MELO3C006567.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C006567.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionEF-hand calcium-binding domain-containing protein 4A
Locationchr06 : 4226276 .. 4226961 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTCTTTCACATTTGGGAGGGTGGCAAAAGCAGAACCAACACTTCGAGTTGTTTTTCGATCACTGGGTTGAAAGATGCCAGGATTTGGTGTTTTCCCTCTTGGTAGCTGCTTTGATGGGTGTAGAGACCATGCTCAAGCGTCGGGATTTGGCACTCGAGTATGGAACTTGAGCGATAGGCCAGTGGAGCTGCAGATAAGGGTGGGATCGATATTGAAAAAAGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGTAAGAGTATTTACAAAGCATATATGCCTGGAAGGAGTATGAAGAGCTTGCTTTATTACTATGATGAAGCTTGTCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAACAACAATACGTCAGTCTTGAAGATCTAAGGGAGTTTTCTGAGATCAGAATCTTTAGGGATCATCAACGTGGCTGCATATCGGTTCGTAAGAAACCAAGGCCCGACTTTTGCTGAATTTTACACTCATAAATGTGTTTGCCTTCAACCTCTGTAACTTCTATATGAATGTTGTTCTTGTTTTTGAAGTCTGCAATGTCCACTTGTCTTTCCATGTTCTGTTTTTTCTTTGGAAGTGAACAAAATCAGATGACATTGTTTCGGTGTATTGCTTTAAACACCCAGAGTTCTCTTGCTGTA

mRNA sequence

AGTCTTTCACATTTGGGAGGGTGGCAAAAGCAGAACCAACACTTCGAGTTGTTTTTCGATCACTGGGTTGAAAGATGCCAGGATTTGGTGTTTTCCCTCTTGGTAGCTGCTTTGATGGGTGTAGAGACCATGCTCAAGCGTCGGGATTTGGCACTCGAGTATGGAACTTGAGCGATAGGCCAGTGGAGCTGCAGATAAGGGTGGGATCGATATTGAAAAAAGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGTAAGAGTATTTACAAAGCATATATGCCTGGAAGGAGTATGAAGAGCTTGCTTTATTACTATGATGAAGCTTGTCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAACAACAATACGTCAGTCTTGAAGATCTAAGGGAGTTTTCTGAGATCAGAATCTTTAGGGATCATCAACGTGGCTGCATATCGGTTCGTAAGAAACCAAGGCCCGACTTTTGCTGAATTTTACACTCATAAATGTGTTTGCCTTCAACCTCTGTAACTTCTATATGAATGTTGTTCTTGTTTTTGAAGTCTGCAATGTCCACTTGTCTTTCCATGTTCTGTTTTTTCTTTGGAAGTGAACAAAATCAGATGACATTGTTTCGGTGTATTGCTTTAAACACCCAGAGTTCTCTTGCTGTA

Coding sequence (CDS)

ATGCCAGGATTTGGTGTTTTCCCTCTTGGTAGCTGCTTTGATGGGTGTAGAGACCATGCTCAAGCGTCGGGATTTGGCACTCGAGTATGGAACTTGAGCGATAGGCCAGTGGAGCTGCAGATAAGGGTGGGATCGATATTGAAAAAAGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGTAAGAGTATTTACAAAGCATATATGCCTGGAAGGAGTATGAAGAGCTTGCTTTATTACTATGATGAAGCTTGTCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAACAACAATACGTCAGTCTTGAAGATCTAAGGGAGTTTTCTGAGATCAGAATCTTTAGGGATCATCAACGTGGCTGCATATCGGTTCGTAAGAAACCAAGGCCCGACTTTTGCTGA

Protein sequence

MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKRLKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEIRIFRDHQRGCISVRKKPRPDFC
BLAST of MELO3C006567.2 vs. NCBI nr
Match: XP_008438723.1 (PREDICTED: uncharacterized protein LOC103483746 [Cucumis melo])

HSP 1 Score: 305.8 bits (782), Expect = 7.5e-80
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCISVRKKPRPDFC 143
           RIFRDHQRGCISVRKKPRPDFC
Sbjct: 121 RIFRDHQRGCISVRKKPRPDFC 142

BLAST of MELO3C006567.2 vs. NCBI nr
Match: XP_011650993.1 (PREDICTED: uncharacterized protein LOC105434839 [Cucumis sativus] >KGN57027.1 hypothetical protein Csa_3G150060 [Cucumis sativus])

