = 133/150 (88.67%), Query Frame = 1

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           +PGFG+FP G CFDGCRDH QASGFGTRIWNLSDRPVELQ+RVGSILKKVH+LKPG SKR
Sbjct: 20  IPGFGIFPFGGCFDGCRDHTQASGFGTRIWNLSDRPVELQVRVGSILKKVHTLKPGSSKR 79

Query: 61  LKCKSIYKAYMPGRS--------MKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLE 120
           LKCKSIYKAYMPGR+        MKSLLYYYDE C PY+WIH++G D++RMVKQQY+SL+
Sbjct: 80  LKCKSIYKAYMPGRNGNNSTNGGMKSLLYYYDETCHPYIWIHDTGSDTLRMVKQQYLSLD 139

Query: 121 DLREFSEIRIFRDHQRGCVSVRKKPRPDFC 143
           DLR+ SEIR+FRDHQRGC+SVRKK RPDFC
Sbjct: 140 DLRDCSEIRVFRDHQRGCISVRKKSRPDFC 169

BLAST of Lsi05G014570 vs. TrEMBL
Match: W9RWH9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010025 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 6.8e-68
Identity = 118/142 (83.10%), Postives = 130/142 (91.55%), Query Frame = 1

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MP FG+FP+G C DGCRDH Q SGFGTRIWNLSD+PVELQIRVGSILKKVH+LKPG SKR
Sbjct: 20  MPRFGIFPVGGCLDGCRDHTQGSGFGTRIWNLSDKPVELQIRVGSILKKVHTLKPGSSKR 79

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
           LKCKSIYKAYMPG + KSLLYYYDE C PYVWI+++GGDS+RMVKQQYISLEDLR+FSEI
Sbjct: 80  LKCKSIYKAYMPGENGKSLLYYYDETCHPYVWINDTGGDSLRMVKQQYISLEDLRDFSEI 139

Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
           R+FRDHQRGC+SVRKK RPD C
Sbjct: 140 RVFRDHQRGCISVRKKARPDVC 161

BLAST of Lsi05G014570 vs. TAIR10
Match: AT3G06145.1 (AT3G06145.1 unknown protein)

HSP 1 Score: 163.7 bits (413), Expect = 8.3e-41
Identity = 78/135 (57.78%), Postives = 101/135 (74.81%), Query Frame = 1

Query: 9   LGSCFDGCRDHAQA-----SGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKRLKC 68
           L  C+ GC D         +   TR WNLSDRPVELQIRVGSILK+VH+LKPG SK+L+ 
Sbjct: 28  LRQCYGGCGDRTHLLPCSIATTSTRFWNLSDRPVELQIRVGSILKRVHTLKPGRSKKLRH 87

Query: 69  KSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEIRIF 128
           +SI++AY+  +  +  LYY D+ C PYVW+HE+G D  +MVKQQY+SLEDLR++SEIR+F
Sbjct: 88  RSIHRAYVDDQEGRRWLYY-DDTCLPYVWVHETGTDLSKMVKQQYVSLEDLRDYSEIRVF 147

Query: 129 RDHQRGCVSVRKKPR 139
           +D QRGCV+V K+ R
Sbjct: 148 KDLQRGCVAVEKRDR 161

BLAST of Lsi05G014570 vs. NCBI nr
Match: gi|659076516|ref|XP_008438723.1| (PREDICTED: uncharacterized protein LOC103483746 [Cucumis melo])

HSP 1 Score: 304.7 bits (779), Expect = 8.6e-80
Identity = 139/142 (97.89%), Postives = 142/142 (100.00%), Query Frame = 1

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTR+WNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQY+SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
           RIFRDHQRGC+SVRKKPRPDFC
Sbjct: 121 RIFRDHQRGCISVRKKPRPDFC 142

BLAST of Lsi05G014570 vs. NCBI nr
Match: gi|778678588|ref|XP_011650993.1| (PREDICTED: uncharacterized protein LOC105434839 [Cucumis sativus])

HSP 1 Score: 302.0 bits (772), Expect = 5.6e-79
Identity = 139/142 (97.89%), Postives = 141/142 (99.30%), Query Frame = 1

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQY+SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
           RIFRDHQRGC+SVRKK RPDFC
Sbjct: 121 RIFRDHQRGCISVRKKQRPDFC 142

BLAST of Lsi05G014570 vs. NCBI nr
Match: gi|590657580|ref|XP_007034603.1| (EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao])

HSP 1 Score: 270.0 bits (689), Expect = 2.3e-69
Identity = 123/148 (83.11%), Postives = 132/148 (89.19%), Query Frame = 1

