CmoCh06G014380 (gene) Cucurbita moschata (Rifu)

NameCmoCh06G014380
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRING zinc finger protein, putative
LocationCmo_Chr06 : 10414501 .. 10414929 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGGGGTTCGGTGTTTTCCCTCTTGGTAGCTGTTTCGATGGGTGCCGAGACCACGCTCAAGCGTCGGGATTCGGCACGCGTATATGGAACTTGAGCGACAGGCCGGTCGAGCTGCAGATAAGGGTAGGATCAATATTGAAAAAGGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGTAAGAGCATTTACAAAGCATATATGCCAGGAAGGAGTATGAAGAGCTTGCTTTATTACTATGATGAAGCTTGCCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAGCAACAATTTATCAGTCTTGAAGATTTGAGGGAGTTTTCTGAGATTAGAATCTTTCGGGATCATCAGCGCGGTTGCGTATCGGTTCGGAAGAAACCGAGGCTCGGTTTCTGCTGA

mRNA sequence

ATGCCGGGGTTCGGTGTTTTCCCTCTTGGTAGCTGTTTCGATGGGTGCCGAGACCACGCTCAAGCGTCGGGATTCGGCACGCGTATATGGAACTTGAGCGACAGGCCGGTCGAGCTGCAGATAAGGGTAGGATCAATATTGAAAAAGGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGTAAGAGCATTTACAAAGCATATATGCCAGGAAGGAGTATGAAGAGCTTGCTTTATTACTATGATGAAGCTTGCCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAGCAACAATTTATCAGTCTTGAAGATTTGAGGGAGTTTTCTGAGATTAGAATCTTTCGGGATCATCAGCGCGGTTGCGTATCGGTTCGGAAGAAACCGAGGCTCGGTTTCTGCTGA

Coding sequence (CDS)

ATGCCGGGGTTCGGTGTTTTCCCTCTTGGTAGCTGTTTCGATGGGTGCCGAGACCACGCTCAAGCGTCGGGATTCGGCACGCGTATATGGAACTTGAGCGACAGGCCGGTCGAGCTGCAGATAAGGGTAGGATCAATATTGAAAAAGGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGTAAGAGCATTTACAAAGCATATATGCCAGGAAGGAGTATGAAGAGCTTGCTTTATTACTATGATGAAGCTTGCCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAGCAACAATTTATCAGTCTTGAAGATTTGAGGGAGTTTTCTGAGATTAGAATCTTTCGGGATCATCAGCGCGGTTGCGTATCGGTTCGGAAGAAACCGAGGCTCGGTTTCTGCTGA
BLAST of CmoCh06G014380 vs. TrEMBL
Match: A0A0A0L8V0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G150060 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 8.1e-77
Identity = 136/142 (95.77%), Postives = 139/142 (97.89%), Query Frame = 1

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQ++SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCVSVRKKPRLGFC 143
           RIFRDHQRGC+SVRKK R  FC
Sbjct: 121 RIFRDHQRGCISVRKKQRPDFC 142

BLAST of CmoCh06G014380 vs. TrEMBL
Match: A0A061ET99_THECC (EF-hand calcium-binding domain-containing protein 4A OS=Theobroma cacao GN=TCM_020511 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 3.4e-67
Identity = 120/148 (81.08%), Postives = 130/148 (87.84%), Query Frame = 1

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPG G+FP G CFDGCRDH QASGFGTRIWNLSDR VELQ+RVGSILKKVH+LKPG SKR
Sbjct: 20  MPGLGIFPFGGCFDGCRDHTQASGFGTRIWNLSDRAVELQVRVGSILKKVHTLKPGSSKR 79

Query: 61  LKCKSIYKAYMPGRS------MKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDL 120
           LKCKSIYKAYMPGRS      MKSLLYYYDE C PY+W+H++GGDS RMVKQQ+ISLEDL
Sbjct: 80  LKCKSIYKAYMPGRSGNGSGGMKSLLYYYDETCHPYIWVHDTGGDSSRMVKQQYISLEDL 139

Query: 121 REFSEIRIFRDHQRGCVSVRKKPRLGFC 143
           R+ SEIRIFRDHQRGC+SVRKKPR  FC
Sbjct: 140 RDCSEIRIFRDHQRGCISVRKKPRPDFC 167

BLAST of CmoCh06G014380 vs. TrEMBL
Match: A0A067G869_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040596mg PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.4e-65
Identity = 115/150 (76.67%), Postives = 131/150 (87.33%), Query Frame = 1

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           +PGFG+FP G CFDGCRDH QASGFGTRIWNLSDRPVELQ+RVGSILKKVH+LKPG SKR
Sbjct: 20  IPGFGIFPFGGCFDGCRDHTQASGFGTRIWNLSDRPVELQVRVGSILKKVHTLKPGSSKR 79

Query: 61  LKCKSIYKAYMPGRS--------MKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLE 120
           LKCKSIYKAYMPGR+        MKSLLYYYDE C PY+WIH++G D++RMVKQQ++SL+
Sbjct: 80  LKCKSIYKAYMPGRNGNNSTNGGMKSLLYYYDETCHPYIWIHDTGSDTLRMVKQQYLSLD 139