HSP 1 Score: 302.4 bits (773), Expect = 8.3e-79
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTR+WNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCISVRKKPRPDFC 143
           RIFRDHQRGCISVRKK RPDFC
Sbjct: 121 RIFRDHQRGCISVRKKQRPDFC 142

BLAST of MELO3C006567.2 vs. NCBI nr
Match: XP_022936946.1 (uncharacterized protein LOC111443378 [Cucurbita moschata])

HSP 1 Score: 296.6 bits (758), Expect = 4.5e-77
Identity = 136/142 (95.77%), Postives = 140/142 (98.59%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTR+WNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQ++SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120

Query: 121 RIFRDHQRGCISVRKKPRPDFC 143
           RIFRDHQRGC+SVRKKPR  FC
Sbjct: 121 RIFRDHQRGCVSVRKKPRLGFC 142

BLAST of MELO3C006567.2 vs. NCBI nr
Match: XP_023522910.1 (uncharacterized protein LOC111786960 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 296.2 bits (757), Expect = 5.9e-77
Identity = 135/142 (95.07%), Postives = 140/142 (98.59%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTR+WNLSDRP+ELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPIELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQ++SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120

Query: 121 RIFRDHQRGCISVRKKPRPDFC 143
           RIFRDHQRGC+SVRKKPR  FC
Sbjct: 121 RIFRDHQRGCVSVRKKPRLGFC 142

BLAST of MELO3C006567.2 vs. NCBI nr
Match: XP_022973671.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111472255 [Cucurbita maxima])

HSP 1 Score: 293.1 bits (749), Expect = 5.0e-76
Identity = 134/142 (94.37%), Postives = 138/142 (97.18%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDH QASGFGTR+WNLSDRPVELQIRVG ILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHTQASGFGTRIWNLSDRPVELQIRVGXILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQ++SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120

Query: 121 RIFRDHQRGCISVRKKPRPDFC 143
           RIFRDHQRGC+SVRKKPR  FC
Sbjct: 121 RIFRDHQRGCVSVRKKPRLGFC 142

BLAST of MELO3C006567.2 vs. TAIR10
Match: AT3G06145.1 (unknown protein)

HSP 1 Score: 163.3 bits (412), Expect = 1.1e-40
Identity = 78/135 (57.78%), Postives = 101/135 (74.81%), Query Frame = 0

Query: 9   LGSCFDGCRDH-----AQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKRLKC 68
           L  C+ GC D         +   TR WNLSDRPVELQIRVGSILK+VH+LKPG SK+L+ 
Sbjct: 28  LRQCYGGCGDRTHLLPCSIATTSTRFWNLSDRPVELQIRVGSILKRVHTLKPGRSKKLRH 87

Query: 69  KSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEIRIF 128
           +SI++AY+  +  +  L YYD+ C PYVW+HE+G D  +MVKQQYVSLEDLR++SEIR+F
Sbjct: 88  RSIHRAYVDDQEGRRWL-YYDDTCLPYVWVHETGTDLSKMVKQQYVSLEDLRDYSEIRVF 147

Query: 129 RDHQRGCISVRKKPR 139
           +D QRGC++V K+ R
Sbjct: 148 KDLQRGCVAVEKRDR 161

BLAST of MELO3C006567.2 vs. TrEMBL
Match: tr|A0A1S3AWR3|A0A1S3AWR3_CUCME (uncharacterized protein LOC103483746 OS=Cucumis melo OX=3656 GN=LOC103483746 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 4.9e-80
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCISVRKKPRPDFC 143
           RIFRDHQRGCISVRKKPRPDFC
Sbjct: 121 RIFRDHQRGCISVRKKPRPDFC 142

BLAST of MELO3C006567.2 vs. TrEMBL
Match: tr|A0A0A0L8V0|A0A0A0L8V0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G150060 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 5.5e-79
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTR+WNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCISVRKKPRPDFC 143
           RIFRDHQRGCISVRKK RPDFC
Sbjct: 121 RIFRDHQRGCISVRKKQRPDFC 142

BLAST of MELO3C006567.2 vs. TrEMBL
Match: tr|A0A1R3IS40|A0A1R3IS40_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_21648 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 5.5e-71
Identity = 125/151 (82.78%), Postives = 134/151 (88.74%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPG G+FP G CFDGCRDH QASGFGTRVWNLSDRPVELQ+RVGSILKKVH+LKPGCSKR
Sbjct: 1   MPGLGIFPFGGCFDGCRDHTQASGFGTRVWNLSDRPVELQVRVGSILKKVHTLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRS---------MKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSL 120
           LKCKSIYKAYMPGRS         MKSLLYYYDE C PY+W+H++GGDS RMVKQQY+SL
Sbjct: 61  LKCKSIYKAYMPGRSGNNGSANAGMKSLLYYYDETCHPYIWVHDTGGDSSRMVKQQYISL 120

