Carg17398 (gene) Silver-seed gourd

NameCarg17398
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRING zinc finger protein
LocationCucurbita_argyrosperma_scaffold_092 : 417566 .. 417994 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGGGGTTCGGTGTTTTCCCTCTTGGTAGCTGTTTCGATGGGTGCCGAGACCACGCTCAAGCGTCGGGATTCGGCACGCGTATATGGAACTTGAGCGACAGGCCGGTCGAGCTGCAGATAAGGGTAGGATCAATATTGAAAAAGGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGTAAGAGCATTTACAAAGCATATATGCCAGGAAGGAGTATGAAGAGCTTGCTTTATTACTATGATGAAGCTTGCCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAGCAACAATTTATCAGTCTTGAAGATTTGAGGGAGTTTTCTGAGATTAGAATCTTTCGGGATCATCAGCGCGGTTGCGTATCGGTTCGGAAGAAACCGAGGCTCGGTTTCTGCTGA

mRNA sequence

ATGCCGGGGTTCGGTGTTTTCCCTCTTGGTAGCTGTTTCGATGGGTGCCGAGACCACGCTCAAGCGTCGGGATTCGGCACGCGTATATGGAACTTGAGCGACAGGCCGGTCGAGCTGCAGATAAGGGTAGGATCAATATTGAAAAAGGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGTAAGAGCATTTACAAAGCATATATGCCAGGAAGGAGTATGAAGAGCTTGCTTTATTACTATGATGAAGCTTGCCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAGCAACAATTTATCAGTCTTGAAGATTTGAGGGAGTTTTCTGAGATTAGAATCTTTCGGGATCATCAGCGCGGTTGCGTATCGGTTCGGAAGAAACCGAGGCTCGGTTTCTGCTGA

Coding sequence (CDS)

ATGCCGGGGTTCGGTGTTTTCCCTCTTGGTAGCTGTTTCGATGGGTGCCGAGACCACGCTCAAGCGTCGGGATTCGGCACGCGTATATGGAACTTGAGCGACAGGCCGGTCGAGCTGCAGATAAGGGTAGGATCAATATTGAAAAAGGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGTAAGAGCATTTACAAAGCATATATGCCAGGAAGGAGTATGAAGAGCTTGCTTTATTACTATGATGAAGCTTGCCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAGCAACAATTTATCAGTCTTGAAGATTTGAGGGAGTTTTCTGAGATTAGAATCTTTCGGGATCATCAGCGCGGTTGCGTATCGGTTCGGAAGAAACCGAGGCTCGGTTTCTGCTGA

Protein sequence

MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKRLKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEIRIFRDHQRGCVSVRKKPRLGFC
BLAST of Carg17398 vs. NCBI nr
Match: XP_022936946.1 (uncharacterized protein LOC111443378 [Cucurbita moschata])

HSP 1 Score: 304.7 bits (779), Expect = 1.7e-79
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120

Query: 121 RIFRDHQRGCVSVRKKPRLGFC 143
           RIFRDHQRGCVSVRKKPRLGFC
Sbjct: 121 RIFRDHQRGCVSVRKKPRLGFC 142

BLAST of Carg17398 vs. NCBI nr
Match: XP_023522910.1 (uncharacterized protein LOC111786960 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 304.3 bits (778), Expect = 2.2e-79
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRP+ELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPIELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120

Query: 121 RIFRDHQRGCVSVRKKPRLGFC 143
           RIFRDHQRGCVSVRKKPRLGFC
Sbjct: 121 RIFRDHQRGCVSVRKKPRLGFC 142

BLAST of Carg17398 vs. NCBI nr
Match: XP_022973671.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111472255 [Cucurbita maxima])

HSP 1 Score: 301.2 bits (770), Expect = 1.8e-78
Identity = 140/142 (98.59%), Postives = 140/142 (98.59%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDH QASGFGTRIWNLSDRPVELQIRVG ILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHTQASGFGTRIWNLSDRPVELQIRVGXILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120

Query: 121 RIFRDHQRGCVSVRKKPRLGFC 143
           RIFRDHQRGCVSVRKKPRLGFC
Sbjct: 121 RIFRDHQRGCVSVRKKPRLGFC 142

BLAST of Carg17398 vs. NCBI nr
Match: XP_008438723.1 (PREDICTED: uncharacterized protein LOC103483746 [Cucumis melo])