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPG G+FP G CFDGCRDH QASGFGTRIWNLSDR VELQ+RVGSILKKVH+LKPG SKR
Sbjct: 20  MPGLGIFPFGGCFDGCRDHTQASGFGTRIWNLSDRAVELQVRVGSILKKVHTLKPGSSKR 79

Query: 61  LKCKSIYKAYMPGRS------MKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDL 120
           LKCKSIYKAYMPGRS      MKSLLYYYDE C PY+W+H++GGDS RMVKQQYISLEDL
Sbjct: 80  LKCKSIYKAYMPGRSGNGSGGMKSLLYYYDETCHPYIWVHDTGGDSSRMVKQQYISLEDL 139

Query: 121 REFSEIRIFRDHQRGCVSVRKKPRPDFC 143
           R+ SEIRIFRDHQRGC+SVRKKPRPDFC
Sbjct: 140 RDCSEIRIFRDHQRGCISVRKKPRPDFC 167

BLAST of Lsi05G014570 vs. NCBI nr
Match: gi|703125908|ref|XP_010103425.1| (hypothetical protein L484_010025 [Morus notabilis])

HSP 1 Score: 264.6 bits (675), Expect = 9.8e-68
Identity = 118/142 (83.10%), Postives = 130/142 (91.55%), Query Frame = 1

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MP FG+FP+G C DGCRDH Q SGFGTRIWNLSD+PVELQIRVGSILKKVH+LKPG SKR
Sbjct: 20  MPRFGIFPVGGCLDGCRDHTQGSGFGTRIWNLSDKPVELQIRVGSILKKVHTLKPGSSKR 79

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
           LKCKSIYKAYMPG + KSLLYYYDE C PYVWI+++GGDS+RMVKQQYISLEDLR+FSEI
Sbjct: 80  LKCKSIYKAYMPGENGKSLLYYYDETCHPYVWINDTGGDSLRMVKQQYISLEDLRDFSEI 139

Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
           R+FRDHQRGC+SVRKK RPD C
Sbjct: 140 RVFRDHQRGCISVRKKARPDVC 161

BLAST of Lsi05G014570 vs. NCBI nr
Match: gi|567853305|ref|XP_006419816.1| (hypothetical protein CICLE_v10006064mg [Citrus clementina])

HSP 1 Score: 264.6 bits (675), Expect = 9.8e-68
Identity = 118/150 (78.67%), Postives = 133/150 (88.67%), Query Frame = 1

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           +PGFG+FP G CFDGCRDH QASGFGTRIWNLSDRPVELQ+RVGSILKKVH+LKPG SKR
Sbjct: 20  IPGFGIFPFGGCFDGCRDHTQASGFGTRIWNLSDRPVELQVRVGSILKKVHTLKPGSSKR 79

Query: 61  LKCKSIYKAYMPGRS--------MKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLE 120
           LKCKSIYKAYMPGR+        MKSLLYYYDE C PY+WIH++G D++RMVKQQY+SL+
Sbjct: 80  LKCKSIYKAYMPGRNGNNSTNGGMKSLLYYYDETCHPYIWIHDTGSDTLRMVKQQYLSLD 139

Query: 121 DLREFSEIRIFRDHQRGCVSVRKKPRPDFC 143
           DLR+ SEIR+FRDHQRGC+SVRKK RPDFC
Sbjct: 140 DLRDCSEIRVFRDHQRGCISVRKKSRPDFC 169

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L8V0_CUCSA3.9e-7997.89Uncharacterized protein OS=Cucumis sativus GN=Csa_3G150060 PE=4 SV=1[more]
A0A061ET99_THECC1.6e-6983.11EF-hand calcium-binding domain-containing protein 4A OS=Theobroma cacao GN=TCM_0... [more]
A0A067G869_CITSI6.8e-6878.67Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040596mg PE=4 SV=1[more]
V4S820_9ROSI6.8e-6878.67Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006064mg PE=4 SV=1[more]
W9RWH9_9ROSA6.8e-6883.10Uncharacterized protein OS=Morus notabilis GN=L484_010025 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G06145.18.3e-4157.78 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659076516|ref|XP_008438723.1|8.6e-8097.89PREDICTED: uncharacterized protein LOC103483746 [Cucumis melo][more]
gi|778678588|ref|XP_011650993.1|5.6e-7997.89PREDICTED: uncharacterized protein LOC105434839 [Cucumis sativus][more]
gi|590657580|ref|XP_007034603.1|2.3e-6983.11EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao][more]
gi|703125908|ref|XP_010103425.1|9.8e-6883.10hypothetical protein L484_010025 [Morus notabilis][more]
gi|567853305|ref|XP_006419816.1|9.8e-6878.67hypothetical protein CICLE_v10006064mg [Citrus clementina][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G014570.1Lsi05G014570.1mRNA


The following gene(s) are paralogous to this gene:

None