Query: 121 EDLREFSEIRIFRDHQRGCISVRKKPRPDFC 143
           EDLR+ SEIRIFRDHQRGCISVRKKPRPDFC
Sbjct: 121 EDLRDCSEIRIFRDHQRGCISVRKKPRPDFC 151

BLAST of MELO3C006567.2 vs. TrEMBL
Match: tr|A0A1R3GAK7|A0A1R3GAK7_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_27392 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.4e-69
Identity = 123/152 (80.92%), Postives = 133/152 (87.50%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPG G+FP G CFDGCRDH Q+SGFGTRVWNLSDRPVELQ+RVGSILKKVH+LKPGCSKR
Sbjct: 1   MPGLGIFPFGGCFDGCRDHTQSSGFGTRVWNLSDRPVELQVRVGSILKKVHTLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRS----------MKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVS 120
           LKCKSIYKAYMPGRS          MKSLLYYYDE C PY+W+H++GGDS RMVKQQY+S
Sbjct: 61  LKCKSIYKAYMPGRSGNNGSANYAGMKSLLYYYDETCHPYIWVHDTGGDSSRMVKQQYIS 120

Query: 121 LEDLREFSEIRIFRDHQRGCISVRKKPRPDFC 143
           LEDLR+ SEIRIFRDHQRGCISVRKK RPDFC
Sbjct: 121 LEDLRDCSEIRIFRDHQRGCISVRKKARPDFC 152

BLAST of MELO3C006567.2 vs. TrEMBL
Match: tr|A0A061ET99|A0A061ET99_THECC (EF-hand calcium-binding domain-containing protein 4A OS=Theobroma cacao OX=3641 GN=TCM_020511 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 3.9e-69
Identity = 122/148 (82.43%), Postives = 132/148 (89.19%), Query Frame = 0

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPG G+FP G CFDGCRDH QASGFGTR+WNLSDR VELQ+RVGSILKKVH+LKPG SKR
Sbjct: 20  MPGLGIFPFGGCFDGCRDHTQASGFGTRIWNLSDRAVELQVRVGSILKKVHTLKPGSSKR 79

Query: 61  LKCKSIYKAYMPGRS------MKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDL 120
           LKCKSIYKAYMPGRS      MKSLLYYYDE C PY+W+H++GGDS RMVKQQY+SLEDL
Sbjct: 80  LKCKSIYKAYMPGRSGNGSGGMKSLLYYYDETCHPYIWVHDTGGDSSRMVKQQYISLEDL 139

Query: 121 REFSEIRIFRDHQRGCISVRKKPRPDFC 143
           R+ SEIRIFRDHQRGCISVRKKPRPDFC
Sbjct: 140 RDCSEIRIFRDHQRGCISVRKKPRPDFC 167

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008438723.17.5e-80100.00PREDICTED: uncharacterized protein LOC103483746 [Cucumis melo][more]
XP_011650993.18.3e-7998.59PREDICTED: uncharacterized protein LOC105434839 [Cucumis sativus] >KGN57027.1 hy... [more]
XP_022936946.14.5e-7795.77uncharacterized protein LOC111443378 [Cucurbita moschata][more]
XP_023522910.15.9e-7795.07uncharacterized protein LOC111786960 [Cucurbita pepo subsp. pepo][more]
XP_022973671.15.0e-7694.37LOW QUALITY PROTEIN: uncharacterized protein LOC111472255 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT3G06145.11.1e-4057.78unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3AWR3|A0A1S3AWR3_CUCME4.9e-80100.00uncharacterized protein LOC103483746 OS=Cucumis melo OX=3656 GN=LOC103483746 PE=... [more]
tr|A0A0A0L8V0|A0A0A0L8V0_CUCSA5.5e-7998.59Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G150060 PE=4 SV=1[more]
tr|A0A1R3IS40|A0A1R3IS40_9ROSI5.5e-7182.78Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_21648 PE=4 SV=1[more]
tr|A0A1R3GAK7|A0A1R3GAK7_COCAP1.4e-6980.92Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_27392 PE=4 ... [more]
tr|A0A061ET99|A0A061ET99_THECC3.9e-6982.43EF-hand calcium-binding domain-containing protein 4A OS=Theobroma cacao OX=3641 ... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006567.2.1MELO3C006567.2.1mRNA


The following gene(s) are paralogous to this gene:

None