Query: 121 DLREFSEIRIFRDHQRGCVSVRKKPRLGFC 143
           DLR+ SEIR+FRDHQRGC+SVRKK R  FC
Sbjct: 140 DLRDCSEIRVFRDHQRGCISVRKKSRPDFC 169

BLAST of CmoCh06G014380 vs. TrEMBL
Match: V4S820_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006064mg PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.4e-65
Identity = 115/150 (76.67%), Postives = 131/150 (87.33%), Query Frame = 1

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           +PGFG+FP G CFDGCRDH QASGFGTRIWNLSDRPVELQ+RVGSILKKVH+LKPG SKR
Sbjct: 20  IPGFGIFPFGGCFDGCRDHTQASGFGTRIWNLSDRPVELQVRVGSILKKVHTLKPGSSKR 79

Query: 61  LKCKSIYKAYMPGRS--------MKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLE 120
           LKCKSIYKAYMPGR+        MKSLLYYYDE C PY+WIH++G D++RMVKQQ++SL+
Sbjct: 80  LKCKSIYKAYMPGRNGNNSTNGGMKSLLYYYDETCHPYIWIHDTGSDTLRMVKQQYLSLD 139

Query: 121 DLREFSEIRIFRDHQRGCVSVRKKPRLGFC 143
           DLR+ SEIR+FRDHQRGC+SVRKK R  FC
Sbjct: 140 DLRDCSEIRVFRDHQRGCISVRKKSRPDFC 169

BLAST of CmoCh06G014380 vs. TrEMBL
Match: W9RWH9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010025 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.4e-65
Identity = 115/142 (80.99%), Postives = 128/142 (90.14%), Query Frame = 1

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MP FG+FP+G C DGCRDH Q SGFGTRIWNLSD+PVELQIRVGSILKKVH+LKPG SKR
Sbjct: 20  MPRFGIFPVGGCLDGCRDHTQGSGFGTRIWNLSDKPVELQIRVGSILKKVHTLKPGSSKR 79

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120
           LKCKSIYKAYMPG + KSLLYYYDE C PYVWI+++GGDS+RMVKQQ+ISLEDLR+FSEI
Sbjct: 80  LKCKSIYKAYMPGENGKSLLYYYDETCHPYVWINDTGGDSLRMVKQQYISLEDLRDFSEI 139

Query: 121 RIFRDHQRGCVSVRKKPRLGFC 143
           R+FRDHQRGC+SVRKK R   C
Sbjct: 140 RVFRDHQRGCISVRKKARPDVC 161

BLAST of CmoCh06G014380 vs. TAIR10
Match: AT3G06145.1 (AT3G06145.1 unknown protein)

HSP 1 Score: 162.5 bits (410), Expect = 1.9e-40
Identity = 77/135 (57.04%), Postives = 101/135 (74.81%), Query Frame = 1

Query: 9   LGSCFDGCRDHAQA-----SGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKRLKC 68
           L  C+ GC D         +   TR WNLSDRPVELQIRVGSILK+VH+LKPG SK+L+ 
Sbjct: 28  LRQCYGGCGDRTHLLPCSIATTSTRFWNLSDRPVELQIRVGSILKRVHTLKPGRSKKLRH 87

Query: 69  KSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEIRIF 128
           +SI++AY+  +  +  LYY D+ C PYVW+HE+G D  +MVKQQ++SLEDLR++SEIR+F
Sbjct: 88  RSIHRAYVDDQEGRRWLYY-DDTCLPYVWVHETGTDLSKMVKQQYVSLEDLRDYSEIRVF 147

Query: 129 RDHQRGCVSVRKKPR 139
           +D QRGCV+V K+ R
Sbjct: 148 KDLQRGCVAVEKRDR 161

BLAST of CmoCh06G014380 vs. NCBI nr
Match: gi|659076516|ref|XP_008438723.1| (PREDICTED: uncharacterized protein LOC103483746 [Cucumis melo])

HSP 1 Score: 297.0 bits (759), Expect = 1.8e-77
Identity = 136/142 (95.77%), Postives = 140/142 (98.59%), Query Frame = 1

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTR+WNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQ++SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCVSVRKKPRLGFC 143
           RIFRDHQRGC+SVRKKPR  FC
Sbjct: 121 RIFRDHQRGCISVRKKPRPDFC 142

BLAST of CmoCh06G014380 vs. NCBI nr
Match: gi|778678588|ref|XP_011650993.1| (PREDICTED: uncharacterized protein LOC105434839 [Cucumis sativus])

HSP 1 Score: 294.3 bits (752), Expect = 1.2e-76
Identity = 136/142 (95.77%), Postives = 139/142 (97.89%), Query Frame = 1

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQ++SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCVSVRKKPRLGFC 143
           RIFRDHQRGC+SVRKK R  FC
Sbjct: 121 RIFRDHQRGCISVRKKQRPDFC 142

BLAST of CmoCh06G014380 vs. NCBI nr
Match: gi|590657580|ref|XP_007034603.1| (EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao])