HSP 1 Score: 297.0 bits (759), Expect = 3.5e-77
Identity = 136/142 (95.77%), Postives = 140/142 (98.59%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTR+WNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQ++SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCVSVRKKPRLGFC 143
           RIFRDHQRGC+SVRKKPR  FC
Sbjct: 121 RIFRDHQRGCISVRKKPRPDFC 142

BLAST of Carg17398 vs. NCBI nr
Match: XP_011650993.1 (PREDICTED: uncharacterized protein LOC105434839 [Cucumis sativus] >KGN57027.1 hypothetical protein Csa_3G150060 [Cucumis sativus])

HSP 1 Score: 294.3 bits (752), Expect = 2.3e-76
Identity = 136/142 (95.77%), Postives = 139/142 (97.89%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQ++SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCVSVRKKPRLGFC 143
           RIFRDHQRGC+SVRKK R  FC
Sbjct: 121 RIFRDHQRGCISVRKKQRPDFC 142

BLAST of Carg17398 vs. TAIR10
Match: AT3G06145.1 (unknown protein)

HSP 1 Score: 162.5 bits (410), Expect = 1.9e-40
Identity = 77/135 (57.04%), Postives = 101/135 (74.81%), Query Frame = 0

Query: 9   LGSCFDGCRDH-----AQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKRLKC 68
           L  C+ GC D         +   TR WNLSDRPVELQIRVGSILK+VH+LKPG SK+L+ 
Sbjct: 28  LRQCYGGCGDRTHLLPCSIATTSTRFWNLSDRPVELQIRVGSILKRVHTLKPGRSKKLRH 87

Query: 69  KSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEIRIF 128
           +SI++AY+  +  +  L YYD+ C PYVW+HE+G D  +MVKQQ++SLEDLR++SEIR+F
Sbjct: 88  RSIHRAYVDDQEGRRWL-YYDDTCLPYVWVHETGTDLSKMVKQQYVSLEDLRDYSEIRVF 147

Query: 129 RDHQRGCVSVRKKPR 139
           +D QRGCV+V K+ R
Sbjct: 148 KDLQRGCVAVEKRDR 161

BLAST of Carg17398 vs. TrEMBL
Match: tr|A0A1S3AWR3|A0A1S3AWR3_CUCME (uncharacterized protein LOC103483746 OS=Cucumis melo OX=3656 GN=LOC103483746 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 2.3e-77
Identity = 136/142 (95.77%), Postives = 140/142 (98.59%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTR+WNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQ++SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCVSVRKKPRLGFC 143
           RIFRDHQRGC+SVRKKPR  FC
Sbjct: 121 RIFRDHQRGCISVRKKPRPDFC 142

BLAST of Carg17398 vs. TrEMBL
Match: tr|A0A0A0L8V0|A0A0A0L8V0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G150060 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 1.5e-76
Identity = 136/142 (95.77%), Postives = 139/142 (97.89%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQ++SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCVSVRKKPRLGFC 143
           RIFRDHQRGC+SVRKK R  FC
Sbjct: 121 RIFRDHQRGCISVRKKQRPDFC 142

BLAST of Carg17398 vs. TrEMBL
Match: tr|A0A1R3IS40|A0A1R3IS40_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_21648 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.5e-68
Identity = 121/151 (80.13%), Postives = 132/151 (87.42%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPG G+FP G CFDGCRDH QASGFGTR+WNLSDRPVELQ+RVGSILKKVH+LKPGCSKR
Sbjct: 1   MPGLGIFPFGGCFDGCRDHTQASGFGTRVWNLSDRPVELQVRVGSILKKVHTLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRS---------MKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISL 120
           LKCKSIYKAYMPGRS         MKSLLYYYDE C PY+W+H++GGDS RMVKQQ+ISL
Sbjct: 61  LKCKSIYKAYMPGRSGNNGSANAGMKSLLYYYDETCHPYIWVHDTGGDSSRMVKQQYISL 120

Query: 121 EDLREFSEIRIFRDHQRGCVSVRKKPRLGFC 143
           EDLR+ SEIRIFRDHQRGC+SVRKKPR  FC
Sbjct: 121 EDLRDCSEIRIFRDHQRGCISVRKKPRPDFC 151

BLAST of Carg17398 vs. TrEMBL
Match: tr|A0A1R3GAK7|A0A1R3GAK7_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_27392 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 3.7e-67
Identity = 119/152 (78.29%), Postives = 131/152 (86.18%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPG G+FP G CFDGCRDH Q+SGFGTR+WNLSDRPVELQ+RVGSILKKVH+LKPGCSKR
Sbjct: 1   MPGLGIFPFGGCFDGCRDHTQSSGFGTRVWNLSDRPVELQVRVGSILKKVHTLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRS----------MKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFIS 120
           LKCKSIYKAYMPGRS          MKSLLYYYDE C PY+W+H++GGDS RMVKQQ+IS
Sbjct: 61  LKCKSIYKAYMPGRSGNNGSANYAGMKSLLYYYDETCHPYIWVHDTGGDSSRMVKQQYIS 120

Query: 121 LEDLREFSEIRIFRDHQRGCVSVRKKPRLGFC 143
           LEDLR+ SEIRIFRDHQRGC+SVRKK R  FC
Sbjct: 121 LEDLRDCSEIRIFRDHQRGCISVRKKARPDFC 152

BLAST of Carg17398 vs. TrEMBL
Match: tr|A0A061ET99|A0A061ET99_THECC (EF-hand calcium-binding domain-containing protein 4A OS=Theobroma cacao OX=3641 GN=TCM_020511 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 6.3e-67
Identity = 120/148 (81.08%), Postives = 130/148 (87.84%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPG G+FP G CFDGCRDH QASGFGTRIWNLSDR VELQ+RVGSILKKVH+LKPG SKR
Sbjct: 20  MPGLGIFPFGGCFDGCRDHTQASGFGTRIWNLSDRAVELQVRVGSILKKVHTLKPGSSKR 79

Query: 61  LKCKSIYKAYMPGRS------MKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDL 120
           LKCKSIYKAYMPGRS      MKSLLYYYDE C PY+W+H++GGDS RMVKQQ+ISLEDL
Sbjct: 80  LKCKSIYKAYMPGRSGNGSGGMKSLLYYYDETCHPYIWVHDTGGDSSRMVKQQYISLEDL 139

Query: 121 REFSEIRIFRDHQRGCVSVRKKPRLGFC 143
           R+ SEIRIFRDHQRGC+SVRKKPR  FC
Sbjct: 140 RDCSEIRIFRDHQRGCISVRKKPRPDFC 167

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022936946.11.7e-79100.00uncharacterized protein LOC111443378 [Cucurbita moschata][more]
XP_023522910.12.2e-7999.30uncharacterized protein LOC111786960 [Cucurbita pepo subsp. pepo][more]
XP_022973671.11.8e-7898.59LOW QUALITY PROTEIN: uncharacterized protein LOC111472255 [Cucurbita maxima][more]
XP_008438723.13.5e-7795.77PREDICTED: uncharacterized protein LOC103483746 [Cucumis melo][more]
XP_011650993.12.3e-7695.77PREDICTED: uncharacterized protein LOC105434839 [Cucumis sativus] >KGN57027.1 hy... [more]
Match NameE-valueIdentityDescription
AT3G06145.11.9e-4057.04unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3AWR3|A0A1S3AWR3_CUCME2.3e-7795.77uncharacterized protein LOC103483746 OS=Cucumis melo OX=3656 GN=LOC103483746 PE=... [more]
tr|A0A0A0L8V0|A0A0A0L8V0_CUCSA1.5e-7695.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G150060 PE=4 SV=1[more]
tr|A0A1R3IS40|A0A1R3IS40_9ROSI1.5e-6880.13Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_21648 PE=4 SV=1[more]
tr|A0A1R3GAK7|A0A1R3GAK7_COCAP3.7e-6778.29Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_27392 PE=4 ... [more]
tr|A0A061ET99|A0A061ET99_THECC6.3e-6781.08EF-hand calcium-binding domain-containing protein 4A OS=Theobroma cacao OX=3641 ... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17398-RACarg17398-RAmRNA


The following gene(s) are paralogous to this gene:

None