Cla021664 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021664
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr5 : 5090011 .. 5090439 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGGGGTTTGGCGTTTTCCCTCTCGGTAGCTGCTTCGATGGATGCCGAGACCACGCTCAAGCGTCAGGATTCGGCACTCGAATATGGAACTTGAGCGACAGGCCGGTGGAGCTGCAGATAAGGGTGGGATCAATATTGAAAAAAGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGTAAGAGCATTTACAAAGCATACATGCCAGGAAGGAGTATGAAGAGCTTGCTTTATTATTATGATGAAGCTTGCCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAGCAGCAATACATCAGTCTTGAAGATCTAAGGGAGTTTTCTGAGATCAGAATCTTTAGGGATCATCAACGTGGCTGTGTATCGGTGCGCAAGAAACCGAGGCCCGATTTTTGCTGA

mRNA sequence

ATGCCGGGGTTTGGCGTTTTCCCTCTCGGTAGCTGCTTCGATGGATGCCGAGACCACGCTCAAGCGTCAGGATTCGGCACTCGAATATGGAACTTGAGCGACAGGCCGGTGGAGCTGCAGATAAGGGTGGGATCAATATTGAAAAAAGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGTAAGAGCATTTACAAAGCATACATGCCAGGAAGGAGTATGAAGAGCTTGCTTTATTATTATGATGAAGCTTGCCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAGCAGCAATACATCAGTCTTGAAGATCTAAGGGAGTTTTCTGAGATCAGAATCTTTAGGGATCATCAACGTGGCTGTGTATCGGTGCGCAAGAAACCGAGGCCCGATTTTTGCTGA

Coding sequence (CDS)

ATGCCGGGGTTTGGCGTTTTCCCTCTCGGTAGCTGCTTCGATGGATGCCGAGACCACGCTCAAGCGTCAGGATTCGGCACTCGAATATGGAACTTGAGCGACAGGCCGGTGGAGCTGCAGATAAGGGTGGGATCAATATTGAAAAAAGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGTAAGAGCATTTACAAAGCATACATGCCAGGAAGGAGTATGAAGAGCTTGCTTTATTATTATGATGAAGCTTGCCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAGCAGCAATACATCAGTCTTGAAGATCTAAGGGAGTTTTCTGAGATCAGAATCTTTAGGGATCATCAACGTGGCTGTGTATCGGTGCGCAAGAAACCGAGGCCCGATTTTTGCTGA

Protein sequence

MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKRLKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEIRIFRDHQRGCVSVRKKPRPDFC

Homology

[Close]

BLAST of Cla021664 vs. TrEMBL
Match: A0A0A0L8V0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G150060 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 1.9e-78
Identity = 139/142 (97.89%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQY+SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
           RIFRDHQRGC+SVRKK RPDFC
Sbjct: 121 RIFRDHQRGCISVRKKQRPDFC 142

[Close]

BLAST of Cla021664 vs. TrEMBL
Match: A0A061ET99_THECC (EF-hand calcium-binding domain-containing protein 4A OS=Theobroma cacao GN=TCM_020511 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 8.1e-69
Identity = 123/148 (83.11%), Postives = 132/148 (89.19%), Query Frame = 1


Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPG G+FP G CFDGCRDH QASGFGTRIWNLSDR VELQ+RVGSILKKVH+LKPG SKR
Sbjct: 20  MPGLGIFPFGGCFDGCRDHTQASGFGTRIWNLSDRAVELQVRVGSILKKVHTLKPGSSKR 79

Query: 61  LKCKSIYKAYMPGRS------MKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDL 120
           LKCKSIYKAYMPGRS      MKSLLYYYDE C PY+W+H++GGDS RMVKQQYISLEDL
Sbjct: 80  LKCKSIYKAYMPGRSGNGSGGMKSLLYYYDETCHPYIWVHDTGGDSSRMVKQQYISLEDL 139

Query: 121 REFSEIRIFRDHQRGCVSVRKKPRPDFC 143
           R+ SEIRIFRDHQRGC+SVRKKPRPDFC
Sbjct: 140 RDCSEIRIFRDHQRGCISVRKKPRPDFC 167

[Close]

BLAST of Cla021664 vs. TrEMBL
Match: A0A067G869_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040596mg PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 3.4e-67
Identity = 118/150 (78.67%), Postives = 133/150 (88.67%), Query Frame = 1


Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           +PGFG+FP G CFDGCRDH QASGFGTRIWNLSDRPVELQ+RVGSILKKVH+LKPG SKR
Sbjct: 20  IPGFGIFPFGGCFDGCRDHTQASGFGTRIWNLSDRPVELQVRVGSILKKVHTLKPGSSKR 79

Query: 61  LKCKSIYKAYMPGRS--------MKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLE 120
           LKCKSIYKAYMPGR+        MKSLLYYYDE C PY+WIH++G D++RMVKQQY+SL+
Sbjct: 80  LKCKSIYKAYMPGRNGNNSTNGGMKSLLYYYDETCHPYIWIHDTGSDTLRMVKQQYLSLD 139

Query: 121 DLREFSEIRIFRDHQRGCVSVRKKPRPDFC 143
           DLR+ SEIR+FRDHQRGC+SVRKK RPDFC
Sbjct: 140 DLRDCSEIRVFRDHQRGCISVRKKSRPDFC 169

[Close]

BLAST of Cla021664 vs. TrEMBL
Match: V4S820_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006064mg PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 3.4e-67
Identity = 118/150 (78.67%), Postives = 133/150 (88.67%), Query Frame = 1


Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           +PGFG+FP G CFDGCRDH QASGFGTRIWNLSDRPVELQ+RVGSILKKVH+LKPG SKR
Sbjct: 20  IPGFGIFPFGGCFDGCRDHTQASGFGTRIWNLSDRPVELQVRVGSILKKVHTLKPGSSKR 79

Query: 61  LKCKSIYKAYMPGRS--------MKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLE 120
           LKCKSIYKAYMPGR+        MKSLLYYYDE C PY+WIH++G D++RMVKQQY+SL+
Sbjct: 80  LKCKSIYKAYMPGRNGNNSTNGGMKSLLYYYDETCHPYIWIHDTGSDTLRMVKQQYLSLD 139

Query: 121 DLREFSEIRIFRDHQRGCVSVRKKPRPDFC 143
           DLR+ SEIR+FRDHQRGC+SVRKK RPDFC
Sbjct: 140 DLRDCSEIRVFRDHQRGCISVRKKSRPDFC 169

[Close]

BLAST of Cla021664 vs. TrEMBL
Match: W9RWH9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010025 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 3.4e-67
Identity = 118/142 (83.10%), Postives = 130/142 (91.55%), Query Frame = 1


Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MP FG+FP+G C DGCRDH Q SGFGTRIWNLSD+PVELQIRVGSILKKVH+LKPG SKR
Sbjct: 20  MPRFGIFPVGGCLDGCRDHTQGSGFGTRIWNLSDKPVELQIRVGSILKKVHTLKPGSSKR 79

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
           LKCKSIYKAYMPG + KSLLYYYDE C PYVWI+++GGDS+RMVKQQYISLEDLR+FSEI
Sbjct: 80  LKCKSIYKAYMPGENGKSLLYYYDETCHPYVWINDTGGDSLRMVKQQYISLEDLRDFSEI 139

Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
           R+FRDHQRGC+SVRKK RPD C
Sbjct: 140 RVFRDHQRGCISVRKKARPDVC 161

[Close]

BLAST of Cla021664 vs. NCBI nr
Match: gi|659076516|ref|XP_008438723.1| (PREDICTED: uncharacterized protein LOC103483746 [Cucumis melo])

HSP 1 Score: 302.4 bits (773), Expect = 4.3e-79
Identity = 139/142 (97.89%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTR+WNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQY+SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
           RIFRDHQRGC+SVRKKPRPDFC
Sbjct: 121 RIFRDHQRGCISVRKKPRPDFC 142

[Close]

BLAST of Cla021664 vs. NCBI nr
Match: gi|778678588|ref|XP_011650993.1| (PREDICTED: uncharacterized protein LOC105434839 [Cucumis sativus])

HSP 1 Score: 299.7 bits (766), Expect = 2.8e-78
Identity = 139/142 (97.89%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQY+SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
           RIFRDHQRGC+SVRKK RPDFC
Sbjct: 121 RIFRDHQRGCISVRKKQRPDFC 142

[Close]

BLAST of Cla021664 vs. NCBI nr
Match: gi|590657580|ref|XP_007034603.1| (EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao])

HSP 1 Score: 267.7 bits (683), Expect = 1.2e-68
Identity = 123/148 (83.11%), Postives = 132/148 (89.19%), Query Frame = 1


Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPG G+FP G CFDGCRDH QASGFGTRIWNLSDR VELQ+RVGSILKKVH+LKPG SKR
Sbjct: 20  MPGLGIFPFGGCFDGCRDHTQASGFGTRIWNLSDRAVELQVRVGSILKKVHTLKPGSSKR 79

Query: 61  LKCKSIYKAYMPGRS------MKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDL 120
           LKCKSIYKAYMPGRS      MKSLLYYYDE C PY+W+H++GGDS RMVKQQYISLEDL
Sbjct: 80  LKCKSIYKAYMPGRSGNGSGGMKSLLYYYDETCHPYIWVHDTGGDSSRMVKQQYISLEDL 139

Query: 121 REFSEIRIFRDHQRGCVSVRKKPRPDFC 143
           R+ SEIRIFRDHQRGC+SVRKKPRPDFC
Sbjct: 140 RDCSEIRIFRDHQRGCISVRKKPRPDFC 167

[Close]

BLAST of Cla021664 vs. NCBI nr
Match: gi|703125908|ref|XP_010103425.1| (hypothetical protein L484_010025 [Morus notabilis])

HSP 1 Score: 262.3 bits (669), Expect = 4.9e-67
Identity = 118/142 (83.10%), Postives = 130/142 (91.55%), Query Frame = 1


Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MP FG+FP+G C DGCRDH Q SGFGTRIWNLSD+PVELQIRVGSILKKVH+LKPG SKR
Sbjct: 20  MPRFGIFPVGGCLDGCRDHTQGSGFGTRIWNLSDKPVELQIRVGSILKKVHTLKPGSSKR 79

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
           LKCKSIYKAYMPG + KSLLYYYDE C PYVWI+++GGDS+RMVKQQYISLEDLR+FSEI
Sbjct: 80  LKCKSIYKAYMPGENGKSLLYYYDETCHPYVWINDTGGDSLRMVKQQYISLEDLRDFSEI 139

Query: 121 RIFRDHQRGCVSVRKKPRPDFC 143
           R+FRDHQRGC+SVRKK RPD C
Sbjct: 140 RVFRDHQRGCISVRKKARPDVC 161

[Close]

BLAST of Cla021664 vs. NCBI nr
Match: gi|567853305|ref|XP_006419816.1| (hypothetical protein CICLE_v10006064mg [Citrus clementina])

HSP 1 Score: 262.3 bits (669), Expect = 4.9e-67
Identity = 118/150 (78.67%), Postives = 133/150 (88.67%), Query Frame = 1


Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           +PGFG+FP G CFDGCRDH QASGFGTRIWNLSDRPVELQ+RVGSILKKVH+LKPG SKR
Sbjct: 20  IPGFGIFPFGGCFDGCRDHTQASGFGTRIWNLSDRPVELQVRVGSILKKVHTLKPGSSKR 79

Query: 61  LKCKSIYKAYMPGRS--------MKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLE 120
           LKCKSIYKAYMPGR+        MKSLLYYYDE C PY+WIH++G D++RMVKQQY+SL+
Sbjct: 80  LKCKSIYKAYMPGRNGNNSTNGGMKSLLYYYDETCHPYIWIHDTGSDTLRMVKQQYLSLD 139

Query: 121 DLREFSEIRIFRDHQRGCVSVRKKPRPDFC 143
           DLR+ SEIR+FRDHQRGC+SVRKK RPDFC
Sbjct: 140 DLRDCSEIRVFRDHQRGCISVRKKSRPDFC 169

The following BLAST results are available for this feature:

BLAST of Cla021664 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8V0_CUCSA	1.9e-78	97.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G150060 PE=4 SV=1	[more]
A0A061ET99_THECC	8.1e-69	83.11	EF-hand calcium-binding domain-containing protein 4A OS=Theobroma cacao GN=TCM_0...	[more]
A0A067G869_CITSI	3.4e-67	78.67	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040596mg PE=4 SV=1	[more]
V4S820_9ROSI	3.4e-67	78.67	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006064mg PE=4 SV=1	[more]
W9RWH9_9ROSA	3.4e-67	83.10	Uncharacterized protein OS=Morus notabilis GN=L484_010025 PE=4 SV=1	[more]

BLAST of Cla021664 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659076516\|ref\|XP_008438723.1\|	4.3e-79	97.89	PREDICTED: uncharacterized protein LOC103483746 [Cucumis melo]	[more]
gi\|778678588\|ref\|XP_011650993.1\|	2.8e-78	97.89	PREDICTED: uncharacterized protein LOC105434839 [Cucumis sativus]	[more]
gi\|590657580\|ref\|XP_007034603.1\|	1.2e-68	83.11	EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao]	[more]
gi\|703125908\|ref\|XP_010103425.1\|	4.9e-67	83.10	hypothetical protein L484_010025 [Morus notabilis]	[more]
gi\|567853305\|ref\|XP_006419816.1\|	4.9e-67	78.67	hypothetical protein CICLE_v10006064mg [Citrus clementina]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU44849	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla021664	Cla021664.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU44849	WMU44849	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla021664	Cla97C05G086780	Watermelon (97103) v2	wmwmbB206
Cla021664	Csa3G150060	Cucumber (Chinese Long) v2	cuwmB233
Cla021664	MELO3C006567	Melon (DHL92) v3.5.1	mewmB461
Cla021664	ClCG05G005440	Watermelon (Charleston Gray)	wcgwmB286
Cla021664	CSPI03G13510	Wild cucumber (PI 183967)	cpiwmB231
Cla021664	Cucsa.253980	Cucumber (Gy14) v1	cgywmB479
Cla021664	CmaCh06G014350	Cucurbita maxima (Rimu)	cmawmB798
Cla021664	CmoCh06G014380	Cucurbita moschata (Rifu)	cmowmB793
Cla021664	Lsi05G014570	Bottle gourd (USVL1VR-Ls)	lsiwmB362
Cla021664	Cp4.1LG08g04530	Cucurbita pepo (Zucchini)	cpewmB845
Cla021664	CsGy3G013630	Cucumber (Gy14) v2	cgybwmB217
Cla021664	MELO3C006567.2	Melon (DHL92) v3.6.1	medwmB447
Cla021664	Carg17398	Silver-seed gourd	carwmB0603
Cla021664	CsaV3_3G013730	Cucumber (Chinese Long) v3	cucwmB239
Cla021664	Bhi01G000633	Wax gourd	wgowmB201

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla021664	Silver-seed gourd	carwmB0070
Cla021664	Silver-seed gourd	carwmB0211
Cla021664	Silver-seed gourd	carwmB0316
Cla021664	Watermelon (97103) v2	wmwmbB217
Cla021664	Wax gourd	wgowmB068
Cla021664	Watermelon (97103) v1	wmwmB138
Cla021664	Cucurbita maxima (Rimu)	cmawmB242
Cla021664	Cucurbita maxima (Rimu)	cmawmB344
Cla021664	Cucurbita maxima (Rimu)	cmawmB869
Cla021664	Cucurbita moschata (Rifu)	cmowmB231
Cla021664	Cucurbita moschata (Rifu)	cmowmB341
Cla021664	Cucurbita moschata (Rifu)	cmowmB856
Cla021664	Melon (DHL92) v3.5.1	mewmB096
Cla021664	Watermelon (Charleston Gray)	wcgwmB332
Cla021664	Cucurbita pepo (Zucchini)	cpewmB152
Cla021664	Cucurbita pepo (Zucchini)	cpewmB331
Cla021664	Cucurbita pepo (Zucchini)	cpewmB613
Cla021664	Bottle gourd (USVL1VR-Ls)	lsiwmB017
Cla021664	Melon (DHL92) v3.6.1	medwmB094
Cla021664	Melon (DHL92) v3.6.1	medwmB228