HSP 1 Score: 262.3 bits (669), Expect = 4.9e-67
Identity = 120/148 (81.08%), Postives = 130/148 (87.84%), Query Frame = 1

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPG G+FP G CFDGCRDH QASGFGTRIWNLSDR VELQ+RVGSILKKVH+LKPG SKR
Sbjct: 20  MPGLGIFPFGGCFDGCRDHTQASGFGTRIWNLSDRAVELQVRVGSILKKVHTLKPGSSKR 79

Query: 61  LKCKSIYKAYMPGRS------MKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDL 120
           LKCKSIYKAYMPGRS      MKSLLYYYDE C PY+W+H++GGDS RMVKQQ+ISLEDL
Sbjct: 80  LKCKSIYKAYMPGRSGNGSGGMKSLLYYYDETCHPYIWVHDTGGDSSRMVKQQYISLEDL 139

Query: 121 REFSEIRIFRDHQRGCVSVRKKPRLGFC 143
           R+ SEIRIFRDHQRGC+SVRKKPR  FC
Sbjct: 140 RDCSEIRIFRDHQRGCISVRKKPRPDFC 167

BLAST of CmoCh06G014380 vs. NCBI nr
Match: gi|703125908|ref|XP_010103425.1| (hypothetical protein L484_010025 [Morus notabilis])

HSP 1 Score: 256.9 bits (655), Expect = 2.0e-65
Identity = 115/142 (80.99%), Postives = 128/142 (90.14%), Query Frame = 1

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MP FG+FP+G C DGCRDH Q SGFGTRIWNLSD+PVELQIRVGSILKKVH+LKPG SKR
Sbjct: 20  MPRFGIFPVGGCLDGCRDHTQGSGFGTRIWNLSDKPVELQIRVGSILKKVHTLKPGSSKR 79

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120
           LKCKSIYKAYMPG + KSLLYYYDE C PYVWI+++GGDS+RMVKQQ+ISLEDLR+FSEI
Sbjct: 80  LKCKSIYKAYMPGENGKSLLYYYDETCHPYVWINDTGGDSLRMVKQQYISLEDLRDFSEI 139

Query: 121 RIFRDHQRGCVSVRKKPRLGFC 143
           R+FRDHQRGC+SVRKK R   C
Sbjct: 140 RVFRDHQRGCISVRKKARPDVC 161

BLAST of CmoCh06G014380 vs. NCBI nr
Match: gi|567853305|ref|XP_006419816.1| (hypothetical protein CICLE_v10006064mg [Citrus clementina])

HSP 1 Score: 256.9 bits (655), Expect = 2.0e-65
Identity = 115/150 (76.67%), Postives = 131/150 (87.33%), Query Frame = 1

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           +PGFG+FP G CFDGCRDH QASGFGTRIWNLSDRPVELQ+RVGSILKKVH+LKPG SKR
Sbjct: 20  IPGFGIFPFGGCFDGCRDHTQASGFGTRIWNLSDRPVELQVRVGSILKKVHTLKPGSSKR 79

Query: 61  LKCKSIYKAYMPGRS--------MKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLE 120
           LKCKSIYKAYMPGR+        MKSLLYYYDE C PY+WIH++G D++RMVKQQ++SL+
Sbjct: 80  LKCKSIYKAYMPGRNGNNSTNGGMKSLLYYYDETCHPYIWIHDTGSDTLRMVKQQYLSLD 139

Query: 121 DLREFSEIRIFRDHQRGCVSVRKKPRLGFC 143
           DLR+ SEIR+FRDHQRGC+SVRKK R  FC
Sbjct: 140 DLRDCSEIRVFRDHQRGCISVRKKSRPDFC 169

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L8V0_CUCSA8.1e-7795.77Uncharacterized protein OS=Cucumis sativus GN=Csa_3G150060 PE=4 SV=1[more]
A0A061ET99_THECC3.4e-6781.08EF-hand calcium-binding domain-containing protein 4A OS=Theobroma cacao GN=TCM_0... [more]
A0A067G869_CITSI1.4e-6576.67Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040596mg PE=4 SV=1[more]
V4S820_9ROSI1.4e-6576.67Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006064mg PE=4 SV=1[more]
W9RWH9_9ROSA1.4e-6580.99Uncharacterized protein OS=Morus notabilis GN=L484_010025 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G06145.11.9e-4057.04 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659076516|ref|XP_008438723.1|1.8e-7795.77PREDICTED: uncharacterized protein LOC103483746 [Cucumis melo][more]
gi|778678588|ref|XP_011650993.1|1.2e-7695.77PREDICTED: uncharacterized protein LOC105434839 [Cucumis sativus][more]
gi|590657580|ref|XP_007034603.1|4.9e-6781.08EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao][more]
gi|703125908|ref|XP_010103425.1|2.0e-6580.99hypothetical protein L484_010025 [Morus notabilis][more]
gi|567853305|ref|XP_006419816.1|2.0e-6576.67hypothetical protein CICLE_v10006064mg [Citrus clementina][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G014380.1CmoCh06G014380.1mRNA


The following gene(s) are paralogous to this gene